PMC:7033698 / 5269-6004 JSONTXT

{"project":"LitCovid-PD-FMA-UBERON","denotations":[{"id":"T46","span":{"begin":95,"end":99},"obj":"Body_part"},{"id":"T47","span":{"begin":230,"end":233},"obj":"Body_part"},{"id":"T48","span":{"begin":373,"end":376},"obj":"Body_part"},{"id":"T49","span":{"begin":672,"end":675},"obj":"Body_part"}],"attributes":[{"id":"A46","pred":"fma_id","subj":"T46","obj":"http://purl.org/sig/ont/fma/fma74402"},{"id":"A47","pred":"fma_id","subj":"T47","obj":"http://purl.org/sig/ont/fma/fma278683"},{"id":"A48","pred":"fma_id","subj":"T48","obj":"http://purl.org/sig/ont/fma/fma278683"},{"id":"A49","pred":"fma_id","subj":"T49","obj":"http://purl.org/sig/ont/fma/fma63011"}],"text":"Table 1. Blast search results of four insertion sequences against sequence databases.\nDatabase Gene source Insertion 1 TNGTKR Insertion 2 HKNNKS Insertion 3 RSYLTPGDSSSG Insertion 4 QTNSPRRA\nWhole database CoV 2 (2) 0 3 (3) 2 (2)\nHIV-1 0 0 0 0\nProkaryotic 27 (27) 3 (3) 74 (0) 66 (1)\nEukaryotic 71 (71) 97 (97) 23 (0) 32 (1)\nOnly viral database CoV 3 (3) 3 (3) 5 (3) 3 (2)\nHIV-1 18 (18) 1 (1) 4 (0)* 6 (0)**\nOther Eukaryotic viruses 49 (2) 66 (8) 69 (0) 62 (0)\nProkaryotic viruses 29 (13) 30 (1) 21 (0) 28 (0)\nUnclassified virus 1 (1) 0 1 (0) 1 (0)\nTop 100 hits are analyzed and the numbers of 100% matches are shown in parentheses. * Similarity at 67%; ** Random hits in Gag, Pro and Env sequences with similarity between 42% and 88%."}

{"project":"LitCovid-PD-CLO","denotations":[{"id":"T46","span":{"begin":95,"end":99},"obj":"http://purl.obolibrary.org/obo/OGG_0000000002"},{"id":"T47","span":{"begin":210,"end":215},"obj":"http://purl.obolibrary.org/obo/CLO_0050507"},{"id":"T48","span":{"begin":224,"end":229},"obj":"http://purl.obolibrary.org/obo/CLO_0050507"},{"id":"T49","span":{"begin":256,"end":258},"obj":"http://purl.obolibrary.org/obo/CLO_0050509"},{"id":"T50","span":{"begin":260,"end":262},"obj":"http://purl.obolibrary.org/obo/CLO_0050509"},{"id":"T51","span":{"begin":284,"end":294},"obj":"http://purl.obolibrary.org/obo/NCBITaxon_2759"},{"id":"T52","span":{"begin":295,"end":297},"obj":"http://purl.obolibrary.org/obo/CLO_0054055"},{"id":"T53","span":{"begin":299,"end":301},"obj":"http://purl.obolibrary.org/obo/CLO_0054055"},{"id":"T54","span":{"begin":357,"end":362},"obj":"http://purl.obolibrary.org/obo/CLO_0001000"},{"id":"T55","span":{"begin":379,"end":381},"obj":"http://purl.obolibrary.org/obo/CLO_0050510"},{"id":"T56","span":{"begin":382,"end":388},"obj":"http://purl.obolibrary.org/obo/CLO_0054057"},{"id":"T57","span":{"begin":383,"end":385},"obj":"http://purl.obolibrary.org/obo/CLO_0050510"},{"id":"T58","span":{"begin":414,"end":424},"obj":"http://purl.obolibrary.org/obo/NCBITaxon_2759"},{"id":"T59","span":{"begin":425,"end":432},"obj":"http://purl.obolibrary.org/obo/NCBITaxon_10239"},{"id":"T60","span":{"begin":473,"end":480},"obj":"http://purl.obolibrary.org/obo/NCBITaxon_10239"},{"id":"T61","span":{"begin":492,"end":498},"obj":"http://purl.obolibrary.org/obo/CLO_0001053"},{"id":"T62","span":{"begin":523,"end":528},"obj":"http://purl.obolibrary.org/obo/NCBITaxon_10239"},{"id":"T63","span":{"begin":529,"end":534},"obj":"http://purl.obolibrary.org/obo/CLO_0053733"}],"text":"Table 1. Blast search results of four insertion sequences against sequence databases.\nDatabase Gene source Insertion 1 TNGTKR Insertion 2 HKNNKS Insertion 3 RSYLTPGDSSSG Insertion 4 QTNSPRRA\nWhole database CoV 2 (2) 0 3 (3) 2 (2)\nHIV-1 0 0 0 0\nProkaryotic 27 (27) 3 (3) 74 (0) 66 (1)\nEukaryotic 71 (71) 97 (97) 23 (0) 32 (1)\nOnly viral database CoV 3 (3) 3 (3) 5 (3) 3 (2)\nHIV-1 18 (18) 1 (1) 4 (0)* 6 (0)**\nOther Eukaryotic viruses 49 (2) 66 (8) 69 (0) 62 (0)\nProkaryotic viruses 29 (13) 30 (1) 21 (0) 28 (0)\nUnclassified virus 1 (1) 0 1 (0) 1 (0)\nTop 100 hits are analyzed and the numbers of 100% matches are shown in parentheses. * Similarity at 67%; ** Random hits in Gag, Pro and Env sequences with similarity between 42% and 88%."}

{"project":"LitCovid-PD-CHEBI","denotations":[{"id":"T7","span":{"begin":677,"end":680},"obj":"Chemical"}],"attributes":[{"id":"A7","pred":"chebi_id","subj":"T7","obj":"http://purl.obolibrary.org/obo/CHEBI_50342"}],"text":"Table 1. Blast search results of four insertion sequences against sequence databases.\nDatabase Gene source Insertion 1 TNGTKR Insertion 2 HKNNKS Insertion 3 RSYLTPGDSSSG Insertion 4 QTNSPRRA\nWhole database CoV 2 (2) 0 3 (3) 2 (2)\nHIV-1 0 0 0 0\nProkaryotic 27 (27) 3 (3) 74 (0) 66 (1)\nEukaryotic 71 (71) 97 (97) 23 (0) 32 (1)\nOnly viral database CoV 3 (3) 3 (3) 5 (3) 3 (2)\nHIV-1 18 (18) 1 (1) 4 (0)* 6 (0)**\nOther Eukaryotic viruses 49 (2) 66 (8) 69 (0) 62 (0)\nProkaryotic viruses 29 (13) 30 (1) 21 (0) 28 (0)\nUnclassified virus 1 (1) 0 1 (0) 1 (0)\nTop 100 hits are analyzed and the numbers of 100% matches are shown in parentheses. * Similarity at 67%; ** Random hits in Gag, Pro and Env sequences with similarity between 42% and 88%."}

{"project":"LitCovid-sentences","denotations":[{"id":"T39","span":{"begin":0,"end":8},"obj":"Sentence"},{"id":"T40","span":{"begin":9,"end":85},"obj":"Sentence"},{"id":"T41","span":{"begin":86,"end":190},"obj":"Sentence"},{"id":"T42","span":{"begin":191,"end":229},"obj":"Sentence"},{"id":"T43","span":{"begin":230,"end":243},"obj":"Sentence"},{"id":"T44","span":{"begin":244,"end":283},"obj":"Sentence"},{"id":"T45","span":{"begin":284,"end":324},"obj":"Sentence"},{"id":"T46","span":{"begin":325,"end":372},"obj":"Sentence"},{"id":"T47","span":{"begin":373,"end":407},"obj":"Sentence"},{"id":"T48","span":{"begin":408,"end":460},"obj":"Sentence"},{"id":"T49","span":{"begin":461,"end":509},"obj":"Sentence"},{"id":"T50","span":{"begin":510,"end":548},"obj":"Sentence"},{"id":"T51","span":{"begin":549,"end":735},"obj":"Sentence"}],"namespaces":[{"prefix":"_base","uri":"http://pubannotation.org/ontology/tao.owl#"}],"text":"Table 1. Blast search results of four insertion sequences against sequence databases.\nDatabase Gene source Insertion 1 TNGTKR Insertion 2 HKNNKS Insertion 3 RSYLTPGDSSSG Insertion 4 QTNSPRRA\nWhole database CoV 2 (2) 0 3 (3) 2 (2)\nHIV-1 0 0 0 0\nProkaryotic 27 (27) 3 (3) 74 (0) 66 (1)\nEukaryotic 71 (71) 97 (97) 23 (0) 32 (1)\nOnly viral database CoV 3 (3) 3 (3) 5 (3) 3 (2)\nHIV-1 18 (18) 1 (1) 4 (0)* 6 (0)**\nOther Eukaryotic viruses 49 (2) 66 (8) 69 (0) 62 (0)\nProkaryotic viruses 29 (13) 30 (1) 21 (0) 28 (0)\nUnclassified virus 1 (1) 0 1 (0) 1 (0)\nTop 100 hits are analyzed and the numbers of 100% matches are shown in parentheses. * Similarity at 67%; ** Random hits in Gag, Pro and Env sequences with similarity between 42% and 88%."}

{"project":"LitCovid-PubTator","denotations":[{"id":"74","span":{"begin":206,"end":211},"obj":"Species"},{"id":"75","span":{"begin":230,"end":235},"obj":"Species"},{"id":"76","span":{"begin":107,"end":116},"obj":"Species"},{"id":"77","span":{"begin":126,"end":135},"obj":"Species"},{"id":"78","span":{"begin":145,"end":154},"obj":"Species"},{"id":"79","span":{"begin":170,"end":179},"obj":"Species"},{"id":"81","span":{"begin":38,"end":57},"obj":"Species"},{"id":"85","span":{"begin":672,"end":675},"obj":"Gene"},{"id":"86","span":{"begin":685,"end":688},"obj":"Gene"},{"id":"87","span":{"begin":677,"end":680},"obj":"Chemical"}],"attributes":[{"id":"A74","pred":"tao:has_database_id","subj":"74","obj":"Tax:2697049"},{"id":"A75","pred":"tao:has_database_id","subj":"75","obj":"Tax:11676"},{"id":"A76","pred":"tao:has_database_id","subj":"76","obj":"Tax:2673"},{"id":"A77","pred":"tao:has_database_id","subj":"77","obj":"Tax:2673"},{"id":"A78","pred":"tao:has_database_id","subj":"78","obj":"Tax:2673"},{"id":"A79","pred":"tao:has_database_id","subj":"79","obj":"Tax:2673"},{"id":"A81","pred":"tao:has_database_id","subj":"81","obj":"Tax:2673"},{"id":"A85","pred":"tao:has_database_id","subj":"85","obj":"Gene:155030"},{"id":"A86","pred":"tao:has_database_id","subj":"86","obj":"Gene:100616444"},{"id":"A87","pred":"tao:has_database_id","subj":"87","obj":"MESH:D011392"}],"namespaces":[{"prefix":"Tax","uri":"https://www.ncbi.nlm.nih.gov/taxonomy/"},{"prefix":"MESH","uri":"https://id.nlm.nih.gov/mesh/"},{"prefix":"Gene","uri":"https://www.ncbi.nlm.nih.gov/gene/"},{"prefix":"CVCL","uri":"https://web.expasy.org/cellosaurus/CVCL_"}],"text":"Table 1. Blast search results of four insertion sequences against sequence databases.\nDatabase Gene source Insertion 1 TNGTKR Insertion 2 HKNNKS Insertion 3 RSYLTPGDSSSG Insertion 4 QTNSPRRA\nWhole database CoV 2 (2) 0 3 (3) 2 (2)\nHIV-1 0 0 0 0\nProkaryotic 27 (27) 3 (3) 74 (0) 66 (1)\nEukaryotic 71 (71) 97 (97) 23 (0) 32 (1)\nOnly viral database CoV 3 (3) 3 (3) 5 (3) 3 (2)\nHIV-1 18 (18) 1 (1) 4 (0)* 6 (0)**\nOther Eukaryotic viruses 49 (2) 66 (8) 69 (0) 62 (0)\nProkaryotic viruses 29 (13) 30 (1) 21 (0) 28 (0)\nUnclassified virus 1 (1) 0 1 (0) 1 (0)\nTop 100 hits are analyzed and the numbers of 100% matches are shown in parentheses. * Similarity at 67%; ** Random hits in Gag, Pro and Env sequences with similarity between 42% and 88%."}