PMC:3589482 / 6-273 JSONTXT

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    bionlp-st-ge-2016-spacy-parsed

    {"project":"bionlp-st-ge-2016-spacy-parsed","denotations":[{"id":"T765","span":{"begin":12,"end":18},"obj":"NNP"},{"id":"T766","span":{"begin":19,"end":24},"obj":"NNP"},{"id":"T767","span":{"begin":24,"end":25},"obj":":"},{"id":"T768","span":{"begin":25,"end":26},"obj":"NN"},{"id":"T769","span":{"begin":27,"end":35},"obj":"NNP"},{"id":"T770","span":{"begin":36,"end":48},"obj":"NNP"},{"id":"T771","span":{"begin":49,"end":52},"obj":"CC"},{"id":"T772","span":{"begin":53,"end":66},"obj":"JJ"},{"id":"T773","span":{"begin":67,"end":80},"obj":"NN"},{"id":"T774","span":{"begin":81,"end":83},"obj":"IN"},{"id":"T775","span":{"begin":84,"end":90},"obj":"NNP"},{"id":"T776","span":{"begin":91,"end":99},"obj":"NNP"},{"id":"T794","span":{"begin":254,"end":256},"obj":"TO"},{"id":"T793","span":{"begin":245,"end":253},"obj":"NN"},{"id":"T792","span":{"begin":242,"end":244},"obj":"IN"},{"id":"T791","span":{"begin":230,"end":241},"obj":"NNS"},{"id":"T790","span":{"begin":227,"end":229},"obj":"IN"},{"id":"T789","span":{"begin":219,"end":226},"obj":"VBN"},{"id":"T788","span":{"begin":212,"end":218},"obj":"RB"},{"id":"T787","span":{"begin":209,"end":211},"obj":"VBZ"},{"id":"T786","span":{"begin":207,"end":208},"obj":"-RRB-"},{"id":"T785","span":{"begin":202,"end":207},"obj":"NN"},{"id":"T784","span":{"begin":201,"end":202},"obj":"-LRB-"},{"id":"T783","span":{"begin":199,"end":200},"obj":"CD"},{"id":"T782","span":{"begin":194,"end":198},"obj":"NN"},{"id":"T781","span":{"begin":184,"end":193},"obj":"NN"},{"id":"T780","span":{"begin":174,"end":183},"obj":"NN"},{"id":"T779","span":{"begin":162,"end":173},"obj":"NN"},{"id":"T778","span":{"begin":159,"end":161},"obj":"CC"},{"id":"T777","span":{"begin":150,"end":158},"obj":"NNP"}],"relations":[{"id":"R352","pred":"nmod","subj":"T765","obj":"T770"},{"id":"R353","pred":"compound","subj":"T766","obj":"T768"},{"id":"R354","pred":"punct","subj":"T767","obj":"T768"},{"id":"R355","pred":"compound","subj":"T768","obj":"T770"},{"id":"R356","pred":"compound","subj":"T769","obj":"T770"},{"id":"R357","pred":"nmod","subj":"T770","obj":"T773"},{"id":"R358","pred":"cc","subj":"T771","obj":"T770"},{"id":"R359","pred":"conj","subj":"T772","obj":"T770"},{"id":"R360","pred":"nsubjpass","subj":"T773","obj":"T789"},{"id":"R361","pred":"prep","subj":"T774","obj":"T773"},{"id":"R362","pred":"compound","subj":"T775","obj":"T777"},{"id":"R363","pred":"compound","subj":"T776","obj":"T777"},{"id":"R364","pred":"pobj","subj":"T777","obj":"T774"},{"id":"R365","pred":"cc","subj":"T778","obj":"T777"},{"id":"R366","pred":"conj","subj":"T779","obj":"T773"},{"id":"R367","pred":"amod","subj":"T780","obj":"T781"},{"id":"R368","pred":"compound","subj":"T781","obj":"T782"},{"id":"R369","pred":"appos","subj":"T782","obj":"T773"},{"id":"R370","pred":"nummod","subj":"T783","obj":"T782"},{"id":"R371","pred":"punct","subj":"T784","obj":"T782"},{"id":"R372","pred":"appos","subj":"T785","obj":"T782"},{"id":"R373","pred":"punct","subj":"T786","obj":"T782"},{"id":"R374","pred":"auxpass","subj":"T787","obj":"T789"},{"id":"R375","pred":"advmod","subj":"T788","obj":"T789"},{"id":"R376","pred":"ROOT","subj":"T789","obj":"T789"},{"id":"R377","pred":"prep","subj":"T790","obj":"T789"},{"id":"R378","pred":"pobj","subj":"T791","obj":"T790"},{"id":"R379","pred":"prep","subj":"T792","obj":"T789"},{"id":"R380","pred":"pobj","subj":"T793","obj":"T792"},{"id":"R381","pred":"prep","subj":"T794","obj":"T793"}],"text":"anscription Factor C/EBP-β Mediates Constitutive and LPS-Inducible Transcription of Murine SerpinB2\nC/EBP-β Mediates SerpinB2 Transcription\n\nAbstract\nSerpinB2 or plasminogen activator inhibitor type 2 (PAI-2) is highly induced in macrophages in response to inflammato"}

    pmc-enju-pas

    {"project":"pmc-enju-pas","denotations":[{"id":"T239","span":{"begin":84,"end":90},"obj":"NNP"},{"id":"T240","span":{"begin":91,"end":99},"obj":"NN"},{"id":"T258","span":{"begin":254,"end":256},"obj":"TO"},{"id":"T257","span":{"begin":245,"end":253},"obj":"NN"},{"id":"T256","span":{"begin":242,"end":244},"obj":"IN"},{"id":"T255","span":{"begin":230,"end":241},"obj":"NN"},{"id":"T254","span":{"begin":227,"end":229},"obj":"IN"},{"id":"T253","span":{"begin":219,"end":226},"obj":"VB"},{"id":"T252","span":{"begin":212,"end":218},"obj":"RB"},{"id":"T251","span":{"begin":209,"end":211},"obj":"VB"},{"id":"T250","span":{"begin":207,"end":208},"obj":"-RRB-"},{"id":"T249","span":{"begin":202,"end":207},"obj":"NN"},{"id":"T248","span":{"begin":201,"end":202},"obj":"-LRB-"},{"id":"T247","span":{"begin":199,"end":200},"obj":"CD"},{"id":"T246","span":{"begin":194,"end":198},"obj":"NN"},{"id":"T245","span":{"begin":184,"end":193},"obj":"NN"},{"id":"T244","span":{"begin":174,"end":183},"obj":"NN"},{"id":"T243","span":{"begin":162,"end":173},"obj":"NN"},{"id":"T242","span":{"begin":159,"end":161},"obj":"CC"},{"id":"T241","span":{"begin":150,"end":158},"obj":"NN"},{"id":"T231","span":{"begin":12,"end":18},"obj":"NNP"},{"id":"T232","span":{"begin":19,"end":26},"obj":"NNP"},{"id":"T233","span":{"begin":27,"end":35},"obj":"NNP"},{"id":"T234","span":{"begin":36,"end":48},"obj":"NNP"},{"id":"T235","span":{"begin":49,"end":52},"obj":"CC"},{"id":"T236","span":{"begin":53,"end":66},"obj":"JJ"},{"id":"T237","span":{"begin":67,"end":80},"obj":"NN"},{"id":"T238","span":{"begin":81,"end":83},"obj":"IN"}],"relations":[{"id":"R47","pred":"arg2Of","subj":"T240","obj":"T238"},{"id":"R48","pred":"arg1Of","subj":"T240","obj":"T239"},{"id":"R49","pred":"arg1Of","subj":"T241","obj":"T242"},{"id":"R50","pred":"arg2Of","subj":"T243","obj":"T242"},{"id":"R51","pred":"arg1Of","subj":"T246","obj":"T241"},{"id":"R52","pred":"arg1Of","subj":"T246","obj":"T243"},{"id":"R53","pred":"arg1Of","subj":"T246","obj":"T244"},{"id":"R54","pred":"arg1Of","subj":"T246","obj":"T245"},{"id":"R55","pred":"arg1Of","subj":"T246","obj":"T247"},{"id":"R56","pred":"arg1Of","subj":"T246","obj":"T248"},{"id":"R57","pred":"arg1Of","subj":"T246","obj":"T251"},{"id":"R58","pred":"arg2Of","subj":"T246","obj":"T253"},{"id":"R61","pred":"arg2Of","subj":"T249","obj":"T248"},{"id":"R62","pred":"arg3Of","subj":"T250","obj":"T248"},{"id":"R63","pred":"arg2Of","subj":"T253","obj":"T251"},{"id":"R64","pred":"arg1Of","subj":"T253","obj":"T252"},{"id":"R65","pred":"arg1Of","subj":"T253","obj":"T254"},{"id":"R66","pred":"arg1Of","subj":"T253","obj":"T256"},{"id":"R68","pred":"arg2Of","subj":"T255","obj":"T254"},{"id":"R69","pred":"arg2Of","subj":"T257","obj":"T256"},{"id":"R70","pred":"arg1Of","subj":"T257","obj":"T258"},{"id":"R667","pred":"arg1Of","subj":"T234","obj":"T231"},{"id":"R668","pred":"arg1Of","subj":"T234","obj":"T232"},{"id":"R669","pred":"arg1Of","subj":"T234","obj":"T233"},{"id":"R670","pred":"arg1Of","subj":"T234","obj":"T235"},{"id":"R671","pred":"arg2Of","subj":"T236","obj":"T235"},{"id":"R673","pred":"arg1Of","subj":"T237","obj":"T234"},{"id":"R674","pred":"arg1Of","subj":"T237","obj":"T236"},{"id":"R675","pred":"arg1Of","subj":"T237","obj":"T238"}],"namespaces":[{"prefix":"_base","uri":"http://kmcs.nii.ac.jp/enju/"}],"text":"anscription Factor C/EBP-β Mediates Constitutive and LPS-Inducible Transcription of Murine SerpinB2\nC/EBP-β Mediates SerpinB2 Transcription\n\nAbstract\nSerpinB2 or plasminogen activator inhibitor type 2 (PAI-2) is highly induced in macrophages in response to inflammato"}

    bionlp-st-ge-2016-test-proteins

    {"project":"bionlp-st-ge-2016-test-proteins","denotations":[{"id":"T157","span":{"begin":19,"end":26},"obj":"Protein"},{"id":"T158","span":{"begin":91,"end":99},"obj":"Protein"},{"id":"T159","span":{"begin":150,"end":158},"obj":"Protein"},{"id":"T160","span":{"begin":162,"end":200},"obj":"Protein"},{"id":"T161","span":{"begin":202,"end":207},"obj":"Protein"}],"namespaces":[{"prefix":"_base","uri":"http://bionlp.dbcls.jp/ontology/ge.owl#"}],"text":"anscription Factor C/EBP-β Mediates Constitutive and LPS-Inducible Transcription of Murine SerpinB2\nC/EBP-β Mediates SerpinB2 Transcription\n\nAbstract\nSerpinB2 or plasminogen activator inhibitor type 2 (PAI-2) is highly induced in macrophages in response to inflammato"}

    bionlp-st-ge-2016-uniprot

    {"project":"bionlp-st-ge-2016-uniprot","denotations":[{"id":"T530","span":{"begin":150,"end":158},"obj":"http://www.uniprot.org/uniprot/P05120"},{"id":"T537","span":{"begin":199,"end":205},"obj":"http://www.uniprot.org/uniprot/P05120"},{"id":"T524","span":{"begin":19,"end":26},"obj":"http://www.uniprot.org/uniprot/P28033"},{"id":"T529","span":{"begin":91,"end":99},"obj":"http://www.uniprot.org/uniprot/P05120"}],"namespaces":[{"prefix":"_base","uri":"http://www.uniprot.org/uniprot/"}],"text":"anscription Factor C/EBP-β Mediates Constitutive and LPS-Inducible Transcription of Murine SerpinB2\nC/EBP-β Mediates SerpinB2 Transcription\n\nAbstract\nSerpinB2 or plasminogen activator inhibitor type 2 (PAI-2) is highly induced in macrophages in response to inflammato"}

    GO-BP

    {"project":"GO-BP","denotations":[{"id":"T177","span":{"begin":67,"end":80},"obj":"http://purl.obolibrary.org/obo/GO_0006351"},{"id":"T178","span":{"begin":162,"end":183},"obj":"http://purl.obolibrary.org/obo/GO_0031639"}],"text":"anscription Factor C/EBP-β Mediates Constitutive and LPS-Inducible Transcription of Murine SerpinB2\nC/EBP-β Mediates SerpinB2 Transcription\n\nAbstract\nSerpinB2 or plasminogen activator inhibitor type 2 (PAI-2) is highly induced in macrophages in response to inflammato"}

    sentences

    {"project":"sentences","denotations":[{"id":"T2","span":{"begin":100,"end":139},"obj":"Sentence"},{"id":"T3","span":{"begin":141,"end":149},"obj":"Sentence"}],"namespaces":[{"prefix":"_base","uri":"http://pubannotation.org/ontology/tao.owl#"}],"text":"anscription Factor C/EBP-β Mediates Constitutive and LPS-Inducible Transcription of Murine SerpinB2\nC/EBP-β Mediates SerpinB2 Transcription\n\nAbstract\nSerpinB2 or plasminogen activator inhibitor type 2 (PAI-2) is highly induced in macrophages in response to inflammato"}

    simple1

    {"project":"simple1","denotations":[{"id":"T210","span":{"begin":19,"end":26},"obj":"Protein"},{"id":"T212","span":{"begin":150,"end":158},"obj":"Protein"},{"id":"T213","span":{"begin":162,"end":200},"obj":"Protein"},{"id":"T214","span":{"begin":202,"end":207},"obj":"Protein"},{"id":"T211","span":{"begin":91,"end":99},"obj":"Protein"}],"text":"anscription Factor C/EBP-β Mediates Constitutive and LPS-Inducible Transcription of Murine SerpinB2\nC/EBP-β Mediates SerpinB2 Transcription\n\nAbstract\nSerpinB2 or plasminogen activator inhibitor type 2 (PAI-2) is highly induced in macrophages in response to inflammato"}

    BioNLP16_DUT

    {"project":"BioNLP16_DUT","denotations":[{"id":"T510","span":{"begin":53,"end":66},"obj":"Positive_regulation"},{"id":"T511","span":{"begin":67,"end":80},"obj":"Transcription"},{"id":"T512","span":{"begin":219,"end":226},"obj":"Positive_regulation"},{"id":"T491","span":{"begin":19,"end":26},"obj":"Protein"},{"id":"T492","span":{"begin":91,"end":99},"obj":"Protein"},{"id":"T493","span":{"begin":150,"end":158},"obj":"Protein"},{"id":"T494","span":{"begin":162,"end":200},"obj":"Protein"},{"id":"T495","span":{"begin":202,"end":207},"obj":"Protein"}],"relations":[{"id":"R307","pred":"themeOf","subj":"T511","obj":"T510"},{"id":"R676","pred":"themeOf","subj":"T492","obj":"T511"},{"id":"R677","pred":"themeOf","subj":"T493","obj":"T512"},{"id":"R678","pred":"themeOf","subj":"T494","obj":"T512"},{"id":"R679","pred":"themeOf","subj":"T495","obj":"T512"}],"text":"anscription Factor C/EBP-β Mediates Constitutive and LPS-Inducible Transcription of Murine SerpinB2\nC/EBP-β Mediates SerpinB2 Transcription\n\nAbstract\nSerpinB2 or plasminogen activator inhibitor type 2 (PAI-2) is highly induced in macrophages in response to inflammato"}

    BioNLP16_Messiy

    {"project":"BioNLP16_Messiy","denotations":[{"id":"T601","span":{"begin":19,"end":26},"obj":"Protein"},{"id":"T602","span":{"begin":91,"end":99},"obj":"Protein"},{"id":"T620","span":{"begin":67,"end":80},"obj":"Transcription"},{"id":"T621","span":{"begin":27,"end":35},"obj":"Positive_regulation"},{"id":"T603","span":{"begin":150,"end":158},"obj":"Protein"},{"id":"T604","span":{"begin":162,"end":200},"obj":"Protein"},{"id":"T605","span":{"begin":202,"end":207},"obj":"Protein"},{"id":"T622","span":{"begin":219,"end":226},"obj":"Positive_regulation"}],"relations":[{"id":"R694","pred":"causeOf","subj":"T601","obj":"T621"},{"id":"R715","pred":"themeOf","subj":"T602","obj":"T620"},{"id":"R717","pred":"themeOf","subj":"T604","obj":"T622"},{"id":"R732","pred":"themeOf","subj":"T620","obj":"T621"}],"text":"anscription Factor C/EBP-β Mediates Constitutive and LPS-Inducible Transcription of Murine SerpinB2\nC/EBP-β Mediates SerpinB2 Transcription\n\nAbstract\nSerpinB2 or plasminogen activator inhibitor type 2 (PAI-2) is highly induced in macrophages in response to inflammato"}

    DLUT931

    {"project":"DLUT931","denotations":[{"id":"T567","span":{"begin":19,"end":26},"obj":"Protein"},{"id":"T568","span":{"begin":91,"end":99},"obj":"Protein"},{"id":"T586","span":{"begin":67,"end":80},"obj":"Transcription"},{"id":"T587","span":{"begin":27,"end":35},"obj":"Positive_regulation"},{"id":"T588","span":{"begin":53,"end":66},"obj":"Positive_regulation"},{"id":"T569","span":{"begin":150,"end":158},"obj":"Protein"},{"id":"T570","span":{"begin":162,"end":200},"obj":"Protein"},{"id":"T571","span":{"begin":202,"end":207},"obj":"Protein"},{"id":"T589","span":{"begin":219,"end":226},"obj":"Positive_regulation"}],"relations":[{"id":"R684","pred":"themeOf","subj":"T570","obj":"T589"},{"id":"R681","pred":"causeOf","subj":"T567","obj":"T587"},{"id":"R682","pred":"themeOf","subj":"T568","obj":"T586"},{"id":"R683","pred":"themeOf","subj":"T569","obj":"T589"},{"id":"R691","pred":"themeOf","subj":"T586","obj":"T587"},{"id":"R692","pred":"themeOf","subj":"T586","obj":"T588"}],"text":"anscription Factor C/EBP-β Mediates Constitutive and LPS-Inducible Transcription of Murine SerpinB2\nC/EBP-β Mediates SerpinB2 Transcription\n\nAbstract\nSerpinB2 or plasminogen activator inhibitor type 2 (PAI-2) is highly induced in macrophages in response to inflammato"}

    bionlp-st-ge-2016-test-ihmc

    {"project":"bionlp-st-ge-2016-test-ihmc","denotations":[{"id":"T749","span":{"begin":81,"end":99},"obj":"Protein"},{"id":"T758","span":{"begin":53,"end":99},"obj":"Transcription"},{"id":"T723","span":{"begin":230,"end":241},"obj":"Entity"},{"id":"T739","span":{"begin":202,"end":207},"obj":"Protein"},{"id":"T740","span":{"begin":150,"end":208},"obj":"Protein"},{"id":"T744","span":{"begin":162,"end":208},"obj":"Protein"}],"relations":[{"id":"R349","pred":"themeOf","subj":"T749","obj":"T758"}],"text":"anscription Factor C/EBP-β Mediates Constitutive and LPS-Inducible Transcription of Murine SerpinB2\nC/EBP-β Mediates SerpinB2 Transcription\n\nAbstract\nSerpinB2 or plasminogen activator inhibitor type 2 (PAI-2) is highly induced in macrophages in response to inflammato"}

    bionlp-st-ge-2016-test-tees

    {"project":"bionlp-st-ge-2016-test-tees","denotations":[{"id":"T643","span":{"begin":219,"end":226},"obj":"Positive_regulation"},{"id":"T642","span":{"begin":219,"end":226},"obj":"Positive_regulation"},{"id":"T640","span":{"begin":202,"end":207},"obj":"Protein"},{"id":"T636","span":{"begin":84,"end":99},"obj":"Protein"},{"id":"T637","span":{"begin":67,"end":80},"obj":"Transcription"},{"id":"T638","span":{"begin":27,"end":35},"obj":"Positive_regulation"},{"id":"T639","span":{"begin":162,"end":200},"obj":"Protein"}],"relations":[{"id":"R322","pred":"themeOf","subj":"T640","obj":"T643"},{"id":"R704","pred":"themeOf","subj":"T636","obj":"T637"},{"id":"R705","pred":"themeOf","subj":"T637","obj":"T638"},{"id":"R706","pred":"themeOf","subj":"T639","obj":"T642"}],"text":"anscription Factor C/EBP-β Mediates Constitutive and LPS-Inducible Transcription of Murine SerpinB2\nC/EBP-β Mediates SerpinB2 Transcription\n\nAbstract\nSerpinB2 or plasminogen activator inhibitor type 2 (PAI-2) is highly induced in macrophages in response to inflammato"}

    testone

    {"project":"testone","denotations":[{"id":"T20","span":{"begin":19,"end":26},"obj":"Protein"},{"id":"T21","span":{"begin":91,"end":99},"obj":"Protein"},{"id":"T24","span":{"begin":202,"end":207},"obj":"Protein"},{"id":"T23","span":{"begin":162,"end":200},"obj":"Protein"},{"id":"T22","span":{"begin":150,"end":158},"obj":"Protein"}],"relations":[{"id":"R1","pred":"equivalentTo","subj":"T24","obj":"T23"}],"text":"anscription Factor C/EBP-β Mediates Constitutive and LPS-Inducible Transcription of Murine SerpinB2\nC/EBP-β Mediates SerpinB2 Transcription\n\nAbstract\nSerpinB2 or plasminogen activator inhibitor type 2 (PAI-2) is highly induced in macrophages in response to inflammato"}

    test3

    {"project":"test3","denotations":[{"id":"T49","span":{"begin":19,"end":26},"obj":"Protein"},{"id":"T50","span":{"begin":91,"end":99},"obj":"Protein"},{"id":"T68","span":{"begin":19,"end":26},"obj":"Protein"},{"id":"T69","span":{"begin":91,"end":99},"obj":"Protein"},{"id":"T73","span":{"begin":219,"end":226},"obj":"Positive_regulation"},{"id":"T72","span":{"begin":202,"end":207},"obj":"Protein"},{"id":"T71","span":{"begin":162,"end":200},"obj":"Protein"},{"id":"T70","span":{"begin":150,"end":158},"obj":"Protein"},{"id":"T53","span":{"begin":202,"end":207},"obj":"Protein"},{"id":"T52","span":{"begin":162,"end":200},"obj":"Protein"},{"id":"T51","span":{"begin":150,"end":158},"obj":"Protein"}],"relations":[{"id":"R15","pred":"themeOf","subj":"T71","obj":"T73"},{"id":"R16","pred":"equivalentTo","subj":"T72","obj":"T71"}],"text":"anscription Factor C/EBP-β Mediates Constitutive and LPS-Inducible Transcription of Murine SerpinB2\nC/EBP-β Mediates SerpinB2 Transcription\n\nAbstract\nSerpinB2 or plasminogen activator inhibitor type 2 (PAI-2) is highly induced in macrophages in response to inflammato"}