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PMC:7029452 / 10494-11436 JSONTXT

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LitCovid-PubTator

Id Subject Object Predicate Lexical cue tao:has_database_id
162 839-843 Gene denotes RdRp Gene:43740578
163 30-37 Species denotes patient Tax:9606
164 182-187 Disease denotes fever MESH:D005334
165 189-198 Disease denotes headaches MESH:D006261
166 203-208 Disease denotes cough MESH:D003371
167 476-484 Disease denotes COVID-19 MESH:C000657245
168 619-639 Disease denotes SARS-CoV-2 infection MESH:C000657245
169 641-650 Disease denotes Infection MESH:D007239

LitCovid-PD-FMA-UBERON

Id Subject Object Predicate Lexical cue fma_id
T8 233-237 Body_part denotes back http://purl.org/sig/ont/fma/fma25056
T9 760-764 Body_part denotes gene http://purl.org/sig/ont/fma/fma74402
T10 930-934 Body_part denotes gene http://purl.org/sig/ont/fma/fma74402

LitCovid-PD-MONDO

Id Subject Object Predicate Lexical cue mondo_id
T58 147-149 Disease denotes he http://purl.obolibrary.org/obo/MONDO_0017319
T59 456-458 Disease denotes he http://purl.obolibrary.org/obo/MONDO_0017319
T60 476-484 Disease denotes COVID-19 http://purl.obolibrary.org/obo/MONDO_0100096
T61 619-627 Disease denotes SARS-CoV http://purl.obolibrary.org/obo/MONDO_0005091
T62 619-623 Disease denotes SARS http://purl.obolibrary.org/obo/MONDO_0005091
T63 630-639 Disease denotes infection http://purl.obolibrary.org/obo/MONDO_0005550
T64 641-650 Disease denotes Infection http://purl.obolibrary.org/obo/MONDO_0005550

LitCovid-PD-CLO

Id Subject Object Predicate Lexical cue
T74 11-12 http://purl.obolibrary.org/obo/CLO_0001020 denotes a
T75 13-15 http://purl.obolibrary.org/obo/CLO_0001382 denotes 48
T76 25-29 http://purl.obolibrary.org/obo/UBERON_0003101 denotes male
T77 25-29 http://www.ebi.ac.uk/efo/EFO_0000970 denotes male
T78 261-263 http://purl.obolibrary.org/obo/CLO_0050507 denotes 22
T79 352-353 http://purl.obolibrary.org/obo/CLO_0001020 denotes a
T80 412-413 http://purl.obolibrary.org/obo/CLO_0001020 denotes a
T81 729-735 http://purl.obolibrary.org/obo/UBERON_0000473 denotes tested
T82 760-764 http://purl.obolibrary.org/obo/OGG_0000000002 denotes gene
T83 930-934 http://purl.obolibrary.org/obo/OGG_0000000002 denotes gene

LitCovid-PD-CHEBI

Id Subject Object Predicate Lexical cue chebi_id
T5 25-29 Chemical denotes male http://purl.obolibrary.org/obo/CHEBI_30780
T6 844-846 Chemical denotes IP http://purl.obolibrary.org/obo/CHEBI_74076

LitCovid-PD-HP

Id Subject Object Predicate Lexical cue hp_id
T10 182-187 Phenotype denotes fever http://purl.obolibrary.org/obo/HP_0001945
T11 189-198 Phenotype denotes headaches http://purl.obolibrary.org/obo/HP_0002315
T12 203-208 Phenotype denotes cough http://purl.obolibrary.org/obo/HP_0012735

LitCovid-sentences

Id Subject Object Predicate Lexical cue
T72 0-55 Sentence denotes Case 1 was a 48-year-old male patient living in France.
T73 56-224 Sentence denotes He was travelling for professional reasons in China in various cities including Wuhan when he experienced his first symptoms (fever, headaches and cough) on 16 January.
T74 225-331 Sentence denotes He flew back to Bordeaux, France on 22 January via Shanghai, Qingdao and Paris Charles de Gaulle airports.
T75 332-378 Sentence denotes He reported wearing a mask during the flights.
T76 379-640 Sentence denotes He sought medical attention from a general practitioner on 23 January, where he was suspected of COVID-19, and was subsequently transferred to the regional referring hospital in Bordeaux, isolated and sampled for laboratory confirmation of SARS-CoV-2 infection.
T77 641-721 Sentence denotes Infection was confirmed on 24 January by the National Reference Centre (Figure).
T78 722-942 Sentence denotes Case 1 tested positive only for the E gene target when using the Charité procedure [4] and was positive for all four RdRp-IP targets with threshold cycles (Ct) in good agreement with those obtained for the E gene target.