PMC:3585731 / 576-776
Annnotations
testone
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pmc-enju-pas
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bionlp-st-ge-2016-test-proteins
{"project":"bionlp-st-ge-2016-test-proteins","denotations":[{"id":"T92","span":{"begin":12,"end":16},"obj":"Protein"},{"id":"T93","span":{"begin":71,"end":75},"obj":"Protein"}],"namespaces":[{"prefix":"_base","uri":"http://bionlp.dbcls.jp/ontology/ge.owl#"}],"text":"key role in TNFα production. During necroptosis, Akt is activated in a RIP1 dependent fashion through its phosphorylation on Thr308. In L929 cells, this activation requires independent signaling input"}
bionlp-st-ge-2016-uniprot
{"project":"bionlp-st-ge-2016-uniprot","denotations":[{"id":"T407","span":{"begin":71,"end":75},"obj":"http://www.uniprot.org/uniprot/Q13546"},{"id":"T402","span":{"begin":12,"end":16},"obj":"http://www.uniprot.org/uniprot/P01375"},{"id":"T396","span":{"begin":49,"end":52},"obj":"http://www.uniprot.org/uniprot/Q9Y243"},{"id":"T389","span":{"begin":49,"end":52},"obj":"http://www.uniprot.org/uniprot/P31751"},{"id":"T382","span":{"begin":49,"end":52},"obj":"http://www.uniprot.org/uniprot/P31749"}],"namespaces":[{"prefix":"_base","uri":"http://www.uniprot.org/uniprot/"}],"text":"key role in TNFα production. During necroptosis, Akt is activated in a RIP1 dependent fashion through its phosphorylation on Thr308. In L929 cells, this activation requires independent signaling input"}
GO-BP
{"project":"GO-BP","denotations":[{"id":"T131","span":{"begin":141,"end":163},"obj":"http://purl.obolibrary.org/obo/GO_0001775"},{"id":"T130","span":{"begin":106,"end":121},"obj":"http://purl.obolibrary.org/obo/GO_0016310"},{"id":"T128","span":{"begin":185,"end":194},"obj":"http://purl.obolibrary.org/obo/GO_0023052"},{"id":"T111","span":{"begin":36,"end":47},"obj":"http://purl.obolibrary.org/obo/GO_0097528"},{"id":"T103","span":{"begin":36,"end":47},"obj":"http://purl.obolibrary.org/obo/GO_0070266"}],"text":"key role in TNFα production. During necroptosis, Akt is activated in a RIP1 dependent fashion through its phosphorylation on Thr308. In L929 cells, this activation requires independent signaling input"}
sentences
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simple1
{"project":"simple1","denotations":[{"id":"T147","span":{"begin":12,"end":16},"obj":"Protein"},{"id":"T148","span":{"begin":71,"end":75},"obj":"Protein"}],"text":"key role in TNFα production. During necroptosis, Akt is activated in a RIP1 dependent fashion through its phosphorylation on Thr308. In L929 cells, this activation requires independent signaling input"}
BioNLP16_DUT
{"project":"BioNLP16_DUT","denotations":[{"id":"T357","span":{"begin":12,"end":16},"obj":"Protein"},{"id":"T358","span":{"begin":71,"end":75},"obj":"Protein"},{"id":"T366","span":{"begin":4,"end":8},"obj":"Regulation"},{"id":"T367","span":{"begin":17,"end":27},"obj":"Gene_expression"}],"relations":[{"id":"R452","pred":"themeOf","subj":"T357","obj":"T367"},{"id":"R456","pred":"themeOf","subj":"T367","obj":"T366"}],"text":"key role in TNFα production. During necroptosis, Akt is activated in a RIP1 dependent fashion through its phosphorylation on Thr308. In L929 cells, this activation requires independent signaling input"}
BioNLP16_Messiy
{"project":"BioNLP16_Messiy","denotations":[{"id":"T445","span":{"begin":12,"end":16},"obj":"Protein"},{"id":"T446","span":{"begin":71,"end":75},"obj":"Protein"},{"id":"T454","span":{"begin":17,"end":27},"obj":"Gene_expression"}],"relations":[{"id":"R471","pred":"themeOf","subj":"T445","obj":"T454"}],"text":"key role in TNFα production. During necroptosis, Akt is activated in a RIP1 dependent fashion through its phosphorylation on Thr308. In L929 cells, this activation requires independent signaling input"}
DLUT931
{"project":"DLUT931","denotations":[{"id":"T425","span":{"begin":164,"end":172},"obj":"Positive_regulation"},{"id":"T424","span":{"begin":4,"end":8},"obj":"Regulation"},{"id":"T414","span":{"begin":12,"end":16},"obj":"Protein"},{"id":"T415","span":{"begin":71,"end":75},"obj":"Protein"},{"id":"T423","span":{"begin":17,"end":27},"obj":"Gene_expression"}],"relations":[{"id":"R459","pred":"themeOf","subj":"T414","obj":"T423"},{"id":"R463","pred":"themeOf","subj":"T423","obj":"T424"}],"text":"key role in TNFα production. During necroptosis, Akt is activated in a RIP1 dependent fashion through its phosphorylation on Thr308. In L929 cells, this activation requires independent signaling input"}
bionlp-st-ge-2016-test-ihmc
{"project":"bionlp-st-ge-2016-test-ihmc","denotations":[{"id":"T764","span":{"begin":12,"end":27},"obj":"Gene_expression"},{"id":"T758","span":{"begin":29,"end":131},"obj":"Phosphorylation"},{"id":"T757","span":{"begin":29,"end":131},"obj":"Positive_regulation"},{"id":"T745","span":{"begin":71,"end":85},"obj":"Protein"},{"id":"T737","span":{"begin":122,"end":131},"obj":"Entity"},{"id":"T734","span":{"begin":12,"end":16},"obj":"Protein"},{"id":"T729","span":{"begin":49,"end":52},"obj":"Protein"}],"relations":[{"id":"R433","pred":"siteOf","subj":"T737","obj":"T758"},{"id":"R429","pred":"themeOf","subj":"T729","obj":"T757"},{"id":"R430","pred":"themeOf","subj":"T729","obj":"T758"},{"id":"R431","pred":"themeOf","subj":"T734","obj":"T764"},{"id":"R432","pred":"partOf","subj":"T737","obj":"T729"}],"text":"key role in TNFα production. During necroptosis, Akt is activated in a RIP1 dependent fashion through its phosphorylation on Thr308. In L929 cells, this activation requires independent signaling input"}
bionlp-st-ge-2016-spacy-parsed
{"project":"bionlp-st-ge-2016-spacy-parsed","denotations":[{"id":"T598","span":{"begin":185,"end":194},"obj":"VBG"},{"id":"T597","span":{"begin":173,"end":184},"obj":"JJ"},{"id":"T596","span":{"begin":164,"end":172},"obj":"VBZ"},{"id":"T595","span":{"begin":153,"end":163},"obj":"NN"},{"id":"T594","span":{"begin":148,"end":152},"obj":"DT"},{"id":"T573","span":{"begin":29,"end":35},"obj":"IN"},{"id":"T572","span":{"begin":27,"end":28},"obj":"."},{"id":"T571","span":{"begin":17,"end":27},"obj":"NN"},{"id":"T570","span":{"begin":12,"end":16},"obj":"JJ"},{"id":"T569","span":{"begin":9,"end":11},"obj":"IN"},{"id":"T568","span":{"begin":4,"end":8},"obj":"NN"},{"id":"T567","span":{"begin":0,"end":3},"obj":"JJ"},{"id":"T593","span":{"begin":146,"end":147},"obj":","},{"id":"T592","span":{"begin":141,"end":146},"obj":"NNS"},{"id":"T591","span":{"begin":136,"end":140},"obj":"CD"},{"id":"T590","span":{"begin":133,"end":135},"obj":"IN"},{"id":"T589","span":{"begin":131,"end":132},"obj":"."},{"id":"T588","span":{"begin":125,"end":131},"obj":"NNP"},{"id":"T587","span":{"begin":122,"end":124},"obj":"IN"},{"id":"T586","span":{"begin":106,"end":121},"obj":"NN"},{"id":"T585","span":{"begin":102,"end":105},"obj":"PRP$"},{"id":"T584","span":{"begin":94,"end":101},"obj":"IN"},{"id":"T583","span":{"begin":86,"end":93},"obj":"NN"},{"id":"T582","span":{"begin":76,"end":85},"obj":"JJ"},{"id":"T581","span":{"begin":71,"end":75},"obj":"NNP"},{"id":"T580","span":{"begin":69,"end":70},"obj":"DT"},{"id":"T579","span":{"begin":66,"end":68},"obj":"IN"},{"id":"T578","span":{"begin":56,"end":65},"obj":"VBN"},{"id":"T577","span":{"begin":53,"end":55},"obj":"VBZ"},{"id":"T576","span":{"begin":49,"end":52},"obj":"NNP"},{"id":"T575","span":{"begin":47,"end":48},"obj":","},{"id":"T574","span":{"begin":36,"end":47},"obj":"NN"}],"relations":[{"id":"R307","pred":"amod","subj":"T567","obj":"T568"},{"id":"R309","pred":"prep","subj":"T569","obj":"T568"},{"id":"R310","pred":"amod","subj":"T570","obj":"T571"},{"id":"R311","pred":"pobj","subj":"T571","obj":"T569"},{"id":"R313","pred":"prep","subj":"T573","obj":"T578"},{"id":"R314","pred":"pobj","subj":"T574","obj":"T573"},{"id":"R315","pred":"punct","subj":"T575","obj":"T578"},{"id":"R316","pred":"nsubjpass","subj":"T576","obj":"T578"},{"id":"R317","pred":"auxpass","subj":"T577","obj":"T578"},{"id":"R318","pred":"ROOT","subj":"T578","obj":"T578"},{"id":"R319","pred":"prep","subj":"T579","obj":"T578"},{"id":"R320","pred":"det","subj":"T580","obj":"T583"},{"id":"R321","pred":"nmod","subj":"T581","obj":"T583"},{"id":"R322","pred":"amod","subj":"T582","obj":"T583"},{"id":"R323","pred":"pobj","subj":"T583","obj":"T579"},{"id":"R324","pred":"prep","subj":"T584","obj":"T578"},{"id":"R325","pred":"poss","subj":"T585","obj":"T586"},{"id":"R326","pred":"pobj","subj":"T586","obj":"T584"},{"id":"R327","pred":"prep","subj":"T587","obj":"T586"},{"id":"R328","pred":"pobj","subj":"T588","obj":"T587"},{"id":"R329","pred":"punct","subj":"T589","obj":"T578"},{"id":"R330","pred":"prep","subj":"T590","obj":"T596"},{"id":"R331","pred":"nummod","subj":"T591","obj":"T592"},{"id":"R332","pred":"pobj","subj":"T592","obj":"T590"},{"id":"R333","pred":"punct","subj":"T593","obj":"T596"},{"id":"R334","pred":"det","subj":"T594","obj":"T595"},{"id":"R335","pred":"nsubj","subj":"T595","obj":"T596"},{"id":"R336","pred":"ROOT","subj":"T596","obj":"T596"}],"text":"key role in TNFα production. During necroptosis, Akt is activated in a RIP1 dependent fashion through its phosphorylation on Thr308. In L929 cells, this activation requires independent signaling input"}
bionlp-st-ge-2016-test-tees
{"project":"bionlp-st-ge-2016-test-tees","denotations":[{"id":"T474","span":{"begin":56,"end":65},"obj":"Positive_regulation"},{"id":"T473","span":{"begin":106,"end":121},"obj":"Phosphorylation"},{"id":"T472","span":{"begin":56,"end":65},"obj":"Positive_regulation"},{"id":"T471","span":{"begin":125,"end":131},"obj":"Protein"},{"id":"T470","span":{"begin":71,"end":75},"obj":"Protein"},{"id":"T469","span":{"begin":49,"end":52},"obj":"Protein"},{"id":"T468","span":{"begin":17,"end":27},"obj":"Gene_expression"},{"id":"T467","span":{"begin":12,"end":16},"obj":"Protein"}],"relations":[{"id":"R218","pred":"themeOf","subj":"T467","obj":"T468"},{"id":"R219","pred":"themeOf","subj":"T469","obj":"T472"},{"id":"R220","pred":"themeOf","subj":"T471","obj":"T473"},{"id":"R221","pred":"themeOf","subj":"T473","obj":"T474"}],"text":"key role in TNFα production. During necroptosis, Akt is activated in a RIP1 dependent fashion through its phosphorylation on Thr308. In L929 cells, this activation requires independent signaling input"}
test3
{"project":"test3","denotations":[{"id":"T51","span":{"begin":106,"end":121},"obj":"Phosphorylation"},{"id":"T50","span":{"begin":71,"end":75},"obj":"Protein"},{"id":"T49","span":{"begin":56,"end":65},"obj":"Positive_regulation"},{"id":"T48","span":{"begin":17,"end":27},"obj":"Gene_expression"},{"id":"T47","span":{"begin":12,"end":16},"obj":"Protein"},{"id":"T46","span":{"begin":4,"end":8},"obj":"Regulation"},{"id":"T34","span":{"begin":71,"end":75},"obj":"Protein"},{"id":"T33","span":{"begin":12,"end":16},"obj":"Protein"}],"relations":[{"id":"R10","pred":"themeOf","subj":"T47","obj":"T48"},{"id":"R11","pred":"themeOf","subj":"T48","obj":"T46"},{"id":"R12","pred":"themeOf","subj":"T50","obj":"T49"}],"text":"key role in TNFα production. During necroptosis, Akt is activated in a RIP1 dependent fashion through its phosphorylation on Thr308. In L929 cells, this activation requires independent signaling input"}