PMC:7033698 / 5269-6004 JSONTXT

Annnotations TAB JSON ListView MergeView

{"target":"https://pubannotation.org/docs/sourcedb/PMC/sourceid/7033698","sourcedb":"PMC","sourceid":"7033698","source_url":"https://www.ncbi.nlm.nih.gov/pmc/7033698","text":"Table 1. Blast search results of four insertion sequences against sequence databases.\nDatabase Gene source Insertion 1 TNGTKR Insertion 2 HKNNKS Insertion 3 RSYLTPGDSSSG Insertion 4 QTNSPRRA\nWhole database CoV 2 (2) 0 3 (3) 2 (2)\nHIV-1 0 0 0 0\nProkaryotic 27 (27) 3 (3) 74 (0) 66 (1)\nEukaryotic 71 (71) 97 (97) 23 (0) 32 (1)\nOnly viral database CoV 3 (3) 3 (3) 5 (3) 3 (2)\nHIV-1 18 (18) 1 (1) 4 (0)* 6 (0)**\nOther Eukaryotic viruses 49 (2) 66 (8) 69 (0) 62 (0)\nProkaryotic viruses 29 (13) 30 (1) 21 (0) 28 (0)\nUnclassified virus 1 (1) 0 1 (0) 1 (0)\nTop 100 hits are analyzed and the numbers of 100% matches are shown in parentheses. * Similarity at 67%; ** Random hits in Gag, Pro and Env sequences with similarity between 42% and 88%.","divisions":[{"label":"label","span":{"begin":0,"end":8}},{"label":"caption","span":{"begin":9,"end":85}},{"label":"title","span":{"begin":9,"end":85}},{"label":"table","span":{"begin":86,"end":548}},{"label":"tr","span":{"begin":86,"end":190}},{"label":"th","span":{"begin":86,"end":94}},{"label":"th","span":{"begin":95,"end":106}},{"label":"th","span":{"begin":107,"end":125}},{"label":"th","span":{"begin":126,"end":144}},{"label":"th","span":{"begin":145,"end":169}},{"label":"th","span":{"begin":170,"end":190}},{"label":"tr","span":{"begin":191,"end":229}},{"label":"td","span":{"begin":191,"end":205}},{"label":"td","span":{"begin":206,"end":209}},{"label":"td","span":{"begin":210,"end":215}},{"label":"td","span":{"begin":216,"end":217}},{"label":"td","span":{"begin":218,"end":223}},{"label":"td","span":{"begin":224,"end":229}},{"label":"tr","span":{"begin":230,"end":243}},{"label":"td","span":{"begin":230,"end":235}},{"label":"td","span":{"begin":236,"end":237}},{"label":"td","span":{"begin":238,"end":239}},{"label":"td","span":{"begin":240,"end":241}},{"label":"td","span":{"begin":242,"end":243}},{"label":"tr","span":{"begin":244,"end":283}},{"label":"td","span":{"begin":244,"end":255}},{"label":"td","span":{"begin":256,"end":263}},{"label":"td","span":{"begin":264,"end":269}},{"label":"td","span":{"begin":270,"end":276}},{"label":"td","span":{"begin":277,"end":283}},{"label":"tr","span":{"begin":284,"end":324}},{"label":"td","span":{"begin":284,"end":294}},{"label":"td","span":{"begin":295,"end":302}},{"label":"td","span":{"begin":303,"end":310}},{"label":"td","span":{"begin":311,"end":317}},{"label":"td","span":{"begin":318,"end":324}},{"label":"tr","span":{"begin":325,"end":372}},{"label":"td","span":{"begin":325,"end":344}},{"label":"td","span":{"begin":345,"end":348}},{"label":"td","span":{"begin":349,"end":354}},{"label":"td","span":{"begin":355,"end":360}},{"label":"td","span":{"begin":361,"end":366}},{"label":"td","span":{"begin":367,"end":372}},{"label":"tr","span":{"begin":373,"end":407}},{"label":"td","span":{"begin":373,"end":378}},{"label":"td","span":{"begin":379,"end":386}},{"label":"td","span":{"begin":387,"end":392}},{"label":"td","span":{"begin":393,"end":399}},{"label":"td","span":{"begin":400,"end":407}},{"label":"tr","span":{"begin":408,"end":460}},{"label":"td","span":{"begin":408,"end":432}},{"label":"td","span":{"begin":433,"end":439}},{"label":"td","span":{"begin":440,"end":446}},{"label":"td","span":{"begin":447,"end":453}},{"label":"td","span":{"begin":454,"end":460}},{"label":"tr","span":{"begin":461,"end":509}},{"label":"td","span":{"begin":461,"end":480}},{"label":"td","span":{"begin":481,"end":488}},{"label":"td","span":{"begin":489,"end":495}},{"label":"td","span":{"begin":496,"end":502}},{"label":"td","span":{"begin":503,"end":509}},{"label":"tr","span":{"begin":510,"end":548}},{"label":"td","span":{"begin":510,"end":528}},{"label":"td","span":{"begin":529,"end":534}},{"label":"td","span":{"begin":535,"end":536}},{"label":"td","span":{"begin":537,"end":542}},{"label":"td","span":{"begin":543,"end":548}}],"tracks":[{"project":"LitCovid-PD-FMA-UBERON","denotations":[{"id":"T46","span":{"begin":95,"end":99},"obj":"Body_part"},{"id":"T47","span":{"begin":230,"end":233},"obj":"Body_part"},{"id":"T48","span":{"begin":373,"end":376},"obj":"Body_part"},{"id":"T49","span":{"begin":672,"end":675},"obj":"Body_part"}],"attributes":[{"id":"A46","pred":"fma_id","subj":"T46","obj":"http://purl.org/sig/ont/fma/fma74402"},{"id":"A47","pred":"fma_id","subj":"T47","obj":"http://purl.org/sig/ont/fma/fma278683"},{"id":"A48","pred":"fma_id","subj":"T48","obj":"http://purl.org/sig/ont/fma/fma278683"},{"id":"A49","pred":"fma_id","subj":"T49","obj":"http://purl.org/sig/ont/fma/fma63011"},{"subj":"T46","pred":"source","obj":"LitCovid-PD-FMA-UBERON"},{"subj":"T47","pred":"source","obj":"LitCovid-PD-FMA-UBERON"},{"subj":"T48","pred":"source","obj":"LitCovid-PD-FMA-UBERON"},{"subj":"T49","pred":"source","obj":"LitCovid-PD-FMA-UBERON"}]},{"project":"LitCovid-PD-CLO","denotations":[{"id":"T46","span":{"begin":95,"end":99},"obj":"http://purl.obolibrary.org/obo/OGG_0000000002"},{"id":"T47","span":{"begin":210,"end":215},"obj":"http://purl.obolibrary.org/obo/CLO_0050507"},{"id":"T48","span":{"begin":224,"end":229},"obj":"http://purl.obolibrary.org/obo/CLO_0050507"},{"id":"T49","span":{"begin":256,"end":258},"obj":"http://purl.obolibrary.org/obo/CLO_0050509"},{"id":"T50","span":{"begin":260,"end":262},"obj":"http://purl.obolibrary.org/obo/CLO_0050509"},{"id":"T51","span":{"begin":284,"end":294},"obj":"http://purl.obolibrary.org/obo/NCBITaxon_2759"},{"id":"T52","span":{"begin":295,"end":297},"obj":"http://purl.obolibrary.org/obo/CLO_0054055"},{"id":"T53","span":{"begin":299,"end":301},"obj":"http://purl.obolibrary.org/obo/CLO_0054055"},{"id":"T54","span":{"begin":357,"end":362},"obj":"http://purl.obolibrary.org/obo/CLO_0001000"},{"id":"T55","span":{"begin":379,"end":381},"obj":"http://purl.obolibrary.org/obo/CLO_0050510"},{"id":"T56","span":{"begin":382,"end":388},"obj":"http://purl.obolibrary.org/obo/CLO_0054057"},{"id":"T57","span":{"begin":383,"end":385},"obj":"http://purl.obolibrary.org/obo/CLO_0050510"},{"id":"T58","span":{"begin":414,"end":424},"obj":"http://purl.obolibrary.org/obo/NCBITaxon_2759"},{"id":"T59","span":{"begin":425,"end":432},"obj":"http://purl.obolibrary.org/obo/NCBITaxon_10239"},{"id":"T60","span":{"begin":473,"end":480},"obj":"http://purl.obolibrary.org/obo/NCBITaxon_10239"},{"id":"T61","span":{"begin":492,"end":498},"obj":"http://purl.obolibrary.org/obo/CLO_0001053"},{"id":"T62","span":{"begin":523,"end":528},"obj":"http://purl.obolibrary.org/obo/NCBITaxon_10239"},{"id":"T63","span":{"begin":529,"end":534},"obj":"http://purl.obolibrary.org/obo/CLO_0053733"}],"attributes":[{"subj":"T46","pred":"source","obj":"LitCovid-PD-CLO"},{"subj":"T47","pred":"source","obj":"LitCovid-PD-CLO"},{"subj":"T48","pred":"source","obj":"LitCovid-PD-CLO"},{"subj":"T49","pred":"source","obj":"LitCovid-PD-CLO"},{"subj":"T50","pred":"source","obj":"LitCovid-PD-CLO"},{"subj":"T51","pred":"source","obj":"LitCovid-PD-CLO"},{"subj":"T52","pred":"source","obj":"LitCovid-PD-CLO"},{"subj":"T53","pred":"source","obj":"LitCovid-PD-CLO"},{"subj":"T54","pred":"source","obj":"LitCovid-PD-CLO"},{"subj":"T55","pred":"source","obj":"LitCovid-PD-CLO"},{"subj":"T56","pred":"source","obj":"LitCovid-PD-CLO"},{"subj":"T57","pred":"source","obj":"LitCovid-PD-CLO"},{"subj":"T58","pred":"source","obj":"LitCovid-PD-CLO"},{"subj":"T59","pred":"source","obj":"LitCovid-PD-CLO"},{"subj":"T60","pred":"source","obj":"LitCovid-PD-CLO"},{"subj":"T61","pred":"source","obj":"LitCovid-PD-CLO"},{"subj":"T62","pred":"source","obj":"LitCovid-PD-CLO"},{"subj":"T63","pred":"source","obj":"LitCovid-PD-CLO"}]},{"project":"LitCovid-PD-CHEBI","denotations":[{"id":"T7","span":{"begin":677,"end":680},"obj":"Chemical"}],"attributes":[{"id":"A7","pred":"chebi_id","subj":"T7","obj":"http://purl.obolibrary.org/obo/CHEBI_50342"},{"subj":"T7","pred":"source","obj":"LitCovid-PD-CHEBI"}]},{"project":"LitCovid-sentences","denotations":[{"id":"T39","span":{"begin":0,"end":8},"obj":"Sentence"},{"id":"T40","span":{"begin":9,"end":85},"obj":"Sentence"},{"id":"T41","span":{"begin":86,"end":190},"obj":"Sentence"},{"id":"T42","span":{"begin":191,"end":229},"obj":"Sentence"},{"id":"T43","span":{"begin":230,"end":243},"obj":"Sentence"},{"id":"T44","span":{"begin":244,"end":283},"obj":"Sentence"},{"id":"T45","span":{"begin":284,"end":324},"obj":"Sentence"},{"id":"T46","span":{"begin":325,"end":372},"obj":"Sentence"},{"id":"T47","span":{"begin":373,"end":407},"obj":"Sentence"},{"id":"T48","span":{"begin":408,"end":460},"obj":"Sentence"},{"id":"T49","span":{"begin":461,"end":509},"obj":"Sentence"},{"id":"T50","span":{"begin":510,"end":548},"obj":"Sentence"},{"id":"T51","span":{"begin":549,"end":735},"obj":"Sentence"}],"namespaces":[{"prefix":"_base","uri":"http://pubannotation.org/ontology/tao.owl#"}],"attributes":[{"subj":"T39","pred":"source","obj":"LitCovid-sentences"},{"subj":"T40","pred":"source","obj":"LitCovid-sentences"},{"subj":"T41","pred":"source","obj":"LitCovid-sentences"},{"subj":"T42","pred":"source","obj":"LitCovid-sentences"},{"subj":"T43","pred":"source","obj":"LitCovid-sentences"},{"subj":"T44","pred":"source","obj":"LitCovid-sentences"},{"subj":"T45","pred":"source","obj":"LitCovid-sentences"},{"subj":"T46","pred":"source","obj":"LitCovid-sentences"},{"subj":"T47","pred":"source","obj":"LitCovid-sentences"},{"subj":"T48","pred":"source","obj":"LitCovid-sentences"},{"subj":"T49","pred":"source","obj":"LitCovid-sentences"},{"subj":"T50","pred":"source","obj":"LitCovid-sentences"},{"subj":"T51","pred":"source","obj":"LitCovid-sentences"}]},{"project":"LitCovid-PubTator","denotations":[{"id":"74","span":{"begin":206,"end":211},"obj":"Species"},{"id":"75","span":{"begin":230,"end":235},"obj":"Species"},{"id":"76","span":{"begin":107,"end":116},"obj":"Species"},{"id":"77","span":{"begin":126,"end":135},"obj":"Species"},{"id":"78","span":{"begin":145,"end":154},"obj":"Species"},{"id":"79","span":{"begin":170,"end":179},"obj":"Species"},{"id":"81","span":{"begin":38,"end":57},"obj":"Species"},{"id":"85","span":{"begin":672,"end":675},"obj":"Gene"},{"id":"86","span":{"begin":685,"end":688},"obj":"Gene"},{"id":"87","span":{"begin":677,"end":680},"obj":"Chemical"}],"attributes":[{"id":"A74","pred":"tao:has_database_id","subj":"74","obj":"Tax:2697049"},{"id":"A75","pred":"tao:has_database_id","subj":"75","obj":"Tax:11676"},{"id":"A76","pred":"tao:has_database_id","subj":"76","obj":"Tax:2673"},{"id":"A77","pred":"tao:has_database_id","subj":"77","obj":"Tax:2673"},{"id":"A78","pred":"tao:has_database_id","subj":"78","obj":"Tax:2673"},{"id":"A79","pred":"tao:has_database_id","subj":"79","obj":"Tax:2673"},{"id":"A81","pred":"tao:has_database_id","subj":"81","obj":"Tax:2673"},{"id":"A85","pred":"tao:has_database_id","subj":"85","obj":"Gene:155030"},{"id":"A86","pred":"tao:has_database_id","subj":"86","obj":"Gene:100616444"},{"id":"A87","pred":"tao:has_database_id","subj":"87","obj":"MESH:D011392"},{"subj":"74","pred":"source","obj":"LitCovid-PubTator"},{"subj":"75","pred":"source","obj":"LitCovid-PubTator"},{"subj":"76","pred":"source","obj":"LitCovid-PubTator"},{"subj":"77","pred":"source","obj":"LitCovid-PubTator"},{"subj":"78","pred":"source","obj":"LitCovid-PubTator"},{"subj":"79","pred":"source","obj":"LitCovid-PubTator"},{"subj":"81","pred":"source","obj":"LitCovid-PubTator"},{"subj":"85","pred":"source","obj":"LitCovid-PubTator"},{"subj":"86","pred":"source","obj":"LitCovid-PubTator"},{"subj":"87","pred":"source","obj":"LitCovid-PubTator"}],"namespaces":[{"prefix":"Tax","uri":"https://www.ncbi.nlm.nih.gov/taxonomy/"},{"prefix":"MESH","uri":"https://id.nlm.nih.gov/mesh/"},{"prefix":"Gene","uri":"https://www.ncbi.nlm.nih.gov/gene/"},{"prefix":"CVCL","uri":"https://web.expasy.org/cellosaurus/CVCL_"}]}],"config":{"attribute types":[{"pred":"source","value type":"selection","values":[{"id":"LitCovid-PD-FMA-UBERON","color":"#9993ec","default":true},{"id":"LitCovid-PD-CLO","color":"#a6ec93"},{"id":"LitCovid-PD-CHEBI","color":"#ec93c0"},{"id":"LitCovid-sentences","color":"#93dbec"},{"id":"LitCovid-PubTator","color":"#ece393"}]}]}}