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PMC:3342329 / 956-1151 JSONTXT

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test3

Id Subject Object Predicate Lexical cue
T103 181-185 Protein denotes CCR5
T102 144-153 Negative_regulation denotes decreased
T101 132-138 Protein denotes C-IAP1
T73 181-185 Protein denotes CCR5
T72 132-138 Protein denotes C-IAP1

testone

Id Subject Object Predicate Lexical cue
T37 181-185 Protein denotes CCR5
T36 132-138 Protein denotes C-IAP1
T55 144-153 Negative_regulation denotes decreased
T54 98-108 Gene_expression denotes expression
T53 13-20 Phosphorylation denotes cleaved
R7 T36 T55 themeOf C-IAP1,decreased
R8 T36 T54 themeOf C-IAP1,expression
R13 T54 T55 themeOf expression,decreased

BioNLP16_Messiy

Id Subject Object Predicate Lexical cue
T643 144-153 Negative_regulation denotes decreased
T642 98-108 Gene_expression denotes expression
T629 181-185 Protein denotes CCR5
T628 132-138 Protein denotes C-IAP1
R344 T628 T642 themeOf C-IAP1,expression
R345 T628 T643 themeOf C-IAP1,decreased

BioNLP16_DUT

Id Subject Object Predicate Lexical cue
T769 98-108 Gene_expression denotes expression
T768 144-153 Negative_regulation denotes decreased
T755 181-185 Protein denotes CCR5
T754 132-138 Protein denotes C-IAP1
R413 T754 T769 themeOf C-IAP1,expression
R414 T754 T768 themeOf C-IAP1,decreased
R418 T769 T768 themeOf expression,decreased

pmc-enju-pas

Id Subject Object Predicate Lexical cue
T443 189-193 NN denotes mice
T442 181-188 NN denotes CCR5−/−
T441 178-180 IN denotes of
T440 170-177 NN denotes tissues
T439 161-169 NN denotes melanoma
T438 157-160 DT denotes the
T437 154-156 IN denotes in
T436 144-153 VB denotes decreased
T435 140-143 VB denotes was
T434 138-139 -COMMA- denotes ,
T433 132-138 NN denotes C-IAP1
T432 130-131 -COMMA- denotes ,
T431 125-130 NN denotes Bcl-2
T430 122-124 IN denotes as
T429 117-121 JJ denotes such
T428 115-116 -COMMA- denotes ,
T427 109-115 NN denotes levels
T426 98-108 NN denotes expression
T425 90-97 NN denotes protein
T424 81-89 NN denotes survival
T423 77-80 DT denotes the
T422 69-76 IN denotes whereas
T421 67-68 -COMMA- denotes ,
T420 59-67 VB denotes elevated
T419 55-58 VB denotes was
T418 53-54 -COMMA- denotes ,
T417 50-53 NN denotes Bax
T416 46-49 CC denotes and
T415 44-45 -COMMA- denotes ,
T414 40-44 NN denotes PARP
T413 32-39 VB denotes cleaved
T412 30-31 -COMMA- denotes ,
T411 21-30 NN denotes caspase-3
T410 13-20 VB denotes cleaved
T409 10-12 IN denotes as
T408 5-9 JJ denotes such
T407 3-4 -COMMA- denotes ,
R191 T409 T408 arg1Of as,such
R192 T411 T410 arg2Of caspase-3,cleaved
R193 T411 T413 arg2Of caspase-3,cleaved
R194 T411 T416 arg1Of caspase-3,and
R195 T413 T412 arg1Of cleaved,","
R196 T414 T413 arg3Of PARP,cleaved
R197 T416 T409 arg2Of and,as
R198 T416 T415 arg1Of and,","
R199 T417 T416 arg2Of Bax,and
R200 T420 T418 arg1Of elevated,","
R201 T420 T419 arg2Of elevated,was
R202 T420 T421 arg1Of elevated,","
R203 T420 T422 arg1Of elevated,whereas
R204 T427 T423 arg1Of levels,the
R205 T427 T424 arg1Of levels,survival
R206 T427 T425 arg1Of levels,protein
R207 T427 T426 arg1Of levels,expression
R208 T427 T428 arg1Of levels,","
R209 T427 T430 arg1Of levels,as
R210 T427 T435 arg1Of levels,was
R211 T427 T436 arg2Of levels,decreased
R212 T430 T429 arg1Of as,such
R213 T431 T430 arg2Of Bcl-2,as
R214 T431 T432 arg1Of Bcl-2,","
R215 T433 T432 arg2Of C-IAP1,","
R216 T436 T422 arg2Of decreased,whereas
R217 T436 T434 arg1Of decreased,","
R218 T436 T435 arg2Of decreased,was
R219 T436 T437 arg1Of decreased,in
R220 T440 T437 arg2Of tissues,in
R221 T440 T438 arg1Of tissues,the
R222 T440 T439 arg1Of tissues,melanoma
R223 T440 T441 arg1Of tissues,of
R224 T443 T441 arg2Of mice,of
R225 T443 T442 arg1Of mice,CCR5−/−

bionlp-st-ge-2016-test-proteins

Id Subject Object Predicate Lexical cue
T179 181-185 Protein denotes CCR5
T178 132-138 Protein denotes C-IAP1

bionlp-st-ge-2016-uniprot

Id Subject Object Predicate Lexical cue
T552 132-138 http://www.uniprot.org/uniprot/Q13490 denotes C-IAP1
T551 21-30 http://www.uniprot.org/uniprot/P42574 denotes caspase-3
T542 181-185 http://www.uniprot.org/uniprot/P51681 denotes CCR5

UBERON-AE

Id Subject Object Predicate Lexical cue
T115 170-177 http://purl.obolibrary.org/obo/UBERON_0000479 denotes tissues

simple1

Id Subject Object Predicate Lexical cue
T252 181-185 Protein denotes CCR5
T251 132-138 Protein denotes C-IAP1

DLUT931

Id Subject Object Predicate Lexical cue
T583 144-153 Negative_regulation denotes decreased
T582 98-108 Gene_expression denotes expression
T569 181-185 Protein denotes CCR5
T568 132-138 Protein denotes C-IAP1
R320 T568 T582 themeOf C-IAP1,expression
R326 T582 T583 themeOf expression,decreased

bionlp-st-ge-2016-test-ihmc

Id Subject Object Predicate Lexical cue
T819 13-45 Protein_catabolism denotes cleaved caspase-3, cleaved PARP,
T816 90-108 Gene_expression denotes protein expression
T813 90-97 Protein denotes protein
T812 189-193 Protein denotes mice
T811 125-130 Protein denotes Bcl-2
T806 132-139 Protein denotes C-IAP1,
T805 40-44 Protein denotes PARP
T799 50-53 Protein denotes Bax
T795 13-45 Protein denotes cleaved caspase-3, cleaved PARP,
R421 T795 T819 themeOf "cleaved caspase-3, cleaved PARP,","cleaved caspase-3, cleaved PARP,"
R424 T813 T816 themeOf protein,protein expression

bionlp-st-ge-2016-spacy-parsed

Id Subject Object Predicate Lexical cue
T1031 193-194 . denotes .
T1030 189-193 NNS denotes mice
T1029 187-188 NN denotes −
T1028 186-187 NN denotes /
T1027 185-186 CD denotes −
T1026 181-185 CD denotes CCR5
T1025 178-180 IN denotes of
T1024 170-177 NNS denotes tissues
T1023 161-169 NN denotes melanoma
T1022 157-160 DT denotes the
T1021 154-156 IN denotes in
T1020 144-153 VBN denotes decreased
T1019 140-143 VBD denotes was
T1018 138-139 , denotes ,
T1017 132-138 NNP denotes C-IAP1
T1016 130-131 , denotes ,
T1015 125-130 NN denotes Bcl-2
T1014 122-124 IN denotes as
T1013 117-121 JJ denotes such
T1012 115-116 , denotes ,
T1011 109-115 NNS denotes levels
T1010 98-108 NN denotes expression
T1009 90-97 NN denotes protein
T1008 81-89 NN denotes survival
T1007 77-80 DT denotes the
T1006 69-76 IN denotes whereas
T1005 67-68 , denotes ,
T1004 59-67 VBN denotes elevated
T1003 55-58 VBD denotes was
T1002 53-54 , denotes ,
T1001 50-53 NNP denotes Bax
T1000 46-49 CC denotes and
T999 44-45 , denotes ,
T998 40-44 NNP denotes PARP
T997 32-39 JJ denotes cleaved
T996 30-31 , denotes ,
T995 21-30 JJ denotes caspase-3
T994 13-20 JJ denotes cleaved
T993 10-12 IN denotes as
T992 5-9 JJ denotes such
T991 3-4 , denotes ,
R597 T992 T993 amod such,as
R599 T994 T1004 nsubjpass cleaved,elevated
R600 T995 T1004 nsubjpass caspase-3,elevated
R601 T996 T998 punct ",",PARP
R602 T997 T998 compound cleaved,PARP
R603 T998 T995 appos PARP,caspase-3
R604 T999 T998 punct ",",PARP
R605 T1000 T998 cc and,PARP
R606 T1001 T998 conj Bax,PARP
R607 T1002 T1004 punct ",",elevated
R608 T1003 T1004 auxpass was,elevated
R609 T1004 T1004 ROOT elevated,elevated
R610 T1005 T1004 punct ",",elevated
R611 T1006 T1020 mark whereas,decreased
R612 T1007 T1011 det the,levels
R613 T1008 T1009 compound survival,protein
R614 T1009 T1011 compound protein,levels
R615 T1010 T1011 compound expression,levels
R616 T1011 T1020 nsubjpass levels,decreased
R617 T1012 T1011 punct ",",levels
R618 T1013 T1014 amod such,as
R619 T1014 T1011 prep as,levels
R620 T1015 T1014 pobj Bcl-2,as
R621 T1016 T1015 punct ",",Bcl-2
R622 T1017 T1015 conj C-IAP1,Bcl-2
R623 T1018 T1020 punct ",",decreased
R624 T1019 T1020 auxpass was,decreased
R625 T1020 T1004 advcl decreased,elevated
R626 T1021 T1020 prep in,decreased
R627 T1022 T1024 det the,tissues
R629 T1023 T1024 compound melanoma,tissues
R630 T1024 T1021 pobj tissues,in
R631 T1025 T1024 prep of,tissues
R632 T1026 T1030 nummod CCR5,mice
R633 T1027 T1030 nummod −,mice
R634 T1028 T1030 nmod /,mice
R635 T1029 T1030 compound −,mice
R636 T1030 T1025 pobj mice,of
R637 T1031 T1004 punct .,elevated

bionlp-st-ge-2016-test-tees

Id Subject Object Predicate Lexical cue
T680 144-153 Negative_regulation denotes decreased
T679 98-108 Gene_expression denotes expression
T678 59-67 Positive_regulation denotes elevated
T677 59-67 Positive_regulation denotes elevated
T674 125-138 Protein denotes Bcl-2, C-IAP1
T673 50-53 Protein denotes Bax
T672 40-44 Protein denotes PARP
R366 T674 T679 themeOf "Bcl-2, C-IAP1",expression
R369 T679 T680 themeOf expression,decreased