PMC:7029452 / 10494-11436
Annnotations
{"target":"https://pubannotation.org/docs/sourcedb/PMC/sourceid/7029452","sourcedb":"PMC","sourceid":"7029452","source_url":"https://www.ncbi.nlm.nih.gov/pmc/7029452","text":"Case 1 was a 48-year-old male patient living in France. He was travelling for professional reasons in China in various cities including Wuhan when he experienced his first symptoms (fever, headaches and cough) on 16 January. He flew back to Bordeaux, France on 22 January via Shanghai, Qingdao and Paris Charles de Gaulle airports. He reported wearing a mask during the flights. He sought medical attention from a general practitioner on 23 January, where he was suspected of COVID-19, and was subsequently transferred to the regional referring hospital in Bordeaux, isolated and sampled for laboratory confirmation of SARS-CoV-2 infection. Infection was confirmed on 24 January by the National Reference Centre (Figure). Case 1 tested positive only for the E gene target when using the Charité procedure [4] and was positive for all four RdRp-IP targets with threshold cycles (Ct) in good agreement with those obtained for the E gene target.","tracks":[{"project":"LitCovid-PubTator","denotations":[{"id":"162","span":{"begin":839,"end":843},"obj":"Gene"},{"id":"163","span":{"begin":30,"end":37},"obj":"Species"},{"id":"164","span":{"begin":182,"end":187},"obj":"Disease"},{"id":"165","span":{"begin":189,"end":198},"obj":"Disease"},{"id":"166","span":{"begin":203,"end":208},"obj":"Disease"},{"id":"167","span":{"begin":476,"end":484},"obj":"Disease"},{"id":"168","span":{"begin":619,"end":639},"obj":"Disease"},{"id":"169","span":{"begin":641,"end":650},"obj":"Disease"}],"attributes":[{"id":"A162","pred":"tao:has_database_id","subj":"162","obj":"Gene:43740578"},{"id":"A163","pred":"tao:has_database_id","subj":"163","obj":"Tax:9606"},{"id":"A164","pred":"tao:has_database_id","subj":"164","obj":"MESH:D005334"},{"id":"A165","pred":"tao:has_database_id","subj":"165","obj":"MESH:D006261"},{"id":"A166","pred":"tao:has_database_id","subj":"166","obj":"MESH:D003371"},{"id":"A167","pred":"tao:has_database_id","subj":"167","obj":"MESH:C000657245"},{"id":"A168","pred":"tao:has_database_id","subj":"168","obj":"MESH:C000657245"},{"id":"A169","pred":"tao:has_database_id","subj":"169","obj":"MESH:D007239"},{"subj":"162","pred":"source","obj":"LitCovid-PubTator"},{"subj":"163","pred":"source","obj":"LitCovid-PubTator"},{"subj":"164","pred":"source","obj":"LitCovid-PubTator"},{"subj":"165","pred":"source","obj":"LitCovid-PubTator"},{"subj":"166","pred":"source","obj":"LitCovid-PubTator"},{"subj":"167","pred":"source","obj":"LitCovid-PubTator"},{"subj":"168","pred":"source","obj":"LitCovid-PubTator"},{"subj":"169","pred":"source","obj":"LitCovid-PubTator"}],"namespaces":[{"prefix":"Tax","uri":"https://www.ncbi.nlm.nih.gov/taxonomy/"},{"prefix":"MESH","uri":"https://id.nlm.nih.gov/mesh/"},{"prefix":"Gene","uri":"https://www.ncbi.nlm.nih.gov/gene/"},{"prefix":"CVCL","uri":"https://web.expasy.org/cellosaurus/CVCL_"}]},{"project":"LitCovid-PD-FMA-UBERON","denotations":[{"id":"T8","span":{"begin":233,"end":237},"obj":"Body_part"},{"id":"T9","span":{"begin":760,"end":764},"obj":"Body_part"},{"id":"T10","span":{"begin":930,"end":934},"obj":"Body_part"}],"attributes":[{"id":"A8","pred":"fma_id","subj":"T8","obj":"http://purl.org/sig/ont/fma/fma25056"},{"id":"A9","pred":"fma_id","subj":"T9","obj":"http://purl.org/sig/ont/fma/fma74402"},{"id":"A10","pred":"fma_id","subj":"T10","obj":"http://purl.org/sig/ont/fma/fma74402"},{"subj":"T8","pred":"source","obj":"LitCovid-PD-FMA-UBERON"},{"subj":"T9","pred":"source","obj":"LitCovid-PD-FMA-UBERON"},{"subj":"T10","pred":"source","obj":"LitCovid-PD-FMA-UBERON"}]},{"project":"LitCovid-PD-MONDO","denotations":[{"id":"T58","span":{"begin":147,"end":149},"obj":"Disease"},{"id":"T59","span":{"begin":456,"end":458},"obj":"Disease"},{"id":"T60","span":{"begin":476,"end":484},"obj":"Disease"},{"id":"T61","span":{"begin":619,"end":627},"obj":"Disease"},{"id":"T62","span":{"begin":619,"end":623},"obj":"Disease"},{"id":"T63","span":{"begin":630,"end":639},"obj":"Disease"},{"id":"T64","span":{"begin":641,"end":650},"obj":"Disease"}],"attributes":[{"id":"A58","pred":"mondo_id","subj":"T58","obj":"http://purl.obolibrary.org/obo/MONDO_0017319"},{"id":"A59","pred":"mondo_id","subj":"T59","obj":"http://purl.obolibrary.org/obo/MONDO_0017319"},{"id":"A60","pred":"mondo_id","subj":"T60","obj":"http://purl.obolibrary.org/obo/MONDO_0100096"},{"id":"A61","pred":"mondo_id","subj":"T61","obj":"http://purl.obolibrary.org/obo/MONDO_0005091"},{"id":"A62","pred":"mondo_id","subj":"T62","obj":"http://purl.obolibrary.org/obo/MONDO_0005091"},{"id":"A63","pred":"mondo_id","subj":"T63","obj":"http://purl.obolibrary.org/obo/MONDO_0005550"},{"id":"A64","pred":"mondo_id","subj":"T64","obj":"http://purl.obolibrary.org/obo/MONDO_0005550"},{"subj":"T58","pred":"source","obj":"LitCovid-PD-MONDO"},{"subj":"T59","pred":"source","obj":"LitCovid-PD-MONDO"},{"subj":"T60","pred":"source","obj":"LitCovid-PD-MONDO"},{"subj":"T61","pred":"source","obj":"LitCovid-PD-MONDO"},{"subj":"T62","pred":"source","obj":"LitCovid-PD-MONDO"},{"subj":"T63","pred":"source","obj":"LitCovid-PD-MONDO"},{"subj":"T64","pred":"source","obj":"LitCovid-PD-MONDO"}]},{"project":"LitCovid-PD-CLO","denotations":[{"id":"T74","span":{"begin":11,"end":12},"obj":"http://purl.obolibrary.org/obo/CLO_0001020"},{"id":"T75","span":{"begin":13,"end":15},"obj":"http://purl.obolibrary.org/obo/CLO_0001382"},{"id":"T76","span":{"begin":25,"end":29},"obj":"http://purl.obolibrary.org/obo/UBERON_0003101"},{"id":"T77","span":{"begin":25,"end":29},"obj":"http://www.ebi.ac.uk/efo/EFO_0000970"},{"id":"T78","span":{"begin":261,"end":263},"obj":"http://purl.obolibrary.org/obo/CLO_0050507"},{"id":"T79","span":{"begin":352,"end":353},"obj":"http://purl.obolibrary.org/obo/CLO_0001020"},{"id":"T80","span":{"begin":412,"end":413},"obj":"http://purl.obolibrary.org/obo/CLO_0001020"},{"id":"T81","span":{"begin":729,"end":735},"obj":"http://purl.obolibrary.org/obo/UBERON_0000473"},{"id":"T82","span":{"begin":760,"end":764},"obj":"http://purl.obolibrary.org/obo/OGG_0000000002"},{"id":"T83","span":{"begin":930,"end":934},"obj":"http://purl.obolibrary.org/obo/OGG_0000000002"}],"attributes":[{"subj":"T74","pred":"source","obj":"LitCovid-PD-CLO"},{"subj":"T75","pred":"source","obj":"LitCovid-PD-CLO"},{"subj":"T76","pred":"source","obj":"LitCovid-PD-CLO"},{"subj":"T77","pred":"source","obj":"LitCovid-PD-CLO"},{"subj":"T78","pred":"source","obj":"LitCovid-PD-CLO"},{"subj":"T79","pred":"source","obj":"LitCovid-PD-CLO"},{"subj":"T80","pred":"source","obj":"LitCovid-PD-CLO"},{"subj":"T81","pred":"source","obj":"LitCovid-PD-CLO"},{"subj":"T82","pred":"source","obj":"LitCovid-PD-CLO"},{"subj":"T83","pred":"source","obj":"LitCovid-PD-CLO"}]},{"project":"LitCovid-PD-CHEBI","denotations":[{"id":"T5","span":{"begin":25,"end":29},"obj":"Chemical"},{"id":"T6","span":{"begin":844,"end":846},"obj":"Chemical"}],"attributes":[{"id":"A5","pred":"chebi_id","subj":"T5","obj":"http://purl.obolibrary.org/obo/CHEBI_30780"},{"id":"A6","pred":"chebi_id","subj":"T6","obj":"http://purl.obolibrary.org/obo/CHEBI_74076"},{"subj":"T5","pred":"source","obj":"LitCovid-PD-CHEBI"},{"subj":"T6","pred":"source","obj":"LitCovid-PD-CHEBI"}]},{"project":"LitCovid-PD-HP","denotations":[{"id":"T10","span":{"begin":182,"end":187},"obj":"Phenotype"},{"id":"T11","span":{"begin":189,"end":198},"obj":"Phenotype"},{"id":"T12","span":{"begin":203,"end":208},"obj":"Phenotype"}],"attributes":[{"id":"A10","pred":"hp_id","subj":"T10","obj":"http://purl.obolibrary.org/obo/HP_0001945"},{"id":"A11","pred":"hp_id","subj":"T11","obj":"http://purl.obolibrary.org/obo/HP_0002315"},{"id":"A12","pred":"hp_id","subj":"T12","obj":"http://purl.obolibrary.org/obo/HP_0012735"},{"subj":"T10","pred":"source","obj":"LitCovid-PD-HP"},{"subj":"T11","pred":"source","obj":"LitCovid-PD-HP"},{"subj":"T12","pred":"source","obj":"LitCovid-PD-HP"}]},{"project":"LitCovid-sentences","denotations":[{"id":"T72","span":{"begin":0,"end":55},"obj":"Sentence"},{"id":"T73","span":{"begin":56,"end":224},"obj":"Sentence"},{"id":"T74","span":{"begin":225,"end":331},"obj":"Sentence"},{"id":"T75","span":{"begin":332,"end":378},"obj":"Sentence"},{"id":"T76","span":{"begin":379,"end":640},"obj":"Sentence"},{"id":"T77","span":{"begin":641,"end":721},"obj":"Sentence"},{"id":"T78","span":{"begin":722,"end":942},"obj":"Sentence"}],"namespaces":[{"prefix":"_base","uri":"http://pubannotation.org/ontology/tao.owl#"}],"attributes":[{"subj":"T72","pred":"source","obj":"LitCovid-sentences"},{"subj":"T73","pred":"source","obj":"LitCovid-sentences"},{"subj":"T74","pred":"source","obj":"LitCovid-sentences"},{"subj":"T75","pred":"source","obj":"LitCovid-sentences"},{"subj":"T76","pred":"source","obj":"LitCovid-sentences"},{"subj":"T77","pred":"source","obj":"LitCovid-sentences"},{"subj":"T78","pred":"source","obj":"LitCovid-sentences"}]}],"config":{"attribute types":[{"pred":"source","value type":"selection","values":[{"id":"LitCovid-PubTator","color":"#93ec9d","default":true},{"id":"LitCovid-PD-FMA-UBERON","color":"#ec93a2"},{"id":"LitCovid-PD-MONDO","color":"#93bcec"},{"id":"LitCovid-PD-CLO","color":"#d6ec93"},{"id":"LitCovid-PD-CHEBI","color":"#e793ec"},{"id":"LitCovid-PD-HP","color":"#93eccd"},{"id":"LitCovid-sentences","color":"#ecb393"}]}]}}