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PMC:549712 / 24020-24901 JSONTXT

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Id Subject Object Predicate Lexical cue
T7450 0-2 TO denotes To
T7451 3-10 VB denotes analyze
T7452 110-117 VBD denotes stained
T7453 11-18 IN denotes whether
T7454 35-44 VBN denotes recruited
T7455 19-30 NNS denotes macrophages
T7456 31-34 VBP denotes are
T7457 45-49 IN denotes into
T7458 50-55 NNS denotes areas
T7459 56-61 WRB denotes where
T7460 72-74 VBZ denotes is
T7461 62-71 NN denotes apoptosis
T7462 75-84 JJ denotes prominent
T7463 85-91 IN denotes during
T7464 92-105 NN denotes embryogenesis
T7465 105-107 , denotes ,
T7466 107-109 PRP denotes we
T7467 118-129 JJ denotes consecutive
T7468 137-145 NNS denotes sections
T7469 130-136 JJ denotes serial
T7470 146-152 CC denotes either
T7471 153-157 IN denotes with
T7472 158-161 DT denotes the
T7473 181-187 NN denotes marker
T7474 162-172 NN denotes macrophage
T7475 173-180 NN denotes surface
T7476 188-190 NN denotes F4
T7477 190-191 HYPH denotes /
T7478 191-193 CD denotes 80
T7479 194-196 CC denotes or
T7480 197-201 IN denotes with
T7481 202-208 NN denotes aCasp3
T7482 208-209 . denotes .
T7483 209-289 sentence denotes Surprisingly, there was no co-localization of macrophages with apoptotic cells.
T7484 210-222 RB denotes Surprisingly
T7485 230-233 VBD denotes was
T7486 222-224 , denotes ,
T7487 224-229 EX denotes there
T7488 234-236 DT denotes no
T7489 237-252 NN denotes co-localization
T7490 253-255 IN denotes of
T7491 256-267 NNS denotes macrophages
T7492 268-272 IN denotes with
T7493 273-282 JJ denotes apoptotic
T7494 283-288 NNS denotes cells
T7495 288-289 . denotes .
T7496 289-462 sentence denotes In virtually all embryonic tissues, apoptotic cells and macrophages were localized in different compartments (Figure 6e,6i; and see also Additional data file 1, Figure S1).
T7497 290-292 IN denotes In
T7498 363-372 VBN denotes localized
T7499 293-302 RB denotes virtually
T7500 317-324 NNS denotes tissues
T7501 303-306 DT denotes all
T7502 307-316 JJ denotes embryonic
T7503 324-326 , denotes ,
T7504 326-335 JJ denotes apoptotic
T7505 336-341 NNS denotes cells
T7506 342-345 CC denotes and
T7507 346-357 NNS denotes macrophages
T7508 358-362 VBD denotes were
T7509 373-375 IN denotes in
T7510 376-385 JJ denotes different
T7511 386-398 NNS denotes compartments
T7512 399-400 -LRB- denotes (
T7513 410-412 NN denotes 6i
T7514 400-406 NN denotes Figure
T7515 407-409 NN denotes 6e
T7516 409-410 , denotes ,
T7517 412-413 : denotes ;
T7518 414-417 CC denotes and
T7519 418-421 VB denotes see
T7520 422-426 RB denotes also
T7521 427-437 JJ denotes Additional
T7522 438-442 NNS denotes data
T7523 443-447 NN denotes file
T7524 448-449 CD denotes 1
T7525 449-451 , denotes ,
T7526 451-457 NN denotes Figure
T7527 458-460 NN denotes S1
T7528 460-461 -RRB- denotes )
T7529 461-462 . denotes .
T7530 462-628 sentence denotes This suggests that at this stage of development it is mainly neighboring cells that are involved in removal of apoptotic cells, rather than professional macrophages.
T7531 463-467 DT denotes This
T7532 468-476 VBZ denotes suggests
T7533 477-481 IN denotes that
T7534 514-516 VBZ denotes is
T7535 482-484 IN denotes at
T7536 485-489 DT denotes this
T7537 490-495 NN denotes stage
T7538 496-498 IN denotes of
T7539 499-510 NN denotes development
T7540 511-513 PRP denotes it
T7541 517-523 RB denotes mainly
T7542 524-535 VBG denotes neighboring
T7543 536-541 NNS denotes cells
T7544 542-546 WDT denotes that
T7545 551-559 VBN denotes involved
T7546 547-550 VBP denotes are
T7547 560-562 IN denotes in
T7548 563-570 NN denotes removal
T7549 571-573 IN denotes of
T7550 574-583 JJ denotes apoptotic
T7551 584-589 NNS denotes cells
T7552 589-591 , denotes ,
T7553 591-597 RB denotes rather
T7554 598-602 IN denotes than
T7555 603-615 JJ denotes professional
T7556 616-627 NNS denotes macrophages
T7557 627-628 . denotes .
T7558 628-881 sentence denotes In summary, our analysis in vivo did not reveal any impairment in apoptotic cell clearance in Ptdsr-deficient embryos during development and further suggests that phagocytosis of apoptotic cells is mainly mediated by non-professional 'bystander' cells.
T7559 629-631 IN denotes In
T7560 670-676 VB denotes reveal
T7561 632-639 NN denotes summary
T7562 639-641 , denotes ,
T7563 641-644 PRP$ denotes our
T7564 645-653 NN denotes analysis
T7565 654-656 FW denotes in
T7566 657-661 FW denotes vivo
T7567 662-665 VBD denotes did
T7568 666-669 RB denotes not
T7569 677-680 DT denotes any
T7570 681-691 NN denotes impairment
T7571 692-694 IN denotes in
T7572 695-704 JJ denotes apoptotic
T7573 710-719 NN denotes clearance
T7574 705-709 NN denotes cell
T7575 720-722 IN denotes in
T7576 723-728 NN denotes Ptdsr
T7577 729-738 JJ denotes deficient
T7578 728-729 HYPH denotes -
T7579 739-746 NNS denotes embryos
T7580 747-753 IN denotes during
T7581 754-765 NN denotes development
T7582 766-769 CC denotes and
T7583 770-777 RBR denotes further
T7584 778-786 VBZ denotes suggests
T7585 787-791 IN denotes that
T7586 834-842 VBN denotes mediated
T7587 792-804 NN denotes phagocytosis
T7588 805-807 IN denotes of
T7589 808-817 JJ denotes apoptotic
T7590 818-823 NNS denotes cells
T7591 824-826 VBZ denotes is
T7592 827-833 RB denotes mainly
T7593 843-845 IN denotes by
T7594 846-862 JJ denotes non-professional
T7595 875-880 NNS denotes cells
T7596 863-864 `` denotes '
T7597 864-873 NN denotes bystander
T7598 873-874 '' denotes '
T7599 880-881 . denotes .
R4277 T7450 T7451 aux To,analyze
R4278 T7451 T7452 advcl analyze,stained
R4279 T7453 T7454 mark whether,recruited
R4280 T7454 T7451 ccomp recruited,analyze
R4281 T7455 T7454 nsubjpass macrophages,recruited
R4282 T7456 T7454 auxpass are,recruited
R4283 T7457 T7454 prep into,recruited
R4284 T7458 T7457 pobj areas,into
R4285 T7459 T7460 advmod where,is
R4286 T7460 T7458 relcl is,areas
R4287 T7461 T7460 nsubj apoptosis,is
R4288 T7462 T7460 acomp prominent,is
R4289 T7463 T7460 prep during,is
R4290 T7464 T7463 pobj embryogenesis,during
R4291 T7465 T7452 punct ", ",stained
R4292 T7466 T7452 nsubj we,stained
R4293 T7467 T7468 amod consecutive,sections
R4294 T7468 T7452 dobj sections,stained
R4295 T7469 T7468 amod serial,sections
R4296 T7470 T7471 preconj either,with
R4297 T7471 T7452 prep with,stained
R4298 T7472 T7473 det the,marker
R4299 T7473 T7471 pobj marker,with
R4300 T7474 T7473 compound macrophage,marker
R4301 T7475 T7473 compound surface,marker
R4302 T7476 T7473 appos F4,marker
R4303 T7477 T7476 punct /,F4
R4304 T7478 T7476 nummod 80,F4
R4305 T7479 T7471 cc or,with
R4306 T7480 T7471 conj with,with
R4307 T7481 T7480 pobj aCasp3,with
R4308 T7482 T7452 punct .,stained
R4309 T7484 T7485 advmod Surprisingly,was
R4310 T7486 T7485 punct ", ",was
R4311 T7487 T7485 expl there,was
R4312 T7488 T7489 det no,co-localization
R4313 T7489 T7485 attr co-localization,was
R4314 T7490 T7489 prep of,co-localization
R4315 T7491 T7490 pobj macrophages,of
R4316 T7492 T7489 prep with,co-localization
R4317 T7493 T7494 amod apoptotic,cells
R4318 T7494 T7492 pobj cells,with
R4319 T7495 T7485 punct .,was
R4320 T7497 T7498 prep In,localized
R4321 T7499 T7500 advmod virtually,tissues
R4322 T7500 T7497 pobj tissues,In
R4323 T7501 T7500 det all,tissues
R4324 T7502 T7500 amod embryonic,tissues
R4325 T7503 T7498 punct ", ",localized
R4326 T7504 T7505 amod apoptotic,cells
R4327 T7505 T7498 nsubjpass cells,localized
R4328 T7506 T7505 cc and,cells
R4329 T7507 T7505 conj macrophages,cells
R4330 T7508 T7498 auxpass were,localized
R4331 T7509 T7498 prep in,localized
R4332 T7510 T7511 amod different,compartments
R4333 T7511 T7509 pobj compartments,in
R4334 T7512 T7513 punct (,6i
R4335 T7513 T7498 parataxis 6i,localized
R4336 T7514 T7513 nmod Figure,6i
R4337 T7515 T7513 nmod 6e,6i
R4338 T7516 T7513 punct ",",6i
R4339 T7517 T7513 punct ;,6i
R4340 T7518 T7513 cc and,6i
R4341 T7519 T7513 conj see,6i
R4342 T7520 T7519 advmod also,see
R4343 T7521 T7522 amod Additional,data
R4344 T7522 T7523 compound data,file
R4345 T7523 T7519 dobj file,see
R4346 T7524 T7523 nummod 1,file
R4347 T7525 T7523 punct ", ",file
R4348 T7526 T7527 compound Figure,S1
R4349 T7527 T7523 npadvmod S1,file
R4350 T7528 T7513 punct ),6i
R4351 T7529 T7498 punct .,localized
R4352 T7531 T7532 nsubj This,suggests
R4353 T7533 T7534 mark that,is
R4354 T7534 T7532 ccomp is,suggests
R4355 T7535 T7534 prep at,is
R4356 T7536 T7537 det this,stage
R4357 T7537 T7535 pobj stage,at
R4358 T7538 T7537 prep of,stage
R4359 T7539 T7538 pobj development,of
R4360 T7540 T7534 nsubj it,is
R4361 T7541 T7534 advmod mainly,is
R4362 T7542 T7543 amod neighboring,cells
R4363 T7543 T7534 attr cells,is
R4364 T7544 T7545 dep that,involved
R4365 T7545 T7543 relcl involved,cells
R4366 T7546 T7545 auxpass are,involved
R4367 T7547 T7545 prep in,involved
R4368 T7548 T7547 pobj removal,in
R4369 T7549 T7548 prep of,removal
R4370 T7550 T7551 amod apoptotic,cells
R4371 T7551 T7549 pobj cells,of
R4372 T7552 T7543 punct ", ",cells
R4373 T7553 T7554 advmod rather,than
R4374 T7554 T7543 cc than,cells
R4375 T7555 T7556 amod professional,macrophages
R4376 T7556 T7543 conj macrophages,cells
R4377 T7557 T7532 punct .,suggests
R4378 T7559 T7560 prep In,reveal
R4379 T7561 T7559 pobj summary,In
R4380 T7562 T7560 punct ", ",reveal
R4381 T7563 T7564 poss our,analysis
R4382 T7564 T7560 nsubj analysis,reveal
R4383 T7565 T7566 advmod in,vivo
R4384 T7566 T7564 advmod vivo,analysis
R4385 T7567 T7560 aux did,reveal
R4386 T7568 T7560 neg not,reveal
R4387 T7569 T7570 det any,impairment
R4388 T7570 T7560 dobj impairment,reveal
R4389 T7571 T7560 prep in,reveal
R4390 T7572 T7573 amod apoptotic,clearance
R4391 T7573 T7571 pobj clearance,in
R4392 T7574 T7573 compound cell,clearance
R4393 T7575 T7560 prep in,reveal
R4394 T7576 T7577 npadvmod Ptdsr,deficient
R4395 T7577 T7579 amod deficient,embryos
R4396 T7578 T7577 punct -,deficient
R4397 T7579 T7575 pobj embryos,in
R4398 T7580 T7560 prep during,reveal
R4399 T7581 T7580 pobj development,during
R4400 T7582 T7560 cc and,reveal
R4401 T7583 T7584 advmod further,suggests
R4402 T7584 T7560 conj suggests,reveal
R4403 T7585 T7586 mark that,mediated
R4404 T7586 T7584 ccomp mediated,suggests
R4405 T7587 T7586 nsubjpass phagocytosis,mediated
R4406 T7588 T7587 prep of,phagocytosis
R4407 T7589 T7590 amod apoptotic,cells
R4408 T7590 T7588 pobj cells,of
R4409 T7591 T7586 auxpass is,mediated
R4410 T7592 T7586 advmod mainly,mediated
R4411 T7593 T7586 prep by,mediated
R4412 T7594 T7595 amod non-professional,cells
R4413 T7595 T7593 pobj cells,by
R4414 T7596 T7595 punct ',cells
R4415 T7597 T7595 nmod bystander,cells
R4416 T7598 T7595 punct ',cells
R4417 T7599 T7560 punct .,reveal

craft-ca-core-ex-dev

Below, discontinuous spans are shown in the chain model. You can change it to the bag model.

Id Subject Object Predicate Lexical cue
T6630 188-193 PR_EXT:000001813 denotes F4/80
T6623 19-30 CL:0000235 denotes macrophages
T6624 35-44 GO_EXT:biological_recruitment denotes recruited
T6625 62-71 GO:0006915 denotes apoptosis
T6626 92-105 GO:0009790 denotes embryogenesis
T6627 162-172 CL:0000235 denotes macrophage
T6628 173-180 GO:0009986 denotes surface
T6629 181-187 CHEBI_SO_EXT:molecular_indicator_or_label_or_marker_or_tag denotes marker
T6631 202-208 PR:000026878 denotes aCasp3
T6632 240-252 GO_PATO_EXT:biological_localization_process_or_quality denotes localization
T6633 256-267 CL:0000235 denotes macrophages
T6634 273-282 GO_PATO_EXT:apoptotic_process_or_quality denotes apoptotic
T6635 273-288 CL:0000445 denotes apoptotic cells
T6636 283-288 CL_GO_EXT:cell denotes cells
T6637 307-324 UBERON:0005291 denotes embryonic tissues
T6638 326-335 GO_PATO_EXT:apoptotic_process_or_quality denotes apoptotic
T6639 326-341 CL:0000445 denotes apoptotic cells
T6640 336-341 CL_GO_EXT:cell denotes cells
T6641 346-357 CL:0000235 denotes macrophages
T6642 363-372 GO_PATO_EXT:biological_localization_process_or_quality denotes localized
T6643 536-541 CL_GO_EXT:cell denotes cells
T6644 563-589 GO:0043277 denotes removal of apoptotic cells
T6645 574-589 CL:0000445 denotes apoptotic cells
T6646 584-589 CL_GO_EXT:cell denotes cells
T6647 616-627 CL:0000235 denotes macrophages
T6648 695-709 CL:0000445 denotes apoptotic cell
T6649 695-719 GO:0043277 denotes apoptotic cell clearance
T6650 705-709 CL_GO_EXT:cell denotes cell
T6651 723-728 PR_EXT:000009218 denotes Ptdsr
T6652 739-746 UBERON:0000922 denotes embryos
T6653 792-823 GO:0043277 denotes phagocytosis of apoptotic cells
T6654 808-823 CL:0000445 denotes apoptotic cells
T6655 818-823 CL_GO_EXT:cell denotes cells
T6656 875-880 CL_GO_EXT:cell denotes cells

craft-ca-core-dev

Below, discontinuous spans are shown in the chain model. You can change it to the bag model.

Id Subject Object Predicate Lexical cue
T6363 19-30 CL:0000235 denotes macrophages
T6364 62-71 GO:0006915 denotes apoptosis
T6365 92-105 GO:0009790 denotes embryogenesis
T6366 162-172 CL:0000235 denotes macrophage
T6367 173-180 GO:0009986 denotes surface
T6368 188-193 PR:000001813 denotes F4/80
T6369 202-208 PR:000026878 denotes aCasp3
T6370 256-267 CL:0000235 denotes macrophages
T6371 273-288 CL:0000445 denotes apoptotic cells
T6372 307-324 UBERON:0005291 denotes embryonic tissues
T6373 326-341 CL:0000445 denotes apoptotic cells
T6374 346-357 CL:0000235 denotes macrophages
T6375 563-589 GO:0043277 denotes removal of apoptotic cells
T6376 574-589 CL:0000445 denotes apoptotic cells
T6377 616-627 CL:0000235 denotes macrophages
T6378 695-709 CL:0000445 denotes apoptotic cell
T6379 695-719 GO:0043277 denotes apoptotic cell clearance
T6380 723-728 PR:000009218 denotes Ptdsr
T6381 739-746 UBERON:0000922 denotes embryos
T6382 792-823 GO:0043277 denotes phagocytosis of apoptotic cells
T6383 808-823 CL:0000445 denotes apoptotic cells