> top > docs > PMC:3585731 > spans > 576-776 > annotations

PMC:3585731 / 576-776 JSONTXT

Annnotations TAB JSON ListView MergeView

testone

Id Subject Object Predicate Lexical cue
T26 106-121 Phosphorylation denotes phosphorylation
T25 76-85 Regulation denotes dependent
T24 56-65 Positive_regulation denotes activated
T23 17-27 Gene_expression denotes production
T22 4-8 Regulation denotes role
T16 71-75 Protein denotes RIP1
T15 12-16 Protein denotes TNFα
R5 T23 T22 themeOf production,role
R2 T15 T23 themeOf TNFα,production

pmc-enju-pas

Id Subject Object Predicate Lexical cue
T260 185-194 NN denotes signaling
T259 173-184 JJ denotes independent
T258 164-172 VB denotes requires
T257 153-163 NN denotes activation
T256 148-152 DT denotes this
T255 146-147 -COMMA- denotes ,
T254 141-146 NN denotes cells
T253 136-140 NN denotes L929
T252 133-135 IN denotes In
T251 125-131 NN denotes Thr308
T250 122-124 IN denotes on
T249 106-121 NN denotes phosphorylation
T248 102-105 PRP-DOLLAR- denotes its
T247 94-101 IN denotes through
T246 86-93 NN denotes fashion
T245 76-85 JJ denotes dependent
T244 71-75 NN denotes RIP1
T243 69-70 DT denotes a
T242 66-68 IN denotes in
T241 56-65 VB denotes activated
T240 53-55 VB denotes is
T239 49-52 NN denotes Akt
T238 47-48 -COMMA- denotes ,
T237 36-47 NN denotes necroptosis
T236 29-35 IN denotes During
T235 17-27 NN denotes production
T234 12-16 NN denotes TNFα
T233 9-11 IN denotes in
T232 4-8 NN denotes role
T231 0-3 JJ denotes key
R95 T232 T231 arg1Of role,key
R96 T235 T233 arg2Of production,in
R97 T235 T234 arg1Of production,TNFα
R98 T237 T236 arg2Of necroptosis,During
R99 T239 T240 arg1Of Akt,is
R100 T239 T241 arg2Of Akt,activated
R101 T241 T236 arg1Of activated,During
R102 T241 T238 arg1Of activated,","
R103 T241 T240 arg2Of activated,is
R104 T241 T242 arg1Of activated,in
R105 T241 T247 arg1Of activated,through
R106 T245 T244 arg1Of dependent,RIP1
R107 T246 T242 arg2Of fashion,in
R108 T246 T243 arg1Of fashion,a
R109 T246 T245 arg1Of fashion,dependent
R110 T249 T247 arg2Of phosphorylation,through
R111 T249 T248 arg1Of phosphorylation,its
R112 T249 T250 arg1Of phosphorylation,on
R113 T251 T250 arg2Of Thr308,on
R114 T254 T252 arg2Of cells,In
R115 T254 T253 arg1Of cells,L929
R116 T257 T256 arg1Of activation,this
R117 T257 T258 arg1Of activation,requires
R118 T258 T252 arg1Of requires,In
R119 T258 T255 arg1Of requires,","

bionlp-st-ge-2016-test-proteins

Id Subject Object Predicate Lexical cue
T92 12-16 Protein denotes TNFα
T93 71-75 Protein denotes RIP1

bionlp-st-ge-2016-uniprot

Id Subject Object Predicate Lexical cue
T407 71-75 http://www.uniprot.org/uniprot/Q13546 denotes RIP1
T402 12-16 http://www.uniprot.org/uniprot/P01375 denotes TNFα
T396 49-52 http://www.uniprot.org/uniprot/Q9Y243 denotes Akt
T389 49-52 http://www.uniprot.org/uniprot/P31751 denotes Akt
T382 49-52 http://www.uniprot.org/uniprot/P31749 denotes Akt

GO-BP

Id Subject Object Predicate Lexical cue
T131 141-163 http://purl.obolibrary.org/obo/GO_0001775 denotes cells, this activation
T130 106-121 http://purl.obolibrary.org/obo/GO_0016310 denotes phosphorylation
T128 185-194 http://purl.obolibrary.org/obo/GO_0023052 denotes signaling
T111 36-47 http://purl.obolibrary.org/obo/GO_0097528 denotes necroptosis
T103 36-47 http://purl.obolibrary.org/obo/GO_0070266 denotes necroptosis

sentences

Id Subject Object Predicate Lexical cue
T64 29-132 Sentence denotes During necroptosis, Akt is activated in a RIP1 dependent fashion through its phosphorylation on Thr308.
T7 29-132 Sentence denotes During necroptosis, Akt is activated in a RIP1 dependent fashion through its phosphorylation on Thr308.

simple1

Id Subject Object Predicate Lexical cue
T147 12-16 Protein denotes TNFα
T148 71-75 Protein denotes RIP1

BioNLP16_DUT

Id Subject Object Predicate Lexical cue
T357 12-16 Protein denotes TNFα
T358 71-75 Protein denotes RIP1
T366 4-8 Regulation denotes role
T367 17-27 Gene_expression denotes production
R452 T357 T367 themeOf TNFα,production
R456 T367 T366 themeOf production,role

BioNLP16_Messiy

Id Subject Object Predicate Lexical cue
T445 12-16 Protein denotes TNFα
T446 71-75 Protein denotes RIP1
T454 17-27 Gene_expression denotes production
R471 T445 T454 themeOf TNFα,production

DLUT931

Id Subject Object Predicate Lexical cue
T425 164-172 Positive_regulation denotes requires
T424 4-8 Regulation denotes role
T414 12-16 Protein denotes TNFα
T415 71-75 Protein denotes RIP1
T423 17-27 Gene_expression denotes production
R459 T414 T423 themeOf TNFα,production
R463 T423 T424 themeOf production,role

bionlp-st-ge-2016-test-ihmc

Id Subject Object Predicate Lexical cue
T764 12-27 Gene_expression denotes TNFα production
T758 29-131 Phosphorylation denotes During necroptosis, Akt is activated in a RIP1 dependent fashion through its phosphorylation on Thr308
T757 29-131 Positive_regulation denotes During necroptosis, Akt is activated in a RIP1 dependent fashion through its phosphorylation on Thr308
T745 71-85 Protein denotes RIP1 dependent
T737 122-131 Entity denotes on Thr308
T734 12-16 Protein denotes TNFα
T729 49-52 Protein denotes Akt
R433 T737 T758 siteOf on Thr308,"During necroptosis, Akt is activated in a RIP1 dependent fashion through its phosphorylation on Thr308"
R429 T729 T757 themeOf Akt,"During necroptosis, Akt is activated in a RIP1 dependent fashion through its phosphorylation on Thr308"
R430 T729 T758 themeOf Akt,"During necroptosis, Akt is activated in a RIP1 dependent fashion through its phosphorylation on Thr308"
R431 T734 T764 themeOf TNFα,TNFα production
R432 T737 T729 partOf on Thr308,Akt

bionlp-st-ge-2016-spacy-parsed

Id Subject Object Predicate Lexical cue
T598 185-194 VBG denotes signaling
T597 173-184 JJ denotes independent
T596 164-172 VBZ denotes requires
T595 153-163 NN denotes activation
T594 148-152 DT denotes this
T573 29-35 IN denotes During
T572 27-28 . denotes .
T571 17-27 NN denotes production
T570 12-16 JJ denotes TNFα
T569 9-11 IN denotes in
T568 4-8 NN denotes role
T567 0-3 JJ denotes key
T593 146-147 , denotes ,
T592 141-146 NNS denotes cells
T591 136-140 CD denotes L929
T590 133-135 IN denotes In
T589 131-132 . denotes .
T588 125-131 NNP denotes Thr308
T587 122-124 IN denotes on
T586 106-121 NN denotes phosphorylation
T585 102-105 PRP$ denotes its
T584 94-101 IN denotes through
T583 86-93 NN denotes fashion
T582 76-85 JJ denotes dependent
T581 71-75 NNP denotes RIP1
T580 69-70 DT denotes a
T579 66-68 IN denotes in
T578 56-65 VBN denotes activated
T577 53-55 VBZ denotes is
T576 49-52 NNP denotes Akt
T575 47-48 , denotes ,
T574 36-47 NN denotes necroptosis
R307 T567 T568 amod key,role
R309 T569 T568 prep in,role
R310 T570 T571 amod TNFα,production
R311 T571 T569 pobj production,in
R313 T573 T578 prep During,activated
R314 T574 T573 pobj necroptosis,During
R315 T575 T578 punct ",",activated
R316 T576 T578 nsubjpass Akt,activated
R317 T577 T578 auxpass is,activated
R318 T578 T578 ROOT activated,activated
R319 T579 T578 prep in,activated
R320 T580 T583 det a,fashion
R321 T581 T583 nmod RIP1,fashion
R322 T582 T583 amod dependent,fashion
R323 T583 T579 pobj fashion,in
R324 T584 T578 prep through,activated
R325 T585 T586 poss its,phosphorylation
R326 T586 T584 pobj phosphorylation,through
R327 T587 T586 prep on,phosphorylation
R328 T588 T587 pobj Thr308,on
R329 T589 T578 punct .,activated
R330 T590 T596 prep In,requires
R331 T591 T592 nummod L929,cells
R332 T592 T590 pobj cells,In
R333 T593 T596 punct ",",requires
R334 T594 T595 det this,activation
R335 T595 T596 nsubj activation,requires
R336 T596 T596 ROOT requires,requires

bionlp-st-ge-2016-test-tees

Id Subject Object Predicate Lexical cue
T474 56-65 Positive_regulation denotes activated
T473 106-121 Phosphorylation denotes phosphorylation
T472 56-65 Positive_regulation denotes activated
T471 125-131 Protein denotes Thr308
T470 71-75 Protein denotes RIP1
T469 49-52 Protein denotes Akt
T468 17-27 Gene_expression denotes production
T467 12-16 Protein denotes TNFα
R218 T467 T468 themeOf TNFα,production
R219 T469 T472 themeOf Akt,activated
R220 T471 T473 themeOf Thr308,phosphorylation
R221 T473 T474 themeOf phosphorylation,activated

test3

Id Subject Object Predicate Lexical cue
T51 106-121 Phosphorylation denotes phosphorylation
T50 71-75 Protein denotes RIP1
T49 56-65 Positive_regulation denotes activated
T48 17-27 Gene_expression denotes production
T47 12-16 Protein denotes TNFα
T46 4-8 Regulation denotes role
T34 71-75 Protein denotes RIP1
T33 12-16 Protein denotes TNFα
R10 T47 T48 themeOf TNFα,production
R11 T48 T46 themeOf production,role
R12 T50 T49 themeOf RIP1,activated