PMC:3342329 / 834-1053 JSONTXT

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    test3

    {"project":"test3","denotations":[{"id":"T99","span":{"begin":25,"end":29},"obj":"Protein"},{"id":"T100","span":{"begin":70,"end":74},"obj":"Protein"},{"id":"T71","span":{"begin":70,"end":74},"obj":"Protein"},{"id":"T70","span":{"begin":25,"end":29},"obj":"Protein"}],"text":" the melanoma tissues of CCR5−/− mice compared to melanoma tissues of CCR5+/+ mice. NF-κB target apoptotic protein expression, such as cleaved caspase-3, cleaved PARP, and Bax, was elevated, whereas the survival protein"}

    testone

    {"project":"testone","denotations":[{"id":"T35","span":{"begin":70,"end":74},"obj":"Protein"},{"id":"T34","span":{"begin":25,"end":29},"obj":"Protein"},{"id":"T53","span":{"begin":135,"end":142},"obj":"Phosphorylation"}],"text":" the melanoma tissues of CCR5−/− mice compared to melanoma tissues of CCR5+/+ mice. NF-κB target apoptotic protein expression, such as cleaved caspase-3, cleaved PARP, and Bax, was elevated, whereas the survival protein"}

    BioNLP16_Messiy

    {"project":"BioNLP16_Messiy","denotations":[{"id":"T627","span":{"begin":70,"end":74},"obj":"Protein"},{"id":"T626","span":{"begin":25,"end":29},"obj":"Protein"}],"text":" the melanoma tissues of CCR5−/− mice compared to melanoma tissues of CCR5+/+ mice. NF-κB target apoptotic protein expression, such as cleaved caspase-3, cleaved PARP, and Bax, was elevated, whereas the survival protein"}

    BioNLP16_DUT

    {"project":"BioNLP16_DUT","denotations":[{"id":"T753","span":{"begin":70,"end":74},"obj":"Protein"},{"id":"T752","span":{"begin":25,"end":29},"obj":"Protein"}],"text":" the melanoma tissues of CCR5−/− mice compared to melanoma tissues of CCR5+/+ mice. NF-κB target apoptotic protein expression, such as cleaved caspase-3, cleaved PARP, and Bax, was elevated, whereas the survival protein"}

    pmc-enju-pas

    {"project":"pmc-enju-pas","denotations":[{"id":"T425","span":{"begin":212,"end":219},"obj":"NN"},{"id":"T424","span":{"begin":203,"end":211},"obj":"NN"},{"id":"T423","span":{"begin":199,"end":202},"obj":"DT"},{"id":"T422","span":{"begin":191,"end":198},"obj":"IN"},{"id":"T421","span":{"begin":189,"end":190},"obj":"-COMMA-"},{"id":"T420","span":{"begin":181,"end":189},"obj":"VB"},{"id":"T419","span":{"begin":177,"end":180},"obj":"VB"},{"id":"T418","span":{"begin":175,"end":176},"obj":"-COMMA-"},{"id":"T417","span":{"begin":172,"end":175},"obj":"NN"},{"id":"T416","span":{"begin":168,"end":171},"obj":"CC"},{"id":"T415","span":{"begin":166,"end":167},"obj":"-COMMA-"},{"id":"T414","span":{"begin":162,"end":166},"obj":"NN"},{"id":"T413","span":{"begin":154,"end":161},"obj":"VB"},{"id":"T412","span":{"begin":152,"end":153},"obj":"-COMMA-"},{"id":"T411","span":{"begin":143,"end":152},"obj":"NN"},{"id":"T410","span":{"begin":135,"end":142},"obj":"VB"},{"id":"T409","span":{"begin":132,"end":134},"obj":"IN"},{"id":"T408","span":{"begin":127,"end":131},"obj":"JJ"},{"id":"T407","span":{"begin":125,"end":126},"obj":"-COMMA-"},{"id":"T406","span":{"begin":115,"end":125},"obj":"NN"},{"id":"T405","span":{"begin":107,"end":114},"obj":"NN"},{"id":"T404","span":{"begin":97,"end":106},"obj":"JJ"},{"id":"T403","span":{"begin":90,"end":96},"obj":"NN"},{"id":"T402","span":{"begin":84,"end":89},"obj":"NN"},{"id":"T401","span":{"begin":78,"end":82},"obj":"NN"},{"id":"T400","span":{"begin":70,"end":77},"obj":"JJ"},{"id":"T399","span":{"begin":67,"end":69},"obj":"IN"},{"id":"T398","span":{"begin":59,"end":66},"obj":"NN"},{"id":"T397","span":{"begin":50,"end":58},"obj":"NN"},{"id":"T396","span":{"begin":47,"end":49},"obj":"TO"},{"id":"T395","span":{"begin":38,"end":46},"obj":"VB"},{"id":"T394","span":{"begin":33,"end":37},"obj":"NN"},{"id":"T393","span":{"begin":25,"end":32},"obj":"NN"},{"id":"T392","span":{"begin":22,"end":24},"obj":"IN"},{"id":"T391","span":{"begin":14,"end":21},"obj":"NN"},{"id":"T390","span":{"begin":5,"end":13},"obj":"NN"},{"id":"T389","span":{"begin":1,"end":4},"obj":"DT"}],"relations":[{"id":"R172","pred":"arg1Of","subj":"T391","obj":"T389"},{"id":"R173","pred":"arg1Of","subj":"T391","obj":"T390"},{"id":"R174","pred":"arg1Of","subj":"T391","obj":"T392"},{"id":"R175","pred":"arg2Of","subj":"T394","obj":"T392"},{"id":"R176","pred":"arg1Of","subj":"T394","obj":"T393"},{"id":"R177","pred":"arg2Of","subj":"T396","obj":"T395"},{"id":"R178","pred":"arg2Of","subj":"T398","obj":"T396"},{"id":"R179","pred":"arg1Of","subj":"T398","obj":"T397"},{"id":"R180","pred":"arg1Of","subj":"T398","obj":"T399"},{"id":"R181","pred":"arg2Of","subj":"T401","obj":"T399"},{"id":"R182","pred":"arg1Of","subj":"T401","obj":"T400"},{"id":"R183","pred":"arg1Of","subj":"T406","obj":"T402"},{"id":"R184","pred":"arg1Of","subj":"T406","obj":"T403"},{"id":"R185","pred":"arg1Of","subj":"T406","obj":"T404"},{"id":"R186","pred":"arg1Of","subj":"T406","obj":"T405"},{"id":"R187","pred":"arg1Of","subj":"T406","obj":"T407"},{"id":"R188","pred":"arg1Of","subj":"T406","obj":"T409"},{"id":"R189","pred":"arg1Of","subj":"T406","obj":"T419"},{"id":"R190","pred":"arg2Of","subj":"T406","obj":"T420"},{"id":"R191","pred":"arg1Of","subj":"T409","obj":"T408"},{"id":"R192","pred":"arg2Of","subj":"T411","obj":"T410"},{"id":"R193","pred":"arg2Of","subj":"T411","obj":"T413"},{"id":"R194","pred":"arg1Of","subj":"T411","obj":"T416"},{"id":"R195","pred":"arg1Of","subj":"T413","obj":"T412"},{"id":"R196","pred":"arg3Of","subj":"T414","obj":"T413"},{"id":"R197","pred":"arg2Of","subj":"T416","obj":"T409"},{"id":"R198","pred":"arg1Of","subj":"T416","obj":"T415"},{"id":"R199","pred":"arg2Of","subj":"T417","obj":"T416"},{"id":"R200","pred":"arg1Of","subj":"T420","obj":"T418"},{"id":"R201","pred":"arg2Of","subj":"T420","obj":"T419"},{"id":"R202","pred":"arg1Of","subj":"T420","obj":"T421"},{"id":"R203","pred":"arg1Of","subj":"T420","obj":"T422"}],"namespaces":[{"prefix":"_base","uri":"http://kmcs.nii.ac.jp/enju/"}],"text":" the melanoma tissues of CCR5−/− mice compared to melanoma tissues of CCR5+/+ mice. NF-κB target apoptotic protein expression, such as cleaved caspase-3, cleaved PARP, and Bax, was elevated, whereas the survival protein"}

    bionlp-st-ge-2016-test-proteins

    {"project":"bionlp-st-ge-2016-test-proteins","denotations":[{"id":"T177","span":{"begin":70,"end":74},"obj":"Protein"},{"id":"T176","span":{"begin":25,"end":29},"obj":"Protein"}],"namespaces":[{"prefix":"_base","uri":"http://bionlp.dbcls.jp/ontology/ge.owl#"}],"text":" the melanoma tissues of CCR5−/− mice compared to melanoma tissues of CCR5+/+ mice. NF-κB target apoptotic protein expression, such as cleaved caspase-3, cleaved PARP, and Bax, was elevated, whereas the survival protein"}

    bionlp-st-ge-2016-uniprot

    {"project":"bionlp-st-ge-2016-uniprot","denotations":[{"id":"T551","span":{"begin":143,"end":152},"obj":"http://www.uniprot.org/uniprot/P42574"},{"id":"T541","span":{"begin":70,"end":74},"obj":"http://www.uniprot.org/uniprot/P51681"},{"id":"T540","span":{"begin":25,"end":29},"obj":"http://www.uniprot.org/uniprot/P51681"}],"namespaces":[{"prefix":"_base","uri":"http://www.uniprot.org/uniprot/"}],"text":" the melanoma tissues of CCR5−/− mice compared to melanoma tissues of CCR5+/+ mice. NF-κB target apoptotic protein expression, such as cleaved caspase-3, cleaved PARP, and Bax, was elevated, whereas the survival protein"}

    UBERON-AE

    {"project":"UBERON-AE","denotations":[{"id":"T114","span":{"begin":59,"end":66},"obj":"http://purl.obolibrary.org/obo/UBERON_0000479"},{"id":"T113","span":{"begin":14,"end":21},"obj":"http://purl.obolibrary.org/obo/UBERON_0000479"}],"text":" the melanoma tissues of CCR5−/− mice compared to melanoma tissues of CCR5+/+ mice. NF-κB target apoptotic protein expression, such as cleaved caspase-3, cleaved PARP, and Bax, was elevated, whereas the survival protein"}

    simple1

    {"project":"simple1","denotations":[{"id":"T250","span":{"begin":70,"end":74},"obj":"Protein"},{"id":"T249","span":{"begin":25,"end":29},"obj":"Protein"}],"text":" the melanoma tissues of CCR5−/− mice compared to melanoma tissues of CCR5+/+ mice. NF-κB target apoptotic protein expression, such as cleaved caspase-3, cleaved PARP, and Bax, was elevated, whereas the survival protein"}

    DLUT931

    {"project":"DLUT931","denotations":[{"id":"T567","span":{"begin":70,"end":74},"obj":"Protein"},{"id":"T566","span":{"begin":25,"end":29},"obj":"Protein"}],"text":" the melanoma tissues of CCR5−/− mice compared to melanoma tissues of CCR5+/+ mice. NF-κB target apoptotic protein expression, such as cleaved caspase-3, cleaved PARP, and Bax, was elevated, whereas the survival protein"}

    bionlp-st-ge-2016-test-ihmc

    {"project":"bionlp-st-ge-2016-test-ihmc","denotations":[{"id":"T819","span":{"begin":135,"end":167},"obj":"Protein_catabolism"},{"id":"T813","span":{"begin":212,"end":219},"obj":"Protein"},{"id":"T810","span":{"begin":84,"end":89},"obj":"Protein"},{"id":"T808","span":{"begin":78,"end":82},"obj":"Protein"},{"id":"T805","span":{"begin":162,"end":166},"obj":"Protein"},{"id":"T801","span":{"begin":33,"end":37},"obj":"Protein"},{"id":"T799","span":{"begin":172,"end":175},"obj":"Protein"},{"id":"T795","span":{"begin":135,"end":167},"obj":"Protein"},{"id":"T782","span":{"begin":107,"end":114},"obj":"Protein"}],"relations":[{"id":"R421","pred":"themeOf","subj":"T795","obj":"T819"}],"text":" the melanoma tissues of CCR5−/− mice compared to melanoma tissues of CCR5+/+ mice. NF-κB target apoptotic protein expression, such as cleaved caspase-3, cleaved PARP, and Bax, was elevated, whereas the survival protein"}

    bionlp-st-ge-2016-spacy-parsed

    {"project":"bionlp-st-ge-2016-spacy-parsed","denotations":[{"id":"T1009","span":{"begin":212,"end":219},"obj":"NN"},{"id":"T1008","span":{"begin":203,"end":211},"obj":"NN"},{"id":"T1007","span":{"begin":199,"end":202},"obj":"DT"},{"id":"T1006","span":{"begin":191,"end":198},"obj":"IN"},{"id":"T1005","span":{"begin":189,"end":190},"obj":","},{"id":"T1004","span":{"begin":181,"end":189},"obj":"VBN"},{"id":"T1003","span":{"begin":177,"end":180},"obj":"VBD"},{"id":"T1002","span":{"begin":175,"end":176},"obj":","},{"id":"T1001","span":{"begin":172,"end":175},"obj":"NNP"},{"id":"T1000","span":{"begin":168,"end":171},"obj":"CC"},{"id":"T999","span":{"begin":166,"end":167},"obj":","},{"id":"T998","span":{"begin":162,"end":166},"obj":"NNP"},{"id":"T997","span":{"begin":154,"end":161},"obj":"JJ"},{"id":"T996","span":{"begin":152,"end":153},"obj":","},{"id":"T995","span":{"begin":143,"end":152},"obj":"JJ"},{"id":"T994","span":{"begin":135,"end":142},"obj":"JJ"},{"id":"T993","span":{"begin":132,"end":134},"obj":"IN"},{"id":"T992","span":{"begin":127,"end":131},"obj":"JJ"},{"id":"T991","span":{"begin":125,"end":126},"obj":","},{"id":"T990","span":{"begin":115,"end":125},"obj":"NN"},{"id":"T989","span":{"begin":107,"end":114},"obj":"NN"},{"id":"T988","span":{"begin":97,"end":106},"obj":"JJ"},{"id":"T987","span":{"begin":90,"end":96},"obj":"NN"},{"id":"T986","span":{"begin":84,"end":89},"obj":"JJ"},{"id":"T985","span":{"begin":82,"end":83},"obj":"."},{"id":"T984","span":{"begin":78,"end":82},"obj":"NNS"},{"id":"T983","span":{"begin":76,"end":77},"obj":"NN"},{"id":"T982","span":{"begin":75,"end":76},"obj":"NN"},{"id":"T981","span":{"begin":74,"end":75},"obj":"CD"},{"id":"T980","span":{"begin":70,"end":74},"obj":"CD"},{"id":"T979","span":{"begin":67,"end":69},"obj":"IN"},{"id":"T978","span":{"begin":59,"end":66},"obj":"NNS"},{"id":"T977","span":{"begin":50,"end":58},"obj":"VB"},{"id":"T976","span":{"begin":47,"end":49},"obj":"TO"},{"id":"T975","span":{"begin":38,"end":46},"obj":"VBN"},{"id":"T974","span":{"begin":33,"end":37},"obj":"NNS"},{"id":"T973","span":{"begin":31,"end":32},"obj":"NN"},{"id":"T972","span":{"begin":30,"end":31},"obj":"NN"},{"id":"T971","span":{"begin":29,"end":30},"obj":"CD"},{"id":"T970","span":{"begin":25,"end":29},"obj":"CD"},{"id":"T969","span":{"begin":22,"end":24},"obj":"IN"},{"id":"T968","span":{"begin":14,"end":21},"obj":"NNS"},{"id":"T967","span":{"begin":5,"end":13},"obj":"NN"},{"id":"T966","span":{"begin":1,"end":4},"obj":"DT"}],"relations":[{"id":"R571","pred":"det","subj":"T966","obj":"T968"},{"id":"R572","pred":"compound","subj":"T967","obj":"T968"},{"id":"R574","pred":"prep","subj":"T969","obj":"T968"},{"id":"R575","pred":"nummod","subj":"T970","obj":"T974"},{"id":"R576","pred":"nummod","subj":"T971","obj":"T974"},{"id":"R577","pred":"compound","subj":"T972","obj":"T974"},{"id":"R578","pred":"compound","subj":"T973","obj":"T974"},{"id":"R579","pred":"pobj","subj":"T974","obj":"T969"},{"id":"R581","pred":"prep","subj":"T976","obj":"T975"},{"id":"R582","pred":"compound","subj":"T977","obj":"T978"},{"id":"R583","pred":"pobj","subj":"T978","obj":"T976"},{"id":"R584","pred":"prep","subj":"T979","obj":"T978"},{"id":"R585","pred":"nummod","subj":"T980","obj":"T984"},{"id":"R586","pred":"nummod","subj":"T981","obj":"T984"},{"id":"R587","pred":"amod","subj":"T982","obj":"T984"},{"id":"R588","pred":"amod","subj":"T983","obj":"T984"},{"id":"R589","pred":"pobj","subj":"T984","obj":"T979"},{"id":"R591","pred":"amod","subj":"T986","obj":"T987"},{"id":"R592","pred":"nsubjpass","subj":"T987","obj":"T1004"},{"id":"R593","pred":"amod","subj":"T988","obj":"T990"},{"id":"R594","pred":"compound","subj":"T989","obj":"T990"},{"id":"R595","pred":"appos","subj":"T990","obj":"T987"},{"id":"R596","pred":"punct","subj":"T991","obj":"T987"},{"id":"R597","pred":"amod","subj":"T992","obj":"T993"},{"id":"R598","pred":"prep","subj":"T993","obj":"T987"},{"id":"R599","pred":"nsubjpass","subj":"T994","obj":"T1004"},{"id":"R600","pred":"nsubjpass","subj":"T995","obj":"T1004"},{"id":"R601","pred":"punct","subj":"T996","obj":"T998"},{"id":"R602","pred":"compound","subj":"T997","obj":"T998"},{"id":"R603","pred":"appos","subj":"T998","obj":"T995"},{"id":"R604","pred":"punct","subj":"T999","obj":"T998"},{"id":"R605","pred":"cc","subj":"T1000","obj":"T998"},{"id":"R606","pred":"conj","subj":"T1001","obj":"T998"},{"id":"R607","pred":"punct","subj":"T1002","obj":"T1004"},{"id":"R608","pred":"auxpass","subj":"T1003","obj":"T1004"},{"id":"R609","pred":"ROOT","subj":"T1004","obj":"T1004"},{"id":"R610","pred":"punct","subj":"T1005","obj":"T1004"},{"id":"R613","pred":"compound","subj":"T1008","obj":"T1009"}],"text":" the melanoma tissues of CCR5−/− mice compared to melanoma tissues of CCR5+/+ mice. NF-κB target apoptotic protein expression, such as cleaved caspase-3, cleaved PARP, and Bax, was elevated, whereas the survival protein"}

    bionlp-st-ge-2016-test-tees

    {"project":"bionlp-st-ge-2016-test-tees","denotations":[{"id":"T678","span":{"begin":181,"end":189},"obj":"Positive_regulation"},{"id":"T677","span":{"begin":181,"end":189},"obj":"Positive_regulation"},{"id":"T676","span":{"begin":115,"end":125},"obj":"Gene_expression"},{"id":"T675","span":{"begin":115,"end":125},"obj":"Gene_expression"},{"id":"T673","span":{"begin":172,"end":175},"obj":"Protein"},{"id":"T672","span":{"begin":162,"end":166},"obj":"Protein"},{"id":"T671","span":{"begin":84,"end":89},"obj":"Protein"}],"relations":[{"id":"R364","pred":"themeOf","subj":"T671","obj":"T675"},{"id":"R365","pred":"themeOf","subj":"T673","obj":"T676"},{"id":"R367","pred":"themeOf","subj":"T675","obj":"T677"},{"id":"R368","pred":"themeOf","subj":"T676","obj":"T678"}],"text":" the melanoma tissues of CCR5−/− mice compared to melanoma tissues of CCR5+/+ mice. NF-κB target apoptotic protein expression, such as cleaved caspase-3, cleaved PARP, and Bax, was elevated, whereas the survival protein"}