PMC:3342329 / 956-1151
Annnotations
test3
{"project":"test3","denotations":[{"id":"T103","span":{"begin":181,"end":185},"obj":"Protein"},{"id":"T102","span":{"begin":144,"end":153},"obj":"Negative_regulation"},{"id":"T101","span":{"begin":132,"end":138},"obj":"Protein"},{"id":"T73","span":{"begin":181,"end":185},"obj":"Protein"},{"id":"T72","span":{"begin":132,"end":138},"obj":"Protein"}],"text":"ion, such as cleaved caspase-3, cleaved PARP, and Bax, was elevated, whereas the survival protein expression levels, such as Bcl-2, C-IAP1, was decreased in the melanoma tissues of CCR5−/− mice. "}
testone
{"project":"testone","denotations":[{"id":"T37","span":{"begin":181,"end":185},"obj":"Protein"},{"id":"T36","span":{"begin":132,"end":138},"obj":"Protein"},{"id":"T55","span":{"begin":144,"end":153},"obj":"Negative_regulation"},{"id":"T54","span":{"begin":98,"end":108},"obj":"Gene_expression"},{"id":"T53","span":{"begin":13,"end":20},"obj":"Phosphorylation"}],"relations":[{"id":"R7","pred":"themeOf","subj":"T36","obj":"T55"},{"id":"R8","pred":"themeOf","subj":"T36","obj":"T54"},{"id":"R13","pred":"themeOf","subj":"T54","obj":"T55"}],"text":"ion, such as cleaved caspase-3, cleaved PARP, and Bax, was elevated, whereas the survival protein expression levels, such as Bcl-2, C-IAP1, was decreased in the melanoma tissues of CCR5−/− mice. "}
BioNLP16_Messiy
{"project":"BioNLP16_Messiy","denotations":[{"id":"T643","span":{"begin":144,"end":153},"obj":"Negative_regulation"},{"id":"T642","span":{"begin":98,"end":108},"obj":"Gene_expression"},{"id":"T629","span":{"begin":181,"end":185},"obj":"Protein"},{"id":"T628","span":{"begin":132,"end":138},"obj":"Protein"}],"relations":[{"id":"R344","pred":"themeOf","subj":"T628","obj":"T642"},{"id":"R345","pred":"themeOf","subj":"T628","obj":"T643"}],"text":"ion, such as cleaved caspase-3, cleaved PARP, and Bax, was elevated, whereas the survival protein expression levels, such as Bcl-2, C-IAP1, was decreased in the melanoma tissues of CCR5−/− mice. "}
BioNLP16_DUT
{"project":"BioNLP16_DUT","denotations":[{"id":"T769","span":{"begin":98,"end":108},"obj":"Gene_expression"},{"id":"T768","span":{"begin":144,"end":153},"obj":"Negative_regulation"},{"id":"T755","span":{"begin":181,"end":185},"obj":"Protein"},{"id":"T754","span":{"begin":132,"end":138},"obj":"Protein"}],"relations":[{"id":"R413","pred":"themeOf","subj":"T754","obj":"T769"},{"id":"R414","pred":"themeOf","subj":"T754","obj":"T768"},{"id":"R418","pred":"themeOf","subj":"T769","obj":"T768"}],"text":"ion, such as cleaved caspase-3, cleaved PARP, and Bax, was elevated, whereas the survival protein expression levels, such as Bcl-2, C-IAP1, was decreased in the melanoma tissues of CCR5−/− mice. "}
pmc-enju-pas
{"project":"pmc-enju-pas","denotations":[{"id":"T443","span":{"begin":189,"end":193},"obj":"NN"},{"id":"T442","span":{"begin":181,"end":188},"obj":"NN"},{"id":"T441","span":{"begin":178,"end":180},"obj":"IN"},{"id":"T440","span":{"begin":170,"end":177},"obj":"NN"},{"id":"T439","span":{"begin":161,"end":169},"obj":"NN"},{"id":"T438","span":{"begin":157,"end":160},"obj":"DT"},{"id":"T437","span":{"begin":154,"end":156},"obj":"IN"},{"id":"T436","span":{"begin":144,"end":153},"obj":"VB"},{"id":"T435","span":{"begin":140,"end":143},"obj":"VB"},{"id":"T434","span":{"begin":138,"end":139},"obj":"-COMMA-"},{"id":"T433","span":{"begin":132,"end":138},"obj":"NN"},{"id":"T432","span":{"begin":130,"end":131},"obj":"-COMMA-"},{"id":"T431","span":{"begin":125,"end":130},"obj":"NN"},{"id":"T430","span":{"begin":122,"end":124},"obj":"IN"},{"id":"T429","span":{"begin":117,"end":121},"obj":"JJ"},{"id":"T428","span":{"begin":115,"end":116},"obj":"-COMMA-"},{"id":"T427","span":{"begin":109,"end":115},"obj":"NN"},{"id":"T426","span":{"begin":98,"end":108},"obj":"NN"},{"id":"T425","span":{"begin":90,"end":97},"obj":"NN"},{"id":"T424","span":{"begin":81,"end":89},"obj":"NN"},{"id":"T423","span":{"begin":77,"end":80},"obj":"DT"},{"id":"T422","span":{"begin":69,"end":76},"obj":"IN"},{"id":"T421","span":{"begin":67,"end":68},"obj":"-COMMA-"},{"id":"T420","span":{"begin":59,"end":67},"obj":"VB"},{"id":"T419","span":{"begin":55,"end":58},"obj":"VB"},{"id":"T418","span":{"begin":53,"end":54},"obj":"-COMMA-"},{"id":"T417","span":{"begin":50,"end":53},"obj":"NN"},{"id":"T416","span":{"begin":46,"end":49},"obj":"CC"},{"id":"T415","span":{"begin":44,"end":45},"obj":"-COMMA-"},{"id":"T414","span":{"begin":40,"end":44},"obj":"NN"},{"id":"T413","span":{"begin":32,"end":39},"obj":"VB"},{"id":"T412","span":{"begin":30,"end":31},"obj":"-COMMA-"},{"id":"T411","span":{"begin":21,"end":30},"obj":"NN"},{"id":"T410","span":{"begin":13,"end":20},"obj":"VB"},{"id":"T409","span":{"begin":10,"end":12},"obj":"IN"},{"id":"T408","span":{"begin":5,"end":9},"obj":"JJ"},{"id":"T407","span":{"begin":3,"end":4},"obj":"-COMMA-"}],"relations":[{"id":"R191","pred":"arg1Of","subj":"T409","obj":"T408"},{"id":"R192","pred":"arg2Of","subj":"T411","obj":"T410"},{"id":"R193","pred":"arg2Of","subj":"T411","obj":"T413"},{"id":"R194","pred":"arg1Of","subj":"T411","obj":"T416"},{"id":"R195","pred":"arg1Of","subj":"T413","obj":"T412"},{"id":"R196","pred":"arg3Of","subj":"T414","obj":"T413"},{"id":"R197","pred":"arg2Of","subj":"T416","obj":"T409"},{"id":"R198","pred":"arg1Of","subj":"T416","obj":"T415"},{"id":"R199","pred":"arg2Of","subj":"T417","obj":"T416"},{"id":"R200","pred":"arg1Of","subj":"T420","obj":"T418"},{"id":"R201","pred":"arg2Of","subj":"T420","obj":"T419"},{"id":"R202","pred":"arg1Of","subj":"T420","obj":"T421"},{"id":"R203","pred":"arg1Of","subj":"T420","obj":"T422"},{"id":"R204","pred":"arg1Of","subj":"T427","obj":"T423"},{"id":"R205","pred":"arg1Of","subj":"T427","obj":"T424"},{"id":"R206","pred":"arg1Of","subj":"T427","obj":"T425"},{"id":"R207","pred":"arg1Of","subj":"T427","obj":"T426"},{"id":"R208","pred":"arg1Of","subj":"T427","obj":"T428"},{"id":"R209","pred":"arg1Of","subj":"T427","obj":"T430"},{"id":"R210","pred":"arg1Of","subj":"T427","obj":"T435"},{"id":"R211","pred":"arg2Of","subj":"T427","obj":"T436"},{"id":"R212","pred":"arg1Of","subj":"T430","obj":"T429"},{"id":"R213","pred":"arg2Of","subj":"T431","obj":"T430"},{"id":"R214","pred":"arg1Of","subj":"T431","obj":"T432"},{"id":"R215","pred":"arg2Of","subj":"T433","obj":"T432"},{"id":"R216","pred":"arg2Of","subj":"T436","obj":"T422"},{"id":"R217","pred":"arg1Of","subj":"T436","obj":"T434"},{"id":"R218","pred":"arg2Of","subj":"T436","obj":"T435"},{"id":"R219","pred":"arg1Of","subj":"T436","obj":"T437"},{"id":"R220","pred":"arg2Of","subj":"T440","obj":"T437"},{"id":"R221","pred":"arg1Of","subj":"T440","obj":"T438"},{"id":"R222","pred":"arg1Of","subj":"T440","obj":"T439"},{"id":"R223","pred":"arg1Of","subj":"T440","obj":"T441"},{"id":"R224","pred":"arg2Of","subj":"T443","obj":"T441"},{"id":"R225","pred":"arg1Of","subj":"T443","obj":"T442"}],"namespaces":[{"prefix":"_base","uri":"http://kmcs.nii.ac.jp/enju/"}],"text":"ion, such as cleaved caspase-3, cleaved PARP, and Bax, was elevated, whereas the survival protein expression levels, such as Bcl-2, C-IAP1, was decreased in the melanoma tissues of CCR5−/− mice. "}
bionlp-st-ge-2016-test-proteins
{"project":"bionlp-st-ge-2016-test-proteins","denotations":[{"id":"T179","span":{"begin":181,"end":185},"obj":"Protein"},{"id":"T178","span":{"begin":132,"end":138},"obj":"Protein"}],"namespaces":[{"prefix":"_base","uri":"http://bionlp.dbcls.jp/ontology/ge.owl#"}],"text":"ion, such as cleaved caspase-3, cleaved PARP, and Bax, was elevated, whereas the survival protein expression levels, such as Bcl-2, C-IAP1, was decreased in the melanoma tissues of CCR5−/− mice. "}
bionlp-st-ge-2016-uniprot
{"project":"bionlp-st-ge-2016-uniprot","denotations":[{"id":"T552","span":{"begin":132,"end":138},"obj":"http://www.uniprot.org/uniprot/Q13490"},{"id":"T551","span":{"begin":21,"end":30},"obj":"http://www.uniprot.org/uniprot/P42574"},{"id":"T542","span":{"begin":181,"end":185},"obj":"http://www.uniprot.org/uniprot/P51681"}],"namespaces":[{"prefix":"_base","uri":"http://www.uniprot.org/uniprot/"}],"text":"ion, such as cleaved caspase-3, cleaved PARP, and Bax, was elevated, whereas the survival protein expression levels, such as Bcl-2, C-IAP1, was decreased in the melanoma tissues of CCR5−/− mice. "}
UBERON-AE
{"project":"UBERON-AE","denotations":[{"id":"T115","span":{"begin":170,"end":177},"obj":"http://purl.obolibrary.org/obo/UBERON_0000479"}],"text":"ion, such as cleaved caspase-3, cleaved PARP, and Bax, was elevated, whereas the survival protein expression levels, such as Bcl-2, C-IAP1, was decreased in the melanoma tissues of CCR5−/− mice. "}
simple1
{"project":"simple1","denotations":[{"id":"T252","span":{"begin":181,"end":185},"obj":"Protein"},{"id":"T251","span":{"begin":132,"end":138},"obj":"Protein"}],"text":"ion, such as cleaved caspase-3, cleaved PARP, and Bax, was elevated, whereas the survival protein expression levels, such as Bcl-2, C-IAP1, was decreased in the melanoma tissues of CCR5−/− mice. "}
DLUT931
{"project":"DLUT931","denotations":[{"id":"T583","span":{"begin":144,"end":153},"obj":"Negative_regulation"},{"id":"T582","span":{"begin":98,"end":108},"obj":"Gene_expression"},{"id":"T569","span":{"begin":181,"end":185},"obj":"Protein"},{"id":"T568","span":{"begin":132,"end":138},"obj":"Protein"}],"relations":[{"id":"R320","pred":"themeOf","subj":"T568","obj":"T582"},{"id":"R326","pred":"themeOf","subj":"T582","obj":"T583"}],"text":"ion, such as cleaved caspase-3, cleaved PARP, and Bax, was elevated, whereas the survival protein expression levels, such as Bcl-2, C-IAP1, was decreased in the melanoma tissues of CCR5−/− mice. "}
bionlp-st-ge-2016-test-ihmc
{"project":"bionlp-st-ge-2016-test-ihmc","denotations":[{"id":"T819","span":{"begin":13,"end":45},"obj":"Protein_catabolism"},{"id":"T816","span":{"begin":90,"end":108},"obj":"Gene_expression"},{"id":"T813","span":{"begin":90,"end":97},"obj":"Protein"},{"id":"T812","span":{"begin":189,"end":193},"obj":"Protein"},{"id":"T811","span":{"begin":125,"end":130},"obj":"Protein"},{"id":"T806","span":{"begin":132,"end":139},"obj":"Protein"},{"id":"T805","span":{"begin":40,"end":44},"obj":"Protein"},{"id":"T799","span":{"begin":50,"end":53},"obj":"Protein"},{"id":"T795","span":{"begin":13,"end":45},"obj":"Protein"}],"relations":[{"id":"R421","pred":"themeOf","subj":"T795","obj":"T819"},{"id":"R424","pred":"themeOf","subj":"T813","obj":"T816"}],"text":"ion, such as cleaved caspase-3, cleaved PARP, and Bax, was elevated, whereas the survival protein expression levels, such as Bcl-2, C-IAP1, was decreased in the melanoma tissues of CCR5−/− mice. "}
bionlp-st-ge-2016-spacy-parsed
{"project":"bionlp-st-ge-2016-spacy-parsed","denotations":[{"id":"T1031","span":{"begin":193,"end":194},"obj":"."},{"id":"T1030","span":{"begin":189,"end":193},"obj":"NNS"},{"id":"T1029","span":{"begin":187,"end":188},"obj":"NN"},{"id":"T1028","span":{"begin":186,"end":187},"obj":"NN"},{"id":"T1027","span":{"begin":185,"end":186},"obj":"CD"},{"id":"T1026","span":{"begin":181,"end":185},"obj":"CD"},{"id":"T1025","span":{"begin":178,"end":180},"obj":"IN"},{"id":"T1024","span":{"begin":170,"end":177},"obj":"NNS"},{"id":"T1023","span":{"begin":161,"end":169},"obj":"NN"},{"id":"T1022","span":{"begin":157,"end":160},"obj":"DT"},{"id":"T1021","span":{"begin":154,"end":156},"obj":"IN"},{"id":"T1020","span":{"begin":144,"end":153},"obj":"VBN"},{"id":"T1019","span":{"begin":140,"end":143},"obj":"VBD"},{"id":"T1018","span":{"begin":138,"end":139},"obj":","},{"id":"T1017","span":{"begin":132,"end":138},"obj":"NNP"},{"id":"T1016","span":{"begin":130,"end":131},"obj":","},{"id":"T1015","span":{"begin":125,"end":130},"obj":"NN"},{"id":"T1014","span":{"begin":122,"end":124},"obj":"IN"},{"id":"T1013","span":{"begin":117,"end":121},"obj":"JJ"},{"id":"T1012","span":{"begin":115,"end":116},"obj":","},{"id":"T1011","span":{"begin":109,"end":115},"obj":"NNS"},{"id":"T1010","span":{"begin":98,"end":108},"obj":"NN"},{"id":"T1009","span":{"begin":90,"end":97},"obj":"NN"},{"id":"T1008","span":{"begin":81,"end":89},"obj":"NN"},{"id":"T1007","span":{"begin":77,"end":80},"obj":"DT"},{"id":"T1006","span":{"begin":69,"end":76},"obj":"IN"},{"id":"T1005","span":{"begin":67,"end":68},"obj":","},{"id":"T1004","span":{"begin":59,"end":67},"obj":"VBN"},{"id":"T1003","span":{"begin":55,"end":58},"obj":"VBD"},{"id":"T1002","span":{"begin":53,"end":54},"obj":","},{"id":"T1001","span":{"begin":50,"end":53},"obj":"NNP"},{"id":"T1000","span":{"begin":46,"end":49},"obj":"CC"},{"id":"T999","span":{"begin":44,"end":45},"obj":","},{"id":"T998","span":{"begin":40,"end":44},"obj":"NNP"},{"id":"T997","span":{"begin":32,"end":39},"obj":"JJ"},{"id":"T996","span":{"begin":30,"end":31},"obj":","},{"id":"T995","span":{"begin":21,"end":30},"obj":"JJ"},{"id":"T994","span":{"begin":13,"end":20},"obj":"JJ"},{"id":"T993","span":{"begin":10,"end":12},"obj":"IN"},{"id":"T992","span":{"begin":5,"end":9},"obj":"JJ"},{"id":"T991","span":{"begin":3,"end":4},"obj":","}],"relations":[{"id":"R597","pred":"amod","subj":"T992","obj":"T993"},{"id":"R599","pred":"nsubjpass","subj":"T994","obj":"T1004"},{"id":"R600","pred":"nsubjpass","subj":"T995","obj":"T1004"},{"id":"R601","pred":"punct","subj":"T996","obj":"T998"},{"id":"R602","pred":"compound","subj":"T997","obj":"T998"},{"id":"R603","pred":"appos","subj":"T998","obj":"T995"},{"id":"R604","pred":"punct","subj":"T999","obj":"T998"},{"id":"R605","pred":"cc","subj":"T1000","obj":"T998"},{"id":"R606","pred":"conj","subj":"T1001","obj":"T998"},{"id":"R607","pred":"punct","subj":"T1002","obj":"T1004"},{"id":"R608","pred":"auxpass","subj":"T1003","obj":"T1004"},{"id":"R609","pred":"ROOT","subj":"T1004","obj":"T1004"},{"id":"R610","pred":"punct","subj":"T1005","obj":"T1004"},{"id":"R611","pred":"mark","subj":"T1006","obj":"T1020"},{"id":"R612","pred":"det","subj":"T1007","obj":"T1011"},{"id":"R613","pred":"compound","subj":"T1008","obj":"T1009"},{"id":"R614","pred":"compound","subj":"T1009","obj":"T1011"},{"id":"R615","pred":"compound","subj":"T1010","obj":"T1011"},{"id":"R616","pred":"nsubjpass","subj":"T1011","obj":"T1020"},{"id":"R617","pred":"punct","subj":"T1012","obj":"T1011"},{"id":"R618","pred":"amod","subj":"T1013","obj":"T1014"},{"id":"R619","pred":"prep","subj":"T1014","obj":"T1011"},{"id":"R620","pred":"pobj","subj":"T1015","obj":"T1014"},{"id":"R621","pred":"punct","subj":"T1016","obj":"T1015"},{"id":"R622","pred":"conj","subj":"T1017","obj":"T1015"},{"id":"R623","pred":"punct","subj":"T1018","obj":"T1020"},{"id":"R624","pred":"auxpass","subj":"T1019","obj":"T1020"},{"id":"R625","pred":"advcl","subj":"T1020","obj":"T1004"},{"id":"R626","pred":"prep","subj":"T1021","obj":"T1020"},{"id":"R627","pred":"det","subj":"T1022","obj":"T1024"},{"id":"R629","pred":"compound","subj":"T1023","obj":"T1024"},{"id":"R630","pred":"pobj","subj":"T1024","obj":"T1021"},{"id":"R631","pred":"prep","subj":"T1025","obj":"T1024"},{"id":"R632","pred":"nummod","subj":"T1026","obj":"T1030"},{"id":"R633","pred":"nummod","subj":"T1027","obj":"T1030"},{"id":"R634","pred":"nmod","subj":"T1028","obj":"T1030"},{"id":"R635","pred":"compound","subj":"T1029","obj":"T1030"},{"id":"R636","pred":"pobj","subj":"T1030","obj":"T1025"},{"id":"R637","pred":"punct","subj":"T1031","obj":"T1004"}],"text":"ion, such as cleaved caspase-3, cleaved PARP, and Bax, was elevated, whereas the survival protein expression levels, such as Bcl-2, C-IAP1, was decreased in the melanoma tissues of CCR5−/− mice. "}
bionlp-st-ge-2016-test-tees
{"project":"bionlp-st-ge-2016-test-tees","denotations":[{"id":"T680","span":{"begin":144,"end":153},"obj":"Negative_regulation"},{"id":"T679","span":{"begin":98,"end":108},"obj":"Gene_expression"},{"id":"T678","span":{"begin":59,"end":67},"obj":"Positive_regulation"},{"id":"T677","span":{"begin":59,"end":67},"obj":"Positive_regulation"},{"id":"T674","span":{"begin":125,"end":138},"obj":"Protein"},{"id":"T673","span":{"begin":50,"end":53},"obj":"Protein"},{"id":"T672","span":{"begin":40,"end":44},"obj":"Protein"}],"relations":[{"id":"R366","pred":"themeOf","subj":"T674","obj":"T679"},{"id":"R369","pred":"themeOf","subj":"T679","obj":"T680"}],"text":"ion, such as cleaved caspase-3, cleaved PARP, and Bax, was elevated, whereas the survival protein expression levels, such as Bcl-2, C-IAP1, was decreased in the melanoma tissues of CCR5−/− mice. "}