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PMC:3589482 / 6-273 JSONTXT

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bionlp-st-ge-2016-spacy-parsed

Id Subject Object Predicate Lexical cue
T765 12-18 NNP denotes Factor
T766 19-24 NNP denotes C/EBP
T767 24-25 : denotes -
T768 25-26 NN denotes β
T769 27-35 NNP denotes Mediates
T770 36-48 NNP denotes Constitutive
T771 49-52 CC denotes and
T772 53-66 JJ denotes LPS-Inducible
T773 67-80 NN denotes Transcription
T774 81-83 IN denotes of
T775 84-90 NNP denotes Murine
T776 91-99 NNP denotes SerpinB2
T794 254-256 TO denotes to
T793 245-253 NN denotes response
T792 242-244 IN denotes in
T791 230-241 NNS denotes macrophages
T790 227-229 IN denotes in
T789 219-226 VBN denotes induced
T788 212-218 RB denotes highly
T787 209-211 VBZ denotes is
T786 207-208 -RRB- denotes )
T785 202-207 NN denotes PAI-2
T784 201-202 -LRB- denotes (
T783 199-200 CD denotes 2
T782 194-198 NN denotes type
T781 184-193 NN denotes inhibitor
T780 174-183 NN denotes activator
T779 162-173 NN denotes plasminogen
T778 159-161 CC denotes or
T777 150-158 NNP denotes SerpinB2
R352 T765 T770 nmod Factor,Constitutive
R353 T766 T768 compound C/EBP,β
R354 T767 T768 punct -,β
R355 T768 T770 compound β,Constitutive
R356 T769 T770 compound Mediates,Constitutive
R357 T770 T773 nmod Constitutive,Transcription
R358 T771 T770 cc and,Constitutive
R359 T772 T770 conj LPS-Inducible,Constitutive
R360 T773 T789 nsubjpass Transcription,induced
R361 T774 T773 prep of,Transcription
R362 T775 T777 compound Murine,SerpinB2
R363 T776 T777 compound SerpinB2,SerpinB2
R364 T777 T774 pobj SerpinB2,of
R365 T778 T777 cc or,SerpinB2
R366 T779 T773 conj plasminogen,Transcription
R367 T780 T781 amod activator,inhibitor
R368 T781 T782 compound inhibitor,type
R369 T782 T773 appos type,Transcription
R370 T783 T782 nummod 2,type
R371 T784 T782 punct (,type
R372 T785 T782 appos PAI-2,type
R373 T786 T782 punct ),type
R374 T787 T789 auxpass is,induced
R375 T788 T789 advmod highly,induced
R376 T789 T789 ROOT induced,induced
R377 T790 T789 prep in,induced
R378 T791 T790 pobj macrophages,in
R379 T792 T789 prep in,induced
R380 T793 T792 pobj response,in
R381 T794 T793 prep to,response

pmc-enju-pas

Id Subject Object Predicate Lexical cue
T239 84-90 NNP denotes Murine
T240 91-99 NN denotes SerpinB2
T258 254-256 TO denotes to
T257 245-253 NN denotes response
T256 242-244 IN denotes in
T255 230-241 NN denotes macrophages
T254 227-229 IN denotes in
T253 219-226 VB denotes induced
T252 212-218 RB denotes highly
T251 209-211 VB denotes is
T250 207-208 -RRB- denotes )
T249 202-207 NN denotes PAI-2
T248 201-202 -LRB- denotes (
T247 199-200 CD denotes 2
T246 194-198 NN denotes type
T245 184-193 NN denotes inhibitor
T244 174-183 NN denotes activator
T243 162-173 NN denotes plasminogen
T242 159-161 CC denotes or
T241 150-158 NN denotes SerpinB2
T231 12-18 NNP denotes Factor
T232 19-26 NNP denotes C/EBP-β
T233 27-35 NNP denotes Mediates
T234 36-48 NNP denotes Constitutive
T235 49-52 CC denotes and
T236 53-66 JJ denotes LPS-Inducible
T237 67-80 NN denotes Transcription
T238 81-83 IN denotes of
R47 T240 T238 arg2Of SerpinB2,of
R48 T240 T239 arg1Of SerpinB2,Murine
R49 T241 T242 arg1Of SerpinB2,or
R50 T243 T242 arg2Of plasminogen,or
R51 T246 T241 arg1Of type,SerpinB2
R52 T246 T243 arg1Of type,plasminogen
R53 T246 T244 arg1Of type,activator
R54 T246 T245 arg1Of type,inhibitor
R55 T246 T247 arg1Of type,2
R56 T246 T248 arg1Of type,(
R57 T246 T251 arg1Of type,is
R58 T246 T253 arg2Of type,induced
R61 T249 T248 arg2Of PAI-2,(
R62 T250 T248 arg3Of ),(
R63 T253 T251 arg2Of induced,is
R64 T253 T252 arg1Of induced,highly
R65 T253 T254 arg1Of induced,in
R66 T253 T256 arg1Of induced,in
R68 T255 T254 arg2Of macrophages,in
R69 T257 T256 arg2Of response,in
R70 T257 T258 arg1Of response,to
R667 T234 T231 arg1Of Constitutive,Factor
R668 T234 T232 arg1Of Constitutive,C/EBP-β
R669 T234 T233 arg1Of Constitutive,Mediates
R670 T234 T235 arg1Of Constitutive,and
R671 T236 T235 arg2Of LPS-Inducible,and
R673 T237 T234 arg1Of Transcription,Constitutive
R674 T237 T236 arg1Of Transcription,LPS-Inducible
R675 T237 T238 arg1Of Transcription,of

bionlp-st-ge-2016-test-proteins

Id Subject Object Predicate Lexical cue
T157 19-26 Protein denotes C/EBP-β
T158 91-99 Protein denotes SerpinB2
T159 150-158 Protein denotes SerpinB2
T160 162-200 Protein denotes plasminogen activator inhibitor type 2
T161 202-207 Protein denotes PAI-2

bionlp-st-ge-2016-uniprot

Id Subject Object Predicate Lexical cue
T530 150-158 http://www.uniprot.org/uniprot/P05120 denotes SerpinB2
T537 199-205 http://www.uniprot.org/uniprot/P05120 denotes 2 (PAI
T524 19-26 http://www.uniprot.org/uniprot/P28033 denotes C/EBP-β
T529 91-99 http://www.uniprot.org/uniprot/P05120 denotes SerpinB2

GO-BP

Id Subject Object Predicate Lexical cue
T177 67-80 http://purl.obolibrary.org/obo/GO_0006351 denotes Transcription
T178 162-183 http://purl.obolibrary.org/obo/GO_0031639 denotes plasminogen activator

sentences

Id Subject Object Predicate Lexical cue
T2 100-139 Sentence denotes C/EBP-β Mediates SerpinB2 Transcription
T3 141-149 Sentence denotes Abstract

simple1

Id Subject Object Predicate Lexical cue
T210 19-26 Protein denotes C/EBP-β
T212 150-158 Protein denotes SerpinB2
T213 162-200 Protein denotes plasminogen activator inhibitor type 2
T214 202-207 Protein denotes PAI-2
T211 91-99 Protein denotes SerpinB2

BioNLP16_DUT

Id Subject Object Predicate Lexical cue
T510 53-66 Positive_regulation denotes LPS-Inducible
T511 67-80 Transcription denotes Transcription
T512 219-226 Positive_regulation denotes induced
T491 19-26 Protein denotes C/EBP-β
T492 91-99 Protein denotes SerpinB2
T493 150-158 Protein denotes SerpinB2
T494 162-200 Protein denotes plasminogen activator inhibitor type 2
T495 202-207 Protein denotes PAI-2
R307 T511 T510 themeOf Transcription,LPS-Inducible
R676 T492 T511 themeOf SerpinB2,Transcription
R677 T493 T512 themeOf SerpinB2,induced
R678 T494 T512 themeOf plasminogen activator inhibitor type 2,induced
R679 T495 T512 themeOf PAI-2,induced

BioNLP16_Messiy

Id Subject Object Predicate Lexical cue
T601 19-26 Protein denotes C/EBP-β
T602 91-99 Protein denotes SerpinB2
T620 67-80 Transcription denotes Transcription
T621 27-35 Positive_regulation denotes Mediates
T603 150-158 Protein denotes SerpinB2
T604 162-200 Protein denotes plasminogen activator inhibitor type 2
T605 202-207 Protein denotes PAI-2
T622 219-226 Positive_regulation denotes induced
R694 T601 T621 causeOf C/EBP-β,Mediates
R715 T602 T620 themeOf SerpinB2,Transcription
R717 T604 T622 themeOf plasminogen activator inhibitor type 2,induced
R732 T620 T621 themeOf Transcription,Mediates

DLUT931

Id Subject Object Predicate Lexical cue
T567 19-26 Protein denotes C/EBP-β
T568 91-99 Protein denotes SerpinB2
T586 67-80 Transcription denotes Transcription
T587 27-35 Positive_regulation denotes Mediates
T588 53-66 Positive_regulation denotes LPS-Inducible
T569 150-158 Protein denotes SerpinB2
T570 162-200 Protein denotes plasminogen activator inhibitor type 2
T571 202-207 Protein denotes PAI-2
T589 219-226 Positive_regulation denotes induced
R684 T570 T589 themeOf plasminogen activator inhibitor type 2,induced
R681 T567 T587 causeOf C/EBP-β,Mediates
R682 T568 T586 themeOf SerpinB2,Transcription
R683 T569 T589 themeOf SerpinB2,induced
R691 T586 T587 themeOf Transcription,Mediates
R692 T586 T588 themeOf Transcription,LPS-Inducible

bionlp-st-ge-2016-test-ihmc

Id Subject Object Predicate Lexical cue
T749 81-99 Protein denotes of Murine SerpinB2
T758 53-99 Transcription denotes LPS-Inducible Transcription of Murine SerpinB2
T723 230-241 Entity denotes macrophages
T739 202-207 Protein denotes PAI-2
T740 150-208 Protein denotes SerpinB2 or plasminogen activator inhibitor type 2 (PAI-2)
T744 162-208 Protein denotes plasminogen activator inhibitor type 2 (PAI-2)
R349 T749 T758 themeOf of Murine SerpinB2,LPS-Inducible Transcription of Murine SerpinB2

bionlp-st-ge-2016-test-tees

Id Subject Object Predicate Lexical cue
T643 219-226 Positive_regulation denotes induced
T642 219-226 Positive_regulation denotes induced
T640 202-207 Protein denotes PAI-2
T636 84-99 Protein denotes Murine SerpinB2
T637 67-80 Transcription denotes Transcription
T638 27-35 Positive_regulation denotes Mediates
T639 162-200 Protein denotes plasminogen activator inhibitor type 2
R322 T640 T643 themeOf PAI-2,induced
R704 T636 T637 themeOf Murine SerpinB2,Transcription
R705 T637 T638 themeOf Transcription,Mediates
R706 T639 T642 themeOf plasminogen activator inhibitor type 2,induced

testone

Id Subject Object Predicate Lexical cue
T20 19-26 Protein denotes C/EBP-β
T21 91-99 Protein denotes SerpinB2
T24 202-207 Protein denotes PAI-2
T23 162-200 Protein denotes plasminogen activator inhibitor type 2
T22 150-158 Protein denotes SerpinB2
R1 T24 T23 equivalentTo PAI-2,plasminogen activator inhibitor type 2

test3

Id Subject Object Predicate Lexical cue
T49 19-26 Protein denotes C/EBP-β
T50 91-99 Protein denotes SerpinB2
T68 19-26 Protein denotes C/EBP-β
T69 91-99 Protein denotes SerpinB2
T73 219-226 Positive_regulation denotes induced
T72 202-207 Protein denotes PAI-2
T71 162-200 Protein denotes plasminogen activator inhibitor type 2
T70 150-158 Protein denotes SerpinB2
T53 202-207 Protein denotes PAI-2
T52 162-200 Protein denotes plasminogen activator inhibitor type 2
T51 150-158 Protein denotes SerpinB2
R15 T71 T73 themeOf plasminogen activator inhibitor type 2,induced
R16 T72 T71 equivalentTo PAI-2,plasminogen activator inhibitor type 2