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PMC:3342329 / 834-1053 JSONTXT

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test3

Id Subject Object Predicate Lexical cue
T99 25-29 Protein denotes CCR5
T100 70-74 Protein denotes CCR5
T71 70-74 Protein denotes CCR5
T70 25-29 Protein denotes CCR5

testone

Id Subject Object Predicate Lexical cue
T35 70-74 Protein denotes CCR5
T34 25-29 Protein denotes CCR5
T53 135-142 Phosphorylation denotes cleaved

BioNLP16_Messiy

Id Subject Object Predicate Lexical cue
T627 70-74 Protein denotes CCR5
T626 25-29 Protein denotes CCR5

BioNLP16_DUT

Id Subject Object Predicate Lexical cue
T753 70-74 Protein denotes CCR5
T752 25-29 Protein denotes CCR5

pmc-enju-pas

Id Subject Object Predicate Lexical cue
T425 212-219 NN denotes protein
T424 203-211 NN denotes survival
T423 199-202 DT denotes the
T422 191-198 IN denotes whereas
T421 189-190 -COMMA- denotes ,
T420 181-189 VB denotes elevated
T419 177-180 VB denotes was
T418 175-176 -COMMA- denotes ,
T417 172-175 NN denotes Bax
T416 168-171 CC denotes and
T415 166-167 -COMMA- denotes ,
T414 162-166 NN denotes PARP
T413 154-161 VB denotes cleaved
T412 152-153 -COMMA- denotes ,
T411 143-152 NN denotes caspase-3
T410 135-142 VB denotes cleaved
T409 132-134 IN denotes as
T408 127-131 JJ denotes such
T407 125-126 -COMMA- denotes ,
T406 115-125 NN denotes expression
T405 107-114 NN denotes protein
T404 97-106 JJ denotes apoptotic
T403 90-96 NN denotes target
T402 84-89 NN denotes NF-κB
T401 78-82 NN denotes mice
T400 70-77 JJ denotes CCR5+/+
T399 67-69 IN denotes of
T398 59-66 NN denotes tissues
T397 50-58 NN denotes melanoma
T396 47-49 TO denotes to
T395 38-46 VB denotes compared
T394 33-37 NN denotes mice
T393 25-32 NN denotes CCR5−/−
T392 22-24 IN denotes of
T391 14-21 NN denotes tissues
T390 5-13 NN denotes melanoma
T389 1-4 DT denotes the
R172 T391 T389 arg1Of tissues,the
R173 T391 T390 arg1Of tissues,melanoma
R174 T391 T392 arg1Of tissues,of
R175 T394 T392 arg2Of mice,of
R176 T394 T393 arg1Of mice,CCR5−/−
R177 T396 T395 arg2Of to,compared
R178 T398 T396 arg2Of tissues,to
R179 T398 T397 arg1Of tissues,melanoma
R180 T398 T399 arg1Of tissues,of
R181 T401 T399 arg2Of mice,of
R182 T401 T400 arg1Of mice,CCR5+/+
R183 T406 T402 arg1Of expression,NF-κB
R184 T406 T403 arg1Of expression,target
R185 T406 T404 arg1Of expression,apoptotic
R186 T406 T405 arg1Of expression,protein
R187 T406 T407 arg1Of expression,","
R188 T406 T409 arg1Of expression,as
R189 T406 T419 arg1Of expression,was
R190 T406 T420 arg2Of expression,elevated
R191 T409 T408 arg1Of as,such
R192 T411 T410 arg2Of caspase-3,cleaved
R193 T411 T413 arg2Of caspase-3,cleaved
R194 T411 T416 arg1Of caspase-3,and
R195 T413 T412 arg1Of cleaved,","
R196 T414 T413 arg3Of PARP,cleaved
R197 T416 T409 arg2Of and,as
R198 T416 T415 arg1Of and,","
R199 T417 T416 arg2Of Bax,and
R200 T420 T418 arg1Of elevated,","
R201 T420 T419 arg2Of elevated,was
R202 T420 T421 arg1Of elevated,","
R203 T420 T422 arg1Of elevated,whereas

bionlp-st-ge-2016-test-proteins

Id Subject Object Predicate Lexical cue
T177 70-74 Protein denotes CCR5
T176 25-29 Protein denotes CCR5

bionlp-st-ge-2016-uniprot

Id Subject Object Predicate Lexical cue
T551 143-152 http://www.uniprot.org/uniprot/P42574 denotes caspase-3
T541 70-74 http://www.uniprot.org/uniprot/P51681 denotes CCR5
T540 25-29 http://www.uniprot.org/uniprot/P51681 denotes CCR5

UBERON-AE

Id Subject Object Predicate Lexical cue
T114 59-66 http://purl.obolibrary.org/obo/UBERON_0000479 denotes tissues
T113 14-21 http://purl.obolibrary.org/obo/UBERON_0000479 denotes tissues

simple1

Id Subject Object Predicate Lexical cue
T250 70-74 Protein denotes CCR5
T249 25-29 Protein denotes CCR5

DLUT931

Id Subject Object Predicate Lexical cue
T567 70-74 Protein denotes CCR5
T566 25-29 Protein denotes CCR5

bionlp-st-ge-2016-test-ihmc

Id Subject Object Predicate Lexical cue
T819 135-167 Protein_catabolism denotes cleaved caspase-3, cleaved PARP,
T813 212-219 Protein denotes protein
T810 84-89 Protein denotes NF-κB
T808 78-82 Protein denotes mice
T805 162-166 Protein denotes PARP
T801 33-37 Protein denotes mice
T799 172-175 Protein denotes Bax
T795 135-167 Protein denotes cleaved caspase-3, cleaved PARP,
T782 107-114 Protein denotes protein
R421 T795 T819 themeOf "cleaved caspase-3, cleaved PARP,","cleaved caspase-3, cleaved PARP,"

bionlp-st-ge-2016-spacy-parsed

Id Subject Object Predicate Lexical cue
T1009 212-219 NN denotes protein
T1008 203-211 NN denotes survival
T1007 199-202 DT denotes the
T1006 191-198 IN denotes whereas
T1005 189-190 , denotes ,
T1004 181-189 VBN denotes elevated
T1003 177-180 VBD denotes was
T1002 175-176 , denotes ,
T1001 172-175 NNP denotes Bax
T1000 168-171 CC denotes and
T999 166-167 , denotes ,
T998 162-166 NNP denotes PARP
T997 154-161 JJ denotes cleaved
T996 152-153 , denotes ,
T995 143-152 JJ denotes caspase-3
T994 135-142 JJ denotes cleaved
T993 132-134 IN denotes as
T992 127-131 JJ denotes such
T991 125-126 , denotes ,
T990 115-125 NN denotes expression
T989 107-114 NN denotes protein
T988 97-106 JJ denotes apoptotic
T987 90-96 NN denotes target
T986 84-89 JJ denotes NF-κB
T985 82-83 . denotes .
T984 78-82 NNS denotes mice
T983 76-77 NN denotes +
T982 75-76 NN denotes /
T981 74-75 CD denotes +
T980 70-74 CD denotes CCR5
T979 67-69 IN denotes of
T978 59-66 NNS denotes tissues
T977 50-58 VB denotes melanoma
T976 47-49 TO denotes to
T975 38-46 VBN denotes compared
T974 33-37 NNS denotes mice
T973 31-32 NN denotes −
T972 30-31 NN denotes /
T971 29-30 CD denotes −
T970 25-29 CD denotes CCR5
T969 22-24 IN denotes of
T968 14-21 NNS denotes tissues
T967 5-13 NN denotes melanoma
T966 1-4 DT denotes the
R571 T966 T968 det the,tissues
R572 T967 T968 compound melanoma,tissues
R574 T969 T968 prep of,tissues
R575 T970 T974 nummod CCR5,mice
R576 T971 T974 nummod −,mice
R577 T972 T974 compound /,mice
R578 T973 T974 compound −,mice
R579 T974 T969 pobj mice,of
R581 T976 T975 prep to,compared
R582 T977 T978 compound melanoma,tissues
R583 T978 T976 pobj tissues,to
R584 T979 T978 prep of,tissues
R585 T980 T984 nummod CCR5,mice
R586 T981 T984 nummod +,mice
R587 T982 T984 amod /,mice
R588 T983 T984 amod +,mice
R589 T984 T979 pobj mice,of
R591 T986 T987 amod NF-κB,target
R592 T987 T1004 nsubjpass target,elevated
R593 T988 T990 amod apoptotic,expression
R594 T989 T990 compound protein,expression
R595 T990 T987 appos expression,target
R596 T991 T987 punct ",",target
R597 T992 T993 amod such,as
R598 T993 T987 prep as,target
R599 T994 T1004 nsubjpass cleaved,elevated
R600 T995 T1004 nsubjpass caspase-3,elevated
R601 T996 T998 punct ",",PARP
R602 T997 T998 compound cleaved,PARP
R603 T998 T995 appos PARP,caspase-3
R604 T999 T998 punct ",",PARP
R605 T1000 T998 cc and,PARP
R606 T1001 T998 conj Bax,PARP
R607 T1002 T1004 punct ",",elevated
R608 T1003 T1004 auxpass was,elevated
R609 T1004 T1004 ROOT elevated,elevated
R610 T1005 T1004 punct ",",elevated
R613 T1008 T1009 compound survival,protein

bionlp-st-ge-2016-test-tees

Id Subject Object Predicate Lexical cue
T678 181-189 Positive_regulation denotes elevated
T677 181-189 Positive_regulation denotes elevated
T676 115-125 Gene_expression denotes expression
T675 115-125 Gene_expression denotes expression
T673 172-175 Protein denotes Bax
T672 162-166 Protein denotes PARP
T671 84-89 Protein denotes NF-κB
R364 T671 T675 themeOf NF-κB,expression
R365 T673 T676 themeOf Bax,expression
R367 T675 T677 themeOf expression,elevated
R368 T676 T678 themeOf expression,elevated