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PMC:3320587 / 36244-36988 JSONTXT

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pmc-enju-pas

Id Subject Object Predicate Lexical cue
T12852 742-743 -RRB- denotes )
T12851 737-742 NN denotes 5B–5D
T12850 729-736 NN denotes Figures
T12849 728-729 -LRB- denotes (
T12848 725-727 CD denotes 12
T12847 721-724 NN denotes day
T12846 718-720 IN denotes at
T12845 706-717 JJ denotes significant
T12844 702-705 RB denotes not
T12843 698-701 VB denotes was
T12842 693-697 DT denotes this
T12841 691-692 -COMMA- denotes ,
T12840 681-691 VB denotes diminished
T12839 677-680 VB denotes was
T12838 675-676 -RRB- denotes )
T12837 670-675 NN denotes I-Mut
T12836 650-669 NN denotes HIV-1Lai/Bal-env-κB
T12835 649-650 -LRB- denotes (
T12834 641-648 NN denotes element
T12833 629-640 NN denotes NFAT5/NF-κB
T12832 622-628 JJ denotes shared
T12831 618-621 DT denotes the
T12830 615-617 IN denotes in
T12829 606-614 NN denotes mutation
T12828 601-605 NN denotes site
T12827 593-600 NN denotes binding
T12826 587-592 NN denotes NF-κB
T12825 578-586 JJ denotes proximal
T12824 576-577 -COMMA- denotes ,
T12823 570-576 JJ denotes single
T12822 566-569 DT denotes the
T12821 561-565 IN denotes with
T12820 555-560 NN denotes virus
T12819 548-554 JJ denotes mutant
T12818 544-547 DT denotes the
T12817 541-543 IN denotes of
T12816 529-540 NN denotes replication
T12815 520-528 IN denotes although
T12814 518-519 -COMMA- denotes ,
T12813 511-518 RB denotes Notably
T12812 508-509 -RRB- denotes )
T12811 506-508 NN denotes 5D
T12810 499-505 NN denotes Figure
T12809 498-499 -LRB- denotes (
T12808 492-497 NN denotes virus
T12807 482-491 JJ denotes wild-type
T12806 477-481 IN denotes with
T12805 471-476 NN denotes cells
T12804 468-470 IN denotes of
T12803 458-467 NN denotes infection
T12802 455-457 TO denotes to
T12801 446-454 VB denotes compared
T12800 443-445 IN denotes as
T12799 434-442 NN denotes I+II-Mut
T12798 414-433 NN denotes HIV-1Lai/Bal-env-κB
T12797 410-413 CC denotes and
T12796 403-409 NN denotes II-Mut
T12795 383-402 NN denotes HIV-1Lai/Bal-env-κB
T12794 378-382 IN denotes with
T12793 369-377 VB denotes infected
T12792 360-368 NN denotes cultures
T12791 357-359 IN denotes in
T12790 354-356 CD denotes 12
T12789 350-353 NN denotes day
T12788 347-349 IN denotes at
T12787 341-346 JJ denotes lower
T12786 327-340 RB denotes significantly
T12785 322-326 VB denotes were
T12784 315-321 NN denotes levels
T12783 311-314 NN denotes p24
T12782 309-310 -COMMA- denotes ,
T12781 301-309 RB denotes Moreover
T12780 298-299 -RRB- denotes )
T12779 296-298 NN denotes 5D
T12778 289-295 NN denotes Figure
T12777 288-289 -LRB- denotes (
T12776 286-287 -RRB- denotes )
T12775 282-286 CD denotes 0.01
T12774 281-282 SYM denotes <
T12773 280-281 NN denotes p
T12772 279-280 -LRB- denotes (
T12771 271-278 NN denotes -N5-Mut
T12770 254-270 NN denotes HIV-1Lai/Bal-env
T12769 249-253 IN denotes with
T12768 240-248 VB denotes infected
T12767 234-239 NN denotes cells
T12766 231-233 IN denotes in
T12765 221-230 VB denotes inhibited
T12764 207-220 RB denotes significantly
T12763 202-206 VB denotes were
T12762 195-201 NN denotes levels
T12761 191-194 NN denotes p24
T12760 189-190 -COMMA- denotes ,
T12759 182-189 RB denotes However
T12758 179-180 -RRB- denotes )
T12757 177-179 NN denotes 5B
T12756 170-176 NN denotes Figure
T12755 169-170 -LRB- denotes (
T12754 163-168 NN denotes virus
T12753 156-162 JJ denotes mutant
T12752 151-155 NN denotes κB-I
T12751 147-150 DT denotes the
T12750 142-146 IN denotes with
T12749 140-141 -COMMA- denotes ,
T12748 134-140 NN denotes levels
T12747 128-133 JJ denotes lower
T12746 125-127 TO denotes to
T12745 123-124 -COMMA- denotes ,
T12744 121-123 CC denotes or
T12743 111-120 JJ denotes wild-type
T12742 107-110 DT denotes the
T12741 100-106 CC denotes either
T12740 95-99 IN denotes with
T12739 86-94 VB denotes infected
T12738 81-85 VB denotes were
T12737 75-80 NN denotes cells
T12736 71-74 DT denotes the
T12735 66-70 WRB denotes when
T12734 56-65 VB denotes increased
T12733 49-55 NN denotes levels
T12732 45-48 NN denotes p24
T12731 43-44 -COMMA- denotes ,
T12730 40-43 NN denotes MTb
T12729 35-39 IN denotes with
T12728 23-34 VB denotes co-infected
T12727 18-22 VB denotes were
T12726 9-17 NN denotes cultures
T12725 5-8 DT denotes the
T12724 0-4 WRB denotes When
R9765 T12726 T12725 arg1Of cultures,the
R9766 T12726 T12727 arg1Of cultures,were
R9767 T12726 T12728 arg2Of cultures,co-infected
R9768 T12728 T12724 arg2Of co-infected,When
R9769 T12728 T12727 arg2Of co-infected,were
R9770 T12728 T12729 arg1Of co-infected,with
R9771 T12730 T12729 arg2Of MTb,with
R9772 T12733 T12732 arg1Of levels,p24
R9773 T12733 T12734 arg1Of levels,increased
R9774 T12734 T12724 arg1Of increased,When
R9775 T12734 T12731 arg1Of increased,","
R9776 T12734 T12735 arg1Of increased,when
R9777 T12737 T12736 arg1Of cells,the
R9778 T12737 T12738 arg1Of cells,were
R9779 T12737 T12739 arg2Of cells,infected
R9780 T12739 T12735 arg2Of infected,when
R9781 T12739 T12738 arg2Of infected,were
R9782 T12739 T12740 arg1Of infected,with
R9783 T12739 T12749 arg1Of infected,","
R9784 T12739 T12750 arg1Of infected,with
R9785 T12743 T12740 arg2Of wild-type,with
R9786 T12743 T12741 arg1Of wild-type,either
R9787 T12743 T12742 arg1Of wild-type,the
R9788 T12743 T12744 arg1Of wild-type,or
R9789 T12743 T12745 arg1Of wild-type,","
R9790 T12743 T12746 arg1Of wild-type,to
R9791 T12748 T12746 arg2Of levels,to
R9792 T12748 T12747 arg1Of levels,lower
R9793 T12754 T12750 arg2Of virus,with
R9794 T12754 T12751 arg1Of virus,the
R9795 T12754 T12752 arg1Of virus,κB-I
R9796 T12754 T12753 arg1Of virus,mutant
R9797 T12754 T12755 arg1Of virus,(
R9798 T12757 T12755 arg2Of 5B,(
R9799 T12757 T12756 arg1Of 5B,Figure
R9800 T12758 T12755 arg3Of ),(
R9801 T12762 T12761 arg1Of levels,p24
R9802 T12762 T12763 arg1Of levels,were
R9803 T12762 T12765 arg2Of levels,inhibited
R9804 T12765 T12759 arg1Of inhibited,However
R9805 T12765 T12760 arg1Of inhibited,","
R9806 T12765 T12763 arg2Of inhibited,were
R9807 T12765 T12764 arg1Of inhibited,significantly
R9808 T12765 T12766 arg1Of inhibited,in
R9809 T12767 T12766 arg2Of cells,in
R9810 T12767 T12768 arg2Of cells,infected
R9811 T12768 T12769 arg1Of infected,with
R9812 T12771 T12769 arg2Of -N5-Mut,with
R9813 T12771 T12770 arg1Of -N5-Mut,HIV-1Lai/Bal-env
R9814 T12771 T12772 arg1Of -N5-Mut,(
R9815 T12771 T12777 arg1Of -N5-Mut,(
R9816 T12773 T12772 arg2Of p,(
R9817 T12773 T12774 arg1Of p,<
R9818 T12773 T12775 arg1Of p,0.01
R9819 T12776 T12772 arg3Of ),(
R9820 T12779 T12777 arg2Of 5D,(
R9821 T12779 T12778 arg1Of 5D,Figure
R9822 T12780 T12777 arg3Of ),(
R9823 T12784 T12783 arg1Of levels,p24
R9824 T12784 T12785 arg1Of levels,were
R9825 T12784 T12787 arg1Of levels,lower
R9826 T12785 T12781 arg1Of were,Moreover
R9827 T12785 T12782 arg1Of were,","
R9828 T12785 T12788 arg1Of were,at
R9829 T12787 T12785 arg2Of lower,were
R9830 T12787 T12786 arg1Of lower,significantly
R9831 T12789 T12788 arg2Of day,at
R9832 T12789 T12790 arg1Of day,12
R9833 T12789 T12791 arg1Of day,in
R9834 T12792 T12791 arg2Of cultures,in
R9835 T12792 T12793 arg2Of cultures,infected
R9836 T12793 T12794 arg1Of infected,with
R9837 T12793 T12800 arg1Of infected,as
R9838 T12796 T12795 arg1Of II-Mut,HIV-1Lai/Bal-env-κB
R9839 T12796 T12797 arg1Of II-Mut,and
R9840 T12797 T12794 arg2Of and,with
R9841 T12799 T12797 arg2Of I+II-Mut,and
R9842 T12799 T12798 arg1Of I+II-Mut,HIV-1Lai/Bal-env-κB
R9843 T12801 T12800 arg2Of compared,as
R9844 T12801 T12802 arg1Of compared,to
R9845 T12803 T12802 arg2Of infection,to
R9846 T12803 T12804 arg1Of infection,of
R9847 T12805 T12804 arg2Of cells,of
R9848 T12805 T12806 arg1Of cells,with
R9849 T12808 T12806 arg2Of virus,with
R9850 T12808 T12807 arg1Of virus,wild-type
R9851 T12808 T12809 arg1Of virus,(
R9852 T12811 T12809 arg2Of 5D,(
R9853 T12811 T12810 arg1Of 5D,Figure
R9854 T12812 T12809 arg3Of ),(
R9855 T12816 T12817 arg1Of replication,of
R9856 T12816 T12821 arg1Of replication,with
R9857 T12816 T12839 arg1Of replication,was
R9858 T12816 T12840 arg2Of replication,diminished
R9859 T12820 T12817 arg2Of virus,of
R9860 T12820 T12818 arg1Of virus,the
R9861 T12820 T12819 arg1Of virus,mutant
R9862 T12823 T12824 arg1Of single,","
R9863 T12825 T12824 arg2Of proximal,","
R9864 T12829 T12821 arg2Of mutation,with
R9865 T12829 T12822 arg1Of mutation,the
R9866 T12829 T12823 arg1Of mutation,single
R9867 T12829 T12825 arg1Of mutation,proximal
R9868 T12829 T12826 arg1Of mutation,NF-κB
R9869 T12829 T12827 arg1Of mutation,binding
R9870 T12829 T12828 arg1Of mutation,site
R9871 T12829 T12830 arg1Of mutation,in
R9872 T12834 T12830 arg2Of element,in
R9873 T12834 T12831 arg1Of element,the
R9874 T12834 T12832 arg1Of element,shared
R9875 T12834 T12833 arg1Of element,NFAT5/NF-κB
R9876 T12834 T12835 arg1Of element,(
R9877 T12837 T12835 arg2Of I-Mut,(
R9878 T12837 T12836 arg1Of I-Mut,HIV-1Lai/Bal-env-κB
R9879 T12838 T12835 arg3Of ),(
R9880 T12840 T12815 arg2Of diminished,although
R9881 T12840 T12839 arg2Of diminished,was
R9882 T12842 T12843 arg1Of this,was
R9883 T12842 T12845 arg1Of this,significant
R9884 T12843 T12813 arg1Of was,Notably
R9885 T12843 T12814 arg1Of was,","
R9886 T12843 T12815 arg1Of was,although
R9887 T12843 T12841 arg1Of was,","
R9888 T12843 T12844 arg1Of was,not
R9889 T12843 T12846 arg1Of was,at
R9890 T12845 T12843 arg2Of significant,was
R9891 T12847 T12846 arg2Of day,at
R9892 T12847 T12848 arg1Of day,12
R9893 T12847 T12849 arg1Of day,(
R9894 T12851 T12849 arg2Of 5B–5D,(
R9895 T12851 T12850 arg1Of 5B–5D,Figures
R9896 T12852 T12849 arg3Of ),(

bionlp-st-ge-2016-test-proteins

Id Subject Object Predicate Lexical cue
T13084 663-666 Protein denotes env
T13083 427-430 Protein denotes env
T13082 396-399 Protein denotes env
T13081 311-314 Protein denotes p24
T13080 267-270 Protein denotes env
T13079 191-194 Protein denotes p24
T13078 45-48 Protein denotes p24

bionlp-st-ge-2016-uniprot

Id Subject Object Predicate Lexical cue
T13225 311-314 http://www.uniprot.org/uniprot/P03366 denotes p24
T13224 191-194 http://www.uniprot.org/uniprot/P03366 denotes p24
T13223 45-48 http://www.uniprot.org/uniprot/P03366 denotes p24
T13219 311-314 http://www.uniprot.org/uniprot/P04585 denotes p24
T13218 191-194 http://www.uniprot.org/uniprot/P04585 denotes p24
T13217 45-48 http://www.uniprot.org/uniprot/P04585 denotes p24
T13213 311-314 http://www.uniprot.org/uniprot/P12497 denotes p24
T13212 191-194 http://www.uniprot.org/uniprot/P12497 denotes p24
T13211 45-48 http://www.uniprot.org/uniprot/P12497 denotes p24
T13207 311-314 http://www.uniprot.org/uniprot/P04591 denotes p24
T13206 191-194 http://www.uniprot.org/uniprot/P04591 denotes p24
T13205 45-48 http://www.uniprot.org/uniprot/P04591 denotes p24
T13202 663-666 http://www.uniprot.org/uniprot/P04578 denotes env
T13201 427-430 http://www.uniprot.org/uniprot/P04578 denotes env
T13200 396-399 http://www.uniprot.org/uniprot/P04578 denotes env
T13199 267-270 http://www.uniprot.org/uniprot/P04578 denotes env
T13177 629-634 http://www.uniprot.org/uniprot/O94916 denotes NFAT5

GO-MF

Id Subject Object Predicate Lexical cue
T13101 587-600 http://purl.obolibrary.org/obo/GO_0051059 denotes NF-κB binding
T13098 593-600 http://purl.obolibrary.org/obo/GO_0005488 denotes binding

GO-CC

Id Subject Object Predicate Lexical cue
T13108 471-476 http://purl.obolibrary.org/obo/GO_0005623 denotes cells
T13107 234-239 http://purl.obolibrary.org/obo/GO_0005623 denotes cells
T13106 75-80 http://purl.obolibrary.org/obo/GO_0005623 denotes cells

sentences

Id Subject Object Predicate Lexical cue
T12311 511-744 Sentence denotes Notably, although replication of the mutant virus with the single, proximal NF-κB binding site mutation in the shared NFAT5/NF-κB element (HIV-1Lai/Bal-env-κB I-Mut) was diminished, this was not significant at day 12 (Figures 5B–5D).
T12310 301-510 Sentence denotes Moreover, p24 levels were significantly lower at day 12 in cultures infected with HIV-1Lai/Bal-env-κB II-Mut and HIV-1Lai/Bal-env-κB I+II-Mut as compared to infection of cells with wild-type virus (Figure 5D).
T12309 182-300 Sentence denotes However, p24 levels were significantly inhibited in cells infected with HIV-1Lai/Bal-env -N5-Mut (p<0.01) (Figure 5D).
T12308 0-181 Sentence denotes When the cultures were co-infected with MTb, p24 levels increased when the cells were infected with either the wild-type or, to lower levels, with the κB-I mutant virus (Figure 5B).
T210 0-181 Sentence denotes When the cultures were co-infected with MTb, p24 levels increased when the cells were infected with either the wild-type or, to lower levels, with the κB-I mutant virus (Figure 5B).
T211 182-300 Sentence denotes However, p24 levels were significantly inhibited in cells infected with HIV-1Lai/Bal-env -N5-Mut (p<0.01) (Figure 5D).
T212 301-510 Sentence denotes Moreover, p24 levels were significantly lower at day 12 in cultures infected with HIV-1Lai/Bal-env-κB II-Mut and HIV-1Lai/Bal-env-κB I+II-Mut as compared to infection of cells with wild-type virus (Figure 5D).
T213 511-744 Sentence denotes Notably, although replication of the mutant virus with the single, proximal NF-κB binding site mutation in the shared NFAT5/NF-κB element (HIV-1Lai/Bal-env-κB I-Mut) was diminished, this was not significant at day 12 (Figures 5B–5D).

simple1

Id Subject Object Predicate Lexical cue
T13147 663-666 Protein denotes env
T13146 427-430 Protein denotes env
T13145 396-399 Protein denotes env
T13144 311-314 Protein denotes p24
T13143 267-270 Protein denotes env
T13142 191-194 Protein denotes p24
T13141 45-48 Protein denotes p24

BioNLP16_DUT

Id Subject Object Predicate Lexical cue
T13569 221-230 Negative_regulation denotes inhibited
T13568 56-65 Positive_regulation denotes increased
T13562 663-666 Protein denotes env
T13561 427-430 Protein denotes env
T13560 396-399 Protein denotes env
T13559 311-314 Protein denotes p24
T13558 267-270 Protein denotes env
T13557 191-194 Protein denotes p24
T13556 45-48 Protein denotes p24
R10126 T13556 T13568 themeOf p24,increased
R10127 T13557 T13569 themeOf p24,inhibited

BioNLP16_Messiy

Id Subject Object Predicate Lexical cue
T13307 341-346 Positive_regulation denotes lower
T13306 221-230 Negative_regulation denotes inhibited
T13305 56-65 Positive_regulation denotes increased
T13298 663-666 Protein denotes env
T13297 427-430 Protein denotes env
T13296 396-399 Protein denotes env
T13295 311-314 Protein denotes p24
T13294 267-270 Protein denotes env
T13293 191-194 Protein denotes p24
T13292 45-48 Protein denotes p24
R10086 T13292 T13305 themeOf p24,increased
R10087 T13293 T13306 themeOf p24,inhibited
R10088 T13295 T13307 themeOf p24,lower

DLUT931

Id Subject Object Predicate Lexical cue
T13265 341-346 Positive_regulation denotes lower
T13264 221-230 Negative_regulation denotes inhibited
T13263 56-65 Positive_regulation denotes increased
T13256 663-666 Protein denotes env
T13255 427-430 Protein denotes env
T13254 396-399 Protein denotes env
T13253 311-314 Protein denotes p24
T13252 267-270 Protein denotes env
T13251 191-194 Protein denotes p24
T13250 45-48 Protein denotes p24
R10075 T13250 T13263 themeOf p24,increased
R10076 T13251 T13264 themeOf p24,inhibited
R10077 T13253 T13265 themeOf p24,lower

bionlp-st-ge-2016-test-ihmc

Id Subject Object Predicate Lexical cue
T13642 672-675 Protein denotes Mut
T13641 40-44 Protein denotes MTb,
T13639 311-314 Protein denotes p24
T13630 280-281 Entity denotes p
T13629 468-509 Entity denotes of cells with wild-type virus (Figure 5D)
T13628 629-640 Protein denotes NFAT5/NF-κB
T13627 629-640 Protein denotes NFAT5/NF-κB
T13620 234-248 Entity denotes cells infected
T13611 152-155 Protein denotes B-I
T13608 45-48 Protein denotes p24
T13603 271-278 Protein denotes -N5-Mut
T13602 275-278 Protein denotes Mut
T13599 635-640 Protein denotes NF-κB
T13590 191-194 Protein denotes p24
T13586 271-278 Protein denotes -N5-Mut
T13580 601-605 Entity denotes site
T13574 71-80 Entity denotes the cells

bionlp-st-ge-2016-test-tees

Id Subject Object Predicate Lexical cue
T13425 672-675 Protein denotes Mut
T13424 667-671 Protein denotes κB I
T13423 663-666 Protein denotes env
T13422 638-640 Protein denotes κB
T13421 629-637 Protein denotes NFAT5/NF
T13420 587-592 Protein denotes NF-κB
T13419 431-433 Protein denotes κB
T13418 427-430 Protein denotes env
T13417 406-409 Protein denotes Mut
T13416 400-405 Protein denotes κB II
T13415 396-399 Protein denotes env
T13414 311-314 Protein denotes p24
T13413 221-230 Negative_regulation denotes inhibited
T13412 191-194 Protein denotes p24
T13411 56-65 Positive_regulation denotes increased
T13410 45-48 Protein denotes p24
R10104 T13410 T13411 themeOf p24,increased
R10105 T13412 T13413 themeOf p24,inhibited

testone

Id Subject Object Predicate Lexical cue
T12226 681-691 Negative_regulation denotes diminished
T12225 221-230 Negative_regulation denotes inhibited
T12220 663-666 Protein denotes env
T12219 427-430 Protein denotes env
T12218 396-399 Protein denotes env
T12217 311-314 Protein denotes p24
T12216 267-270 Protein denotes env
T12215 191-194 Protein denotes p24
T12214 45-48 Protein denotes p24
R9361 T12215 T12225 themeOf p24,inhibited

test3

Id Subject Object Predicate Lexical cue
T12294 681-691 Negative_regulation denotes diminished
T12293 663-666 Protein denotes env
T12292 427-430 Protein denotes env
T12291 396-399 Protein denotes env
T12290 311-314 Protein denotes p24
T12289 267-270 Protein denotes env
T12288 221-230 Negative_regulation denotes inhibited
T12287 191-194 Protein denotes p24
T12286 56-65 Positive_regulation denotes increased
T12285 45-48 Protein denotes p24
T12258 663-666 Protein denotes env
T12257 427-430 Protein denotes env
T12256 396-399 Protein denotes env
T12255 311-314 Protein denotes p24
T12254 267-270 Protein denotes env
T12253 191-194 Protein denotes p24
T12252 45-48 Protein denotes p24
R9364 T12285 T12286 themeOf p24,increased
R9365 T12287 T12288 themeOf p24,inhibited