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PMC:3320587 / 33474-34520 JSONTXT

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pmc-enju-pas

Id Subject Object Predicate Lexical cue
T25483 1021-1040 NN denotes d to HIV-1Lai/Bal-E
T25482 1019-1021 TO denotes re
T25481 1011-1019 VB denotes as compa
T25480 1008-1010 IN denotes 1,
T25479 1007-1008 -COMMA- denotes 0
T25478 1003-1007 CD denotes p<0.
T25477 1001-1002 SYM denotes ,
T25476 1000-1001 NN denotes *
T25475 999-1000 -COMMA- denotes *
T25474 997-999 SYM denotes ;
T25473 996-997 -COLON- denotes 5
T25472 992-996 CD denotes <0.0
T25471 991-992 SYM denotes p
T25470 989-990 NN denotes ,
T25469 988-989 -COMMA- denotes *
T25468 986-987 SYM denotes .
T25467 985-986 -RRB- denotes )
T25466 973-985 RB denotes respectively
T25465 971-972 -COMMA- denotes ,
T25464 959-971 NN denotes co-infection
T25463 955-958 NN denotes MTb
T25462 950-954 IN denotes with
T25461 946-949 CC denotes and
T25441 805-809 NN denotes PBMC
T25440 803-804 -RRB- denotes )
T25439 799-803 NN denotes bars
T25438 793-798 JJ denotes black
T25437 792-793 -LRB- denotes (
T25436 780-791 JJ denotes co-infected
T25435 776-779 NN denotes MTb
T25434 772-775 CC denotes and
T25433 770-771 -RRB- denotes )
T25432 766-770 NN denotes bars
T25431 761-765 JJ denotes grey
T25430 760-761 -LRB- denotes (
T25429 749-759 JJ denotes uninfected
T25428 745-748 NN denotes MTb
T25427 741-744 DT denotes the
T25426 738-740 IN denotes in
T25425 735-737 CD denotes 12
T25424 731-734 NN denotes day
T25423 728-730 IN denotes at
T25422 721-727 NN denotes levels
T25421 717-720 NN denotes p24
T25420 711-716 JJ denotes viral
T25419 706-710 VB denotes show
T25418 695-705 NN denotes Histograms
T25417 693-694 -RRB- denotes )
T25416 692-693 NN denotes C
T25415 691-692 -LRB- denotes (
T25414 675-690 JJ denotes post-infection.
T25413 672-674 CD denotes 12
T25412 668-671 CC denotes and
T25411 666-667 CD denotes 7
T25410 664-665 -COMMA- denotes ,
T25409 663-664 CD denotes 4
T25408 658-662 NN denotes days
T25407 655-657 IN denotes at
T25406 646-654 VB denotes measured
T25405 641-645 VB denotes were
T25404 628-640 NN denotes supernatants
T25403 620-627 NN denotes culture
T25402 617-619 IN denotes in
T25401 610-616 NN denotes levels
T25400 606-609 NN denotes p24
T25399 600-605 JJ denotes Viral
T25398 597-598 -RRB- denotes )
T25397 584-597 NN denotes cells∶bacilli
T25396 579-583 CD denotes 10∶1
T25395 578-579 -LRB- denotes (
T25394 570-577 NN denotes CDC1551
T25393 562-569 NN denotes isolate
T25392 558-561 NN denotes MTb
T25391 553-557 IN denotes with
T25390 541-552 JJ denotes co-infected
T25389 539-540 -RRB- denotes )
T25388 538-539 NN denotes B
T25387 537-538 -LRB- denotes (
T25386 534-536 CC denotes or
T25385 532-533 -COMMA- denotes ,
T25384 523-532 JJ denotes untreated
T25383 518-522 VB denotes left
T25382 516-517 -RRB- denotes )
T25381 515-516 NN denotes A
T25380 514-515 -LRB- denotes (
T25379 512-513 -COLON- denotes ;
T25378 506-512 CC denotes either
T25377 502-505 CC denotes and
T25376 478-501 NN denotes HIV-1Lai/Bal-env-N5-Mut
T25375 475-477 CC denotes or
T25374 473-474 -COMMA- denotes ,
T25373 465-473 NN denotes I+II-Mut
T25372 445-464 NN denotes HIV-1Lai/Bal-env-κB
T25371 443-444 -COMMA- denotes ,
T25370 437-443 NN denotes II-Mut
T25369 417-436 NN denotes HIV-1Lai/Bal-env-κB
T25368 415-416 -COMMA- denotes ,
T25367 410-415 NN denotes I-Mut
T25366 390-409 NN denotes HIV-1Lai/Bal-env-κB
T25365 382-389 NN denotes mutants
T25364 378-381 DT denotes the
T25363 375-377 CC denotes or
T25362 355-374 NN denotes HIV-1Lai/Bal-env-WT
T25361 348-354 NN denotes TCID50
T25360 343-347 CD denotes 1000
T25359 338-342 IN denotes with
T25358 329-337 VB denotes infected
T25357 324-328 VB denotes were
T25356 317-323 NN denotes donors
T25355 310-316 JJ denotes normal
T25354 305-309 CD denotes four
T25353 300-304 IN denotes from
T25352 295-299 NN denotes PBMC
T25351 290-293 NN denotes MTb
T25350 285-289 IN denotes with
T25349 272-284 NN denotes co-infection
T25348 266-271 IN denotes after
T25347 261-265 NN denotes PBMC
T25346 255-260 JJ denotes human
T25345 252-254 IN denotes in
T25344 240-251 NN denotes replication
T25343 234-239 NN denotes virus
T25342 224-233 JJ denotes R5-tropic
T25341 215-223 VB denotes inhibits
T25340 211-214 NN denotes LTR
T25339 209-210 NN denotes B
T25338 201-208 NN denotes subtype
T25337 195-200 NN denotes HIV-1
T25336 191-194 DT denotes the
T25335 188-190 IN denotes in
T25334 182-187 NN denotes sites
T25333 174-181 NN denotes binding
T25332 168-173 NN denotes NFAT5
T25331 165-167 CC denotes or
T25330 159-164 NN denotes NF-κB
T25329 155-158 DT denotes the
T25328 152-154 IN denotes of
T25327 141-151 NN denotes disruption
T25326 132-140 JJ denotes Specific
T25325 127-130 NN denotes LTR
T25324 123-126 DT denotes the
T25323 120-122 TO denotes to
T25322 114-119 NN denotes NF-κB
T25321 110-113 CC denotes and
T25320 104-109 NN denotes NFAT5
T25319 101-103 IN denotes of
T25318 93-100 NN denotes binding
T25317 90-92 IN denotes on
T25316 82-89 VB denotes depends
T25315 77-81 NN denotes PBMC
T25314 74-76 IN denotes in
T25313 62-73 NN denotes replication
T25312 56-61 NN denotes HIV-1
T25311 44-55 JJ denotes MTb-induced
T25460 938-945 IN denotes without
T25459 937-938 -LRB- denotes (
T25458 926-936 NN denotes conditions
T25457 913-925 JJ denotes experimental
T25456 908-912 JJ denotes same
T25455 904-907 DT denotes the
T25454 898-903 IN denotes under
T25453 886-897 NN denotes replication
T25452 880-885 NN denotes virus
T25451 870-879 JJ denotes wild-type
T25450 867-869 TO denotes to
T25449 858-866 VB denotes compared
T25448 854-857 VB denotes was
T25447 846-853 NN denotes viruses
T25446 839-845 JJ denotes mutant
T25445 835-838 DT denotes the
T25444 832-834 IN denotes of
T25443 820-831 NN denotes Replication
T25442 810-818 NN denotes cultures
R18449 T25313 T25311 arg1Of replication,MTb-induced
R18450 T25313 T25312 arg1Of replication,HIV-1
R18451 T25313 T25314 arg1Of replication,in
R18452 T25313 T25316 arg1Of replication,depends
R18453 T25315 T25314 arg2Of PBMC,in
R18454 T25316 T25317 arg1Of depends,on
R18455 T25318 T25317 arg2Of binding,on
R18456 T25318 T25319 arg1Of binding,of
R18457 T25318 T25323 arg1Of binding,to
R18458 T25320 T25321 arg1Of NFAT5,and
R18459 T25321 T25319 arg2Of and,of
R18460 T25322 T25321 arg2Of NF-κB,and
R18461 T25325 T25323 arg2Of LTR,to
R18462 T25325 T25324 arg1Of LTR,the
R18463 T25327 T25326 arg1Of disruption,Specific
R18464 T25327 T25328 arg1Of disruption,of
R18465 T25327 T25335 arg1Of disruption,in
R18466 T25327 T25341 arg1Of disruption,inhibits
R18467 T25330 T25331 arg1Of NF-κB,or
R18468 T25332 T25331 arg2Of NFAT5,or
R18469 T25334 T25328 arg2Of sites,of
R18470 T25334 T25329 arg1Of sites,the
R18471 T25334 T25330 arg1Of sites,NF-κB
R18472 T25334 T25332 arg1Of sites,NFAT5
R18473 T25334 T25333 arg1Of sites,binding
R18474 T25340 T25335 arg2Of LTR,in
R18475 T25340 T25336 arg1Of LTR,the
R18476 T25340 T25337 arg1Of LTR,HIV-1
R18477 T25340 T25338 arg1Of LTR,subtype
R18478 T25340 T25339 arg1Of LTR,B
R18479 T25341 T25348 arg1Of inhibits,after
R18480 T25344 T25341 arg2Of replication,inhibits
R18481 T25344 T25342 arg1Of replication,R5-tropic
R18482 T25344 T25343 arg1Of replication,virus
R18483 T25344 T25345 arg1Of replication,in
R18484 T25347 T25345 arg2Of PBMC,in
R18485 T25347 T25346 arg1Of PBMC,human
R18486 T25349 T25348 arg2Of co-infection,after
R18487 T25349 T25350 arg1Of co-infection,with
R18488 T25351 T25350 arg2Of MTb,with
R18489 T25352 T25353 arg1Of PBMC,from
R18490 T25352 T25357 arg1Of PBMC,were
R18491 T25352 T25358 arg2Of PBMC,infected
R18492 T25356 T25353 arg2Of donors,from
R18493 T25356 T25354 arg1Of donors,four
R18494 T25356 T25355 arg1Of donors,normal
R18495 T25358 T25357 arg2Of infected,were
R18496 T25358 T25359 arg1Of infected,with
R18497 T25358 T25377 arg1Of infected,and
R18498 T25362 T25360 arg1Of HIV-1Lai/Bal-env-WT,1000
R18499 T25362 T25361 arg1Of HIV-1Lai/Bal-env-WT,TCID50
R18500 T25362 T25363 arg1Of HIV-1Lai/Bal-env-WT,or
R18501 T25363 T25368 arg1Of or,","
R18502 T25365 T25364 arg1Of mutants,the
R18503 T25367 T25363 arg2Of I-Mut,or
R18504 T25367 T25365 arg1Of I-Mut,mutants
R18505 T25367 T25366 arg1Of I-Mut,HIV-1Lai/Bal-env-κB
R18506 T25368 T25371 arg1Of ",",","
R18507 T25370 T25368 arg2Of II-Mut,","
R18508 T25370 T25369 arg1Of II-Mut,HIV-1Lai/Bal-env-κB
R18509 T25371 T25375 arg1Of ",",or
R18510 T25373 T25371 arg2Of I+II-Mut,","
R18511 T25373 T25372 arg1Of I+II-Mut,HIV-1Lai/Bal-env-κB
R18512 T25375 T25359 arg2Of or,with
R18513 T25375 T25374 arg1Of or,","
R18514 T25376 T25375 arg2Of HIV-1Lai/Bal-env-N5-Mut,or
R18515 T25381 T25380 arg2Of A,(
R18516 T25381 T25383 arg1Of A,left
R18517 T25381 T25390 arg1Of A,co-infected
R18518 T25382 T25380 arg3Of ),(
R18519 T25383 T25377 arg2Of left,and
R18520 T25383 T25378 arg1Of left,either
R18521 T25383 T25379 arg1Of left,;
R18522 T25383 T25390 modOf left,co-infected
R18523 T25384 T25386 arg1Of untreated,or
R18524 T25386 T25385 arg1Of or,","
R18525 T25388 T25383 arg2Of B,left
R18526 T25388 T25384 arg1Of B,untreated
R18527 T25388 T25387 arg2Of B,(
R18528 T25389 T25387 arg3Of ),(
R18529 T25390 T25391 arg1Of co-infected,with
R18530 T25394 T25391 arg2Of CDC1551,with
R18531 T25394 T25392 arg1Of CDC1551,MTb
R18532 T25394 T25393 arg1Of CDC1551,isolate
R18533 T25394 T25395 arg1Of CDC1551,(
R18534 T25397 T25395 arg2Of cells∶bacilli,(
R18535 T25397 T25396 arg1Of cells∶bacilli,10∶1
R18536 T25398 T25395 arg3Of ),(
R18537 T25401 T25399 arg1Of levels,Viral
R18538 T25401 T25400 arg1Of levels,p24
R18539 T25401 T25402 arg1Of levels,in
R18540 T25401 T25405 arg1Of levels,were
R18541 T25401 T25406 arg2Of levels,measured
R18542 T25404 T25402 arg2Of supernatants,in
R18543 T25404 T25403 arg1Of supernatants,culture
R18544 T25406 T25405 arg2Of measured,were
R18545 T25406 T25407 arg1Of measured,at
R18546 T25406 T25410 arg1Of measured,","
R18547 T25409 T25407 arg2Of 4,at
R18548 T25409 T25408 arg1Of 4,days
R18549 T25411 T25412 arg1Of 7,and
R18550 T25413 T25412 arg2Of 12,and
R18551 T25416 T25415 arg2Of C,(
R18552 T25417 T25415 arg3Of ),(
R18553 T25418 T25411 arg1Of Histograms,7
R18554 T25418 T25413 arg1Of Histograms,12
R18555 T25418 T25414 arg1Of Histograms,post-infection.
R18556 T25418 T25415 arg1Of Histograms,(
R18557 T25418 T25419 arg1Of Histograms,show
R18558 T25419 T25410 arg2Of show,","
R18559 T25419 T25423 arg1Of show,at
R18560 T25419 T25426 arg1Of show,in
R18561 T25422 T25419 arg2Of levels,show
R18562 T25422 T25420 arg1Of levels,viral
R18563 T25422 T25421 arg1Of levels,p24
R18564 T25424 T25423 arg2Of day,at
R18565 T25424 T25425 arg1Of day,12
R18566 T25429 T25428 arg1Of uninfected,MTb
R18567 T25432 T25427 arg1Of bars,the
R18568 T25432 T25429 arg1Of bars,uninfected
R18569 T25432 T25430 arg2Of bars,(
R18570 T25432 T25431 arg1Of bars,grey
R18571 T25432 T25434 arg1Of bars,and
R18572 T25433 T25430 arg3Of ),(
R18573 T25434 T25426 arg2Of and,in
R18574 T25436 T25437 arg1Of co-infected,(
R18575 T25439 T25437 arg2Of bars,(
R18576 T25439 T25438 arg1Of bars,black
R18577 T25440 T25437 arg3Of ),(
R18578 T25442 T25434 arg2Of cultures,and
R18579 T25442 T25435 arg1Of cultures,MTb
R18580 T25442 T25436 arg1Of cultures,co-infected
R18581 T25442 T25441 arg1Of cultures,PBMC
R18582 T25443 T25444 arg1Of Replication,of
R18583 T25443 T25448 arg1Of Replication,was
R18584 T25443 T25449 arg2Of Replication,compared
R18585 T25447 T25444 arg2Of viruses,of
R18586 T25447 T25445 arg1Of viruses,the
R18587 T25447 T25446 arg1Of viruses,mutant
R18588 T25449 T25448 arg2Of compared,was
R18589 T25449 T25450 arg1Of compared,to
R18590 T25449 T25454 arg1Of compared,under
R18591 T25449 T25472 arg1Of compared,<0.0
R18592 T25449 T25479 arg1Of compared,0
R18593 T25449 T25480 arg1Of compared,"1,"
R18594 T25453 T25450 arg2Of replication,to
R18595 T25453 T25451 arg1Of replication,wild-type
R18596 T25453 T25452 arg1Of replication,virus
R18597 T25458 T25454 arg2Of conditions,under
R18598 T25458 T25455 arg1Of conditions,the
R18599 T25458 T25456 arg1Of conditions,same
R18600 T25458 T25457 arg1Of conditions,experimental
R18601 T25458 T25459 arg1Of conditions,(
R18602 T25458 T25468 arg1Of conditions,.
R18603 T25458 T25469 arg1Of conditions,*
R18604 T25460 T25461 arg1Of without,and
R18605 T25461 T25459 arg2Of and,(
R18606 T25462 T25461 arg2Of with,and
R18607 T25464 T25460 arg2Of co-infection,without
R18608 T25464 T25462 arg2Of co-infection,with
R18609 T25464 T25463 arg1Of co-infection,MTb
R18610 T25464 T25465 arg1Of co-infection,","
R18611 T25464 T25466 arg1Of co-infection,respectively
R18612 T25467 T25459 arg3Of ),(
R18613 T25470 T25469 arg2Of ",",*
R18614 T25470 T25471 arg1Of ",",p
R18615 T25472 T25473 arg1Of <0.0,5
R18616 T25474 T25475 arg1Of ; ,*
R18617 T25476 T25475 arg2Of *,*
R18618 T25476 T25477 arg1Of *,","
R18619 T25478 T25473 arg2Of p<0.,5
R18620 T25478 T25474 arg1Of p<0.,;
R18621 T25481 T25480 arg2Of as compa,"1,"
R18622 T25481 T25482 arg1Of as compa,re
R18623 T25483 T25482 arg2Of d to HIV-1Lai/Bal-E,re

bionlp-st-ge-2016-test-proteins

Id Subject Object Predicate Lexical cue
T25286 368-371 Protein denotes env
T25285 104-109 Protein denotes NFAT5
T25292 717-720 Protein denotes p24
T25291 606-609 Protein denotes p24
T25290 491-494 Protein denotes env
T25289 458-461 Protein denotes env
T25288 430-433 Protein denotes env
T25287 403-406 Protein denotes env

bionlp-st-ge-2016-uniprot

Id Subject Object Predicate Lexical cue
T25498 717-720 http://www.uniprot.org/uniprot/P03366 denotes p24
T25497 606-609 http://www.uniprot.org/uniprot/P03366 denotes p24
T25496 717-720 http://www.uniprot.org/uniprot/P04585 denotes p24
T25495 606-609 http://www.uniprot.org/uniprot/P04585 denotes p24
T25494 717-720 http://www.uniprot.org/uniprot/P12497 denotes p24
T25493 606-609 http://www.uniprot.org/uniprot/P12497 denotes p24
T25492 717-720 http://www.uniprot.org/uniprot/P04591 denotes p24
T25491 606-609 http://www.uniprot.org/uniprot/P04591 denotes p24
T25490 491-494 http://www.uniprot.org/uniprot/P04578 denotes env
T25489 458-461 http://www.uniprot.org/uniprot/P04578 denotes env
T25488 430-433 http://www.uniprot.org/uniprot/P04578 denotes env
T25487 403-406 http://www.uniprot.org/uniprot/P04578 denotes env
T25486 368-371 http://www.uniprot.org/uniprot/P04578 denotes env
T25485 168-173 http://www.uniprot.org/uniprot/O94916 denotes NFAT5
T25484 104-109 http://www.uniprot.org/uniprot/O94916 denotes NFAT5

GO-MF

Id Subject Object Predicate Lexical cue
T25294 174-181 http://purl.obolibrary.org/obo/GO_0005488 denotes binding
T25293 93-100 http://purl.obolibrary.org/obo/GO_0005488 denotes binding

sentences

Id Subject Object Predicate Lexical cue
T25275 820-1046 Sentence denotes Replication of the mutant viruses was compared to wild-type virus replication under the same experimental conditions (without and with MTb co-infection, respectively). *, p<0.05; **, p<0.01, as compared to HIV-1Lai/Bal-Env-WT.
T25274 600-819 Sentence denotes Viral p24 levels in culture supernatants were measured at days 4, 7 and 12 post-infection. (C) Histograms show viral p24 levels at day 12 in the MTb uninfected (grey bars) and MTb co-infected (black bars) PBMC cultures.
T25273 295-599 Sentence denotes PBMC from four normal donors were infected with 1000 TCID50 HIV-1Lai/Bal-env-WT or the mutants HIV-1Lai/Bal-env-κB I-Mut, HIV-1Lai/Bal-env-κB II-Mut, HIV-1Lai/Bal-env-κB I+II-Mut, or HIV-1Lai/Bal-env-N5-Mut and either; (A) left untreated, or (B) co-infected with MTb isolate CDC1551 (10∶1 cells∶bacilli).
T25272 132-294 Sentence denotes Specific disruption of the NF-κB or NFAT5 binding sites in the HIV-1 subtype B LTR inhibits R5-tropic virus replication in human PBMC after co-infection with MTb.
T25271 44-131 Sentence denotes MTb-induced HIV-1 replication in PBMC depends on binding of NFAT5 and NF-κB to the LTR.
T197 0-131 Sentence denotes 10.1371/journal.ppat.1002620.g004 Figure 4 MTb-induced HIV-1 replication in PBMC depends on binding of NFAT5 and NF-κB to the LTR.
T198 132-294 Sentence denotes Specific disruption of the NF-κB or NFAT5 binding sites in the HIV-1 subtype B LTR inhibits R5-tropic virus replication in human PBMC after co-infection with MTb.
T199 295-599 Sentence denotes PBMC from four normal donors were infected with 1000 TCID50 HIV-1Lai/Bal-env-WT or the mutants HIV-1Lai/Bal-env-κB I-Mut, HIV-1Lai/Bal-env-κB II-Mut, HIV-1Lai/Bal-env-κB I+II-Mut, or HIV-1Lai/Bal-env-N5-Mut and either; (A) left untreated, or (B) co-infected with MTb isolate CDC1551 (10∶1 cells∶bacilli).
T200 600-819 Sentence denotes Viral p24 levels in culture supernatants were measured at days 4, 7 and 12 post-infection. (C) Histograms show viral p24 levels at day 12 in the MTb uninfected (grey bars) and MTb co-infected (black bars) PBMC cultures.
T201 820-1046 Sentence denotes Replication of the mutant viruses was compared to wild-type virus replication under the same experimental conditions (without and with MTb co-infection, respectively). *, p<0.05; **, p<0.01, as compared to HIV-1Lai/Bal-Env-WT.

simple1

Id Subject Object Predicate Lexical cue
T25310 717-720 Protein denotes p24
T25309 606-609 Protein denotes p24
T25308 491-494 Protein denotes env
T25307 458-461 Protein denotes env
T25306 430-433 Protein denotes env
T25305 403-406 Protein denotes env
T25304 368-371 Protein denotes env
T25303 104-109 Protein denotes NFAT5

BioNLP16_DUT

Id Subject Object Predicate Lexical cue
T25790 93-100 Binding denotes binding
T25789 717-720 Protein denotes p24
T25788 606-609 Protein denotes p24
T25787 491-494 Protein denotes env
T25786 458-461 Protein denotes env
T25785 430-433 Protein denotes env
T25784 403-406 Protein denotes env
T25783 368-371 Protein denotes env
T25782 104-109 Protein denotes NFAT5
R18837 T25782 T25790 themeOf NFAT5,binding

BioNLP16_Messiy

Id Subject Object Predicate Lexical cue
T25518 82-89 Positive_regulation denotes depends
T25517 93-100 Binding denotes binding
T25516 717-720 Protein denotes p24
T25515 606-609 Protein denotes p24
T25514 491-494 Protein denotes env
T25513 458-461 Protein denotes env
T25512 430-433 Protein denotes env
T25511 403-406 Protein denotes env
T25510 368-371 Protein denotes env
T25509 104-109 Protein denotes NFAT5
R18626 T25509 T25517 themeOf NFAT5,binding
R18627 T25517 T25518 themeOf binding,depends

DLUT931

Id Subject Object Predicate Lexical cue
T25508 82-89 Positive_regulation denotes depends
T25507 93-100 Binding denotes binding
T25506 717-720 Protein denotes p24
T25505 606-609 Protein denotes p24
T25504 491-494 Protein denotes env
T25503 458-461 Protein denotes env
T25502 430-433 Protein denotes env
T25501 403-406 Protein denotes env
T25500 368-371 Protein denotes env
T25499 104-109 Protein denotes NFAT5
R18624 T25499 T25507 themeOf NFAT5,binding
R18625 T25507 T25508 themeOf binding,depends

bionlp-st-ge-2016-test-ihmc

Id Subject Object Predicate Lexical cue
T25814 955-972 Regulation denotes MTb co-infection,
T25813 776-804 Regulation denotes MTb co-infected (black bars)
T25812 152-187 Binding denotes of the NF-κB or NFAT5 binding sites
T25811 90-119 Binding denotes on binding of NFAT5 and NF-κB
T25810 606-609 Protein denotes p24
T25809 558-561 Protein denotes MTb
T25808 255-265 Entity denotes human PBMC
T25807 620-640 Entity denotes culture supernatants
T25806 159-164 Protein denotes NF-κB
T25805 991-993 Entity denotes p<
T25804 104-109 Protein denotes NFAT5
T25803 77-81 Entity denotes PBMC
T25802 955-958 Protein denotes MTb
T25801 440-443 Protein denotes Mut
T25800 805-809 Entity denotes PBMC
T25799 152-187 Entity denotes of the NF-κB or NFAT5 binding sites
T25798 290-293 Protein denotes MTb
T25797 776-804 Protein denotes MTb co-infected (black bars)
T25796 741-771 Protein denotes the MTb uninfected (grey bars)
T25795 114-119 Protein denotes NF-κB
T25794 295-323 Entity denotes PBMC from four normal donors
T25793 44-55 Protein denotes MTb-induced
T25792 717-720 Protein denotes p24
T25791 168-173 Protein denotes NFAT5
R18838 T25795 T25811 themeOf NF-κB,on binding of NFAT5 and NF-κB
R18839 T25797 T25813 themeOf MTb co-infected (black bars),MTb co-infected (black bars)
R18840 T25799 T25812 themeOf of the NF-κB or NFAT5 binding sites,of the NF-κB or NFAT5 binding sites
R18841 T25802 T25814 themeOf MTb,"MTb co-infection,"
R18842 T25804 T25811 themeOf NFAT5,on binding of NFAT5 and NF-κB

bionlp-st-ge-2016-spacy-parsed

Id Subject Object Predicate Lexical cue
T25781 1045-1046 . denotes .
T25780 1035-1045 NNP denotes Bal-Env-WT
T25779 1034-1035 NNP denotes /
T25778 1026-1034 NNP denotes HIV-1Lai
T25777 1023-1025 TO denotes to
T25776 1014-1022 VBN denotes compared
T25775 1011-1013 IN denotes as
T25774 1009-1010 , denotes ,
T25773 1005-1009 CD denotes 0.01
T25772 1004-1005 NN denotes <
T25771 1003-1004 JJ denotes p
T25770 1001-1002 , denotes ,
T25769 999-1001 SYM denotes **
T25768 997-998 : denotes ;
T25767 993-997 CD denotes 0.05
T25766 992-993 RB denotes <
T25765 991-992 VB denotes p
T25764 989-990 , denotes ,
T25763 988-989 SYM denotes *
T25762 986-987 . denotes .
T25761 985-986 -RRB- denotes )
T25760 973-985 RB denotes respectively
T25759 971-972 , denotes ,
T25758 959-971 NN denotes co-infection
T25757 955-958 NNP denotes MTb
T25756 950-954 IN denotes with
T25755 946-949 CC denotes and
T25754 938-945 IN denotes without
T25753 937-938 -LRB- denotes (
T25752 926-936 NNS denotes conditions
T25751 913-925 JJ denotes experimental
T25750 908-912 JJ denotes same
T25749 904-907 DT denotes the
T25748 898-903 IN denotes under
T25747 886-897 NN denotes replication
T25746 880-885 NN denotes virus
T25745 870-879 JJ denotes wild-type
T25744 867-869 TO denotes to
T25743 858-866 VBN denotes compared
T25742 854-857 VBD denotes was
T25741 846-853 NNS denotes viruses
T25740 839-845 JJ denotes mutant
T25739 835-838 DT denotes the
T25738 832-834 IN denotes of
T25737 820-831 NN denotes Replication
T25736 818-819 . denotes .
T25735 810-818 NNS denotes cultures
T25734 805-809 NNP denotes PBMC
T25733 803-804 -RRB- denotes )
T25732 799-803 NNS denotes bars
T25731 793-798 JJ denotes black
T25730 792-793 -LRB- denotes (
T25729 780-791 VBD denotes co-infected
T25728 776-779 NNP denotes MTb
T25727 772-775 CC denotes and
T25726 770-771 -RRB- denotes )
T25725 766-770 NNS denotes bars
T25724 761-765 JJ denotes grey
T25723 760-761 -LRB- denotes (
T25722 749-759 JJ denotes uninfected
T25721 745-748 NNP denotes MTb
T25720 741-744 DT denotes the
T25719 738-740 IN denotes in
T25718 735-737 CD denotes 12
T25717 731-734 NN denotes day
T25716 728-730 IN denotes at
T25715 721-727 NNS denotes levels
T25714 717-720 JJ denotes p24
T25676 539-540 -RRB- denotes )
T25675 538-539 NNP denotes B
T25674 537-538 -LRB- denotes (
T25673 534-536 CC denotes or
T25672 532-533 , denotes ,
T25671 523-532 JJ denotes untreated
T25670 518-522 VBD denotes left
T25669 516-517 -RRB- denotes )
T25668 515-516 NNP denotes A
T25667 514-515 -LRB- denotes (
T25666 512-513 : denotes ;
T25665 506-512 RB denotes either
T25664 502-505 CC denotes and
T25663 487-501 NN denotes Bal-env-N5-Mut
T25662 486-487 NN denotes /
T25661 478-486 JJ denotes HIV-1Lai
T25660 475-477 CC denotes or
T25659 473-474 , denotes ,
T25658 470-473 NNP denotes Mut
T25657 469-470 : denotes -
T25656 465-469 NNP denotes I+II
T25655 454-464 NNP denotes Bal-env-κB
T25654 453-454 NNP denotes /
T25653 445-453 NNP denotes HIV-1Lai
T25652 443-444 , denotes ,
T25651 437-443 NNP denotes II-Mut
T25650 426-436 NNP denotes Bal-env-κB
T25649 425-426 NNP denotes /
T25648 417-425 NNP denotes HIV-1Lai
T25647 415-416 , denotes ,
T25646 410-415 NNP denotes I-Mut
T25645 399-409 NNP denotes Bal-env-κB
T25644 398-399 NN denotes /
T25643 390-398 JJ denotes HIV-1Lai
T25642 382-389 NNS denotes mutants
T25641 378-381 DT denotes the
T25640 375-377 CC denotes or
T25639 364-374 NN denotes Bal-env-WT
T25638 363-364 NN denotes /
T25637 355-363 JJ denotes HIV-1Lai
T25636 348-354 CD denotes TCID50
T25635 343-347 CD denotes 1000
T25634 338-342 IN denotes with
T25633 329-337 VBN denotes infected
T25632 324-328 VBD denotes were
T25631 317-323 NNS denotes donors
T25630 310-316 JJ denotes normal
T25629 305-309 CD denotes four
T25628 300-304 IN denotes from
T25627 295-299 NNP denotes PBMC
T25626 293-294 . denotes .
T25625 290-293 NNP denotes MTb
T25624 285-289 IN denotes with
T25623 272-284 NN denotes co-infection
T25622 266-271 IN denotes after
T25621 261-265 NNP denotes PBMC
T25620 255-260 JJ denotes human
T25619 252-254 IN denotes in
T25618 240-251 NN denotes replication
T25617 234-239 NN denotes virus
T25616 224-233 JJ denotes R5-tropic
T25615 215-223 VBZ denotes inhibits
T25614 211-214 NNP denotes LTR
T25613 209-210 NNP denotes B
T25612 201-208 NN denotes subtype
T25611 195-200 NNP denotes HIV-1
T25610 191-194 DT denotes the
T25609 188-190 IN denotes in
T25608 182-187 NNS denotes sites
T25607 174-181 JJ denotes binding
T25606 168-173 NNP denotes NFAT5
T25605 165-167 CC denotes or
T25604 159-164 NNP denotes NF-κB
T25603 155-158 DT denotes the
T25602 152-154 IN denotes of
T25601 141-151 NN denotes disruption
T25600 132-140 JJ denotes Specific
T25599 130-131 . denotes .
T25598 127-130 NNP denotes LTR
T25597 123-126 DT denotes the
T25596 120-122 TO denotes to
T25595 114-119 NNP denotes NF-κB
T25594 110-113 CC denotes and
T25593 104-109 NNP denotes NFAT5
T25592 101-103 IN denotes of
T25591 93-100 JJ denotes binding
T25590 90-92 IN denotes on
T25589 82-89 VBZ denotes depends
T25588 77-81 NNP denotes PBMC
T25587 74-76 IN denotes in
T25586 62-73 NN denotes replication
T25585 56-61 NN denotes HIV-1
T25584 44-55 JJ denotes MTb-induced
T25713 711-716 JJ denotes viral
T25712 706-710 VBP denotes show
T25711 695-705 NNPS denotes Histograms
T25710 693-694 -RRB- denotes )
T25709 692-693 $ denotes C
T25708 691-692 -LRB- denotes (
T25707 689-690 . denotes .
T25706 675-689 NN denotes post-infection
T25705 672-674 CD denotes 12
T25704 668-671 CC denotes and
T25703 666-667 CD denotes 7
T25702 664-665 , denotes ,
T25701 663-664 CD denotes 4
T25700 658-662 NNS denotes days
T25699 655-657 IN denotes at
T25698 646-654 VBN denotes measured
T25697 641-645 VBD denotes were
T25696 628-640 NNS denotes supernatants
T25695 620-627 NN denotes culture
T25694 617-619 IN denotes in
T25693 610-616 NNS denotes levels
T25692 606-609 NN denotes p24
T25691 600-605 JJ denotes Viral
T25690 598-599 . denotes .
T25689 597-598 -RRB- denotes )
T25688 590-597 NNS denotes bacilli
T25687 589-590 VBP denotes ∶
T25686 584-589 NNS denotes cells
T25685 582-583 CD denotes 1
T25684 581-582 NN denotes ∶
T25683 579-581 CD denotes 10
T25682 578-579 -LRB- denotes (
T25681 570-577 NNP denotes CDC1551
T25680 562-569 VB denotes isolate
T25679 558-561 NNP denotes MTb
T25678 553-557 IN denotes with
T25677 541-552 VBN denotes co-infected
R18639 T25584 T25586 amod MTb-induced,replication
R18640 T25585 T25586 compound HIV-1,replication
R18641 T25586 T25589 nsubj replication,depends
R18642 T25587 T25586 prep in,replication
R18643 T25588 T25587 pobj PBMC,in
R18644 T25589 T25589 ROOT depends,depends
R18645 T25590 T25589 prep on,depends
R18646 T25591 T25590 pobj binding,on
R18647 T25592 T25591 prep of,binding
R18648 T25593 T25592 pobj NFAT5,of
R18649 T25594 T25593 cc and,NFAT5
R18650 T25595 T25593 conj NF-κB,NFAT5
R18651 T25596 T25591 prep to,binding
R18652 T25597 T25598 det the,LTR
R18653 T25598 T25596 pobj LTR,to
R18654 T25599 T25589 punct .,depends
R18655 T25600 T25601 amod Specific,disruption
R18656 T25601 T25615 nsubj disruption,inhibits
R18657 T25602 T25601 prep of,disruption
R18658 T25603 T25604 det the,NF-κB
R18659 T25604 T25608 nmod NF-κB,sites
R18660 T25605 T25604 cc or,NF-κB
R18661 T25606 T25604 conj NFAT5,NF-κB
R18662 T25607 T25608 amod binding,sites
R18663 T25608 T25602 pobj sites,of
R18664 T25609 T25608 prep in,sites
R18665 T25610 T25614 det the,LTR
R18666 T25611 T25614 compound HIV-1,LTR
R18667 T25612 T25613 compound subtype,B
R18668 T25613 T25614 compound B,LTR
R18669 T25614 T25609 pobj LTR,in
R18670 T25615 T25615 ROOT inhibits,inhibits
R18671 T25616 T25618 amod R5-tropic,replication
R18672 T25617 T25618 compound virus,replication
R18673 T25618 T25615 dobj replication,inhibits
R18674 T25619 T25618 prep in,replication
R18675 T25620 T25621 compound human,PBMC
R18676 T25621 T25619 pobj PBMC,in
R18677 T25622 T25615 prep after,inhibits
R18678 T25623 T25622 pobj co-infection,after
R18679 T25624 T25623 prep with,co-infection
R18680 T25625 T25624 pobj MTb,with
R18681 T25626 T25615 punct .,inhibits
R18682 T25627 T25633 nsubjpass PBMC,infected
R18683 T25628 T25627 prep from,PBMC
R18684 T25629 T25631 nummod four,donors
R18685 T25630 T25631 amod normal,donors
R18686 T25631 T25628 pobj donors,from
R18687 T25632 T25633 auxpass were,infected
R18688 T25633 T25633 ROOT infected,infected
R18689 T25634 T25633 prep with,infected
R18690 T25635 T25639 nummod 1000,Bal-env-WT
R18691 T25636 T25639 nummod TCID50,Bal-env-WT
R18692 T25637 T25639 amod HIV-1Lai,Bal-env-WT
R18693 T25638 T25639 compound /,Bal-env-WT
R18694 T25639 T25634 pobj Bal-env-WT,with
R18695 T25640 T25639 cc or,Bal-env-WT
R18696 T25641 T25642 det the,mutants
R18697 T25642 T25670 nsubj mutants,left
R18698 T25643 T25644 compound HIV-1Lai,/
R18699 T25644 T25646 compound /,I-Mut
R18700 T25645 T25646 compound Bal-env-κB,I-Mut
R18701 T25646 T25642 appos I-Mut,mutants
R18702 T25647 T25646 punct ",",I-Mut
R18703 T25648 T25651 compound HIV-1Lai,II-Mut
R18704 T25649 T25651 compound /,II-Mut
R18705 T25650 T25651 compound Bal-env-κB,II-Mut
R18706 T25651 T25646 conj II-Mut,I-Mut
R18707 T25652 T25651 punct ",",II-Mut
R18708 T25653 T25656 compound HIV-1Lai,I+II
R18709 T25654 T25656 compound /,I+II
R18710 T25655 T25656 compound Bal-env-κB,I+II
R18711 T25656 T25658 compound I+II,Mut
R18712 T25657 T25658 punct -,Mut
R18713 T25658 T25651 conj Mut,II-Mut
R18714 T25659 T25658 punct ",",Mut
R18715 T25660 T25658 cc or,Mut
R18716 T25661 T25663 compound HIV-1Lai,Bal-env-N5-Mut
R18717 T25662 T25663 compound /,Bal-env-N5-Mut
R18718 T25663 T25658 conj Bal-env-N5-Mut,Mut
R18719 T25664 T25663 cc and,Bal-env-N5-Mut
R18720 T25665 T25663 conj either,Bal-env-N5-Mut
R18721 T25666 T25658 punct ;,Mut
R18722 T25667 T25668 punct (,A
R18723 T25668 T25658 conj A,Mut
R18724 T25669 T25658 punct ),Mut
R18725 T25670 T25633 advcl left,infected
R18726 T25671 T25670 oprd untreated,left
R18727 T25672 T25670 punct ",",left
R18728 T25673 T25670 cc or,left
R18729 T25674 T25677 punct (,co-infected
R18730 T25675 T25677 dep B,co-infected
R18731 T25676 T25677 punct ),co-infected
R18732 T25677 T25670 conj co-infected,left
R18733 T25678 T25677 prep with,co-infected
R18734 T25679 T25678 pobj MTb,with
R18735 T25680 T25670 conj isolate,left
R18736 T25681 T25680 dobj CDC1551,isolate
R18737 T25682 T25681 punct (,CDC1551
R18738 T25683 T25684 nummod 10,∶
R18739 T25684 T25680 npadvmod ∶,isolate
R18740 T25685 T25686 nummod 1,cells
R18741 T25686 T25684 appos cells,∶
R18742 T25687 T25688 compound ∶,bacilli
R18743 T25688 T25686 appos bacilli,cells
R18744 T25689 T25686 punct ),cells
R18745 T25690 T25670 punct .,left
R18746 T25691 T25693 amod Viral,levels
R18747 T25692 T25693 compound p24,levels
R18748 T25693 T25698 nsubjpass levels,measured
R18749 T25694 T25693 prep in,levels
R18750 T25695 T25694 pobj culture,in
R18751 T25696 T25698 nsubjpass supernatants,measured
R18752 T25697 T25698 auxpass were,measured
R18753 T25698 T25698 ROOT measured,measured
R18754 T25699 T25698 prep at,measured
R18755 T25700 T25699 pobj days,at
R18756 T25701 T25700 nummod 4,days
R18757 T25702 T25700 punct ",",days
R18758 T25703 T25700 conj 7,days
R18759 T25704 T25703 cc and,7
R18760 T25705 T25706 nummod 12,post-infection
R18761 T25706 T25703 conj post-infection,7
R18762 T25707 T25698 punct .,measured
R18763 T25708 T25709 punct (,C
R18764 T25709 T25709 ROOT C,C
R18765 T25710 T25709 punct ),C
R18766 T25711 T25712 nsubj Histograms,show
R18767 T25712 T25712 ROOT show,show
R18768 T25713 T25715 amod viral,levels
R18769 T25714 T25715 amod p24,levels
R18770 T25715 T25712 dobj levels,show
R18771 T25716 T25712 prep at,show
R18772 T25717 T25716 pobj day,at
R18773 T25718 T25717 nummod 12,day
R18774 T25719 T25712 prep in,show
R18775 T25720 T25722 det the,uninfected
R18776 T25721 T25722 compound MTb,uninfected
R18777 T25722 T25719 pobj uninfected,in
R18778 T25723 T25725 punct (,bars
R18779 T25724 T25725 amod grey,bars
R18780 T25725 T25722 appos bars,uninfected
R18781 T25726 T25725 punct ),bars
R18782 T25727 T25712 cc and,show
R18783 T25728 T25729 compound MTb,co-infected
R18784 T25729 T25712 conj co-infected,show
R18785 T25730 T25732 punct (,bars
R18786 T25731 T25732 amod black,bars
R18787 T25732 T25729 appos bars,co-infected
R18788 T25733 T25729 punct ),co-infected
R18789 T25734 T25735 compound PBMC,cultures
R18790 T25735 T25735 ROOT cultures,cultures
R18791 T25736 T25735 punct .,cultures
R18792 T25737 T25743 nsubjpass Replication,compared
R18793 T25738 T25737 prep of,Replication
R18794 T25739 T25741 det the,viruses
R18795 T25740 T25741 amod mutant,viruses
R18796 T25741 T25738 pobj viruses,of
R18797 T25742 T25743 auxpass was,compared
R18798 T25743 T25743 ROOT compared,compared
R18799 T25744 T25743 prep to,compared
R18800 T25745 T25747 amod wild-type,replication
R18801 T25746 T25747 compound virus,replication
R18802 T25747 T25744 pobj replication,to
R18803 T25748 T25747 prep under,replication
R18804 T25749 T25752 det the,conditions
R18805 T25750 T25752 amod same,conditions
R18806 T25751 T25752 amod experimental,conditions
R18807 T25752 T25748 pobj conditions,under
R18808 T25753 T25748 punct (,under
R18809 T25754 T25747 prep without,replication
R18810 T25755 T25754 cc and,without
R18811 T25756 T25754 conj with,without
R18812 T25757 T25758 compound MTb,co-infection
R18813 T25758 T25756 pobj co-infection,with
R18814 T25759 T25758 punct ",",co-infection
R18815 T25760 T25743 advmod respectively,compared
R18816 T25761 T25743 punct ),compared
R18817 T25762 T25743 punct .,compared
R18818 T25763 T25765 punct *,p
R18819 T25764 T25765 punct ",",p
R18820 T25765 T25765 ROOT p,p
R18821 T25766 T25765 advmod <,p
R18822 T25767 T25766 nummod 0.05,<
R18823 T25768 T25776 punct ;,compared
R18824 T25769 T25776 punct **,compared
R18825 T25770 T25776 punct ",",compared
R18826 T25771 T25772 compound p,<
R18827 T25772 T25773 compound <,0.01
R18828 T25773 T25776 nsubjpass 0.01,compared
R18829 T25774 T25776 punct ",",compared
R18830 T25775 T25776 mark as,compared
R18831 T25776 T25765 prep compared,p
R18832 T25777 T25776 prep to,compared
R18833 T25778 T25780 compound HIV-1Lai,Bal-Env-WT
R18834 T25779 T25780 compound /,Bal-Env-WT
R18835 T25780 T25777 pobj Bal-Env-WT,to
R18836 T25781 T25776 punct .,compared

bionlp-st-ge-2016-test-tees

Id Subject Object Predicate Lexical cue
T25555 1043-1045 Protein denotes WT
T25554 1039-1042 Protein denotes Env
T25553 717-720 Protein denotes p24
T25552 606-609 Protein denotes p24
T25551 498-501 Protein denotes Mut
T25550 495-497 Protein denotes N5
T25549 491-494 Protein denotes env
T25548 470-473 Protein denotes Mut
T25547 462-469 Protein denotes κB I+II
T25546 458-461 Protein denotes env
T25545 440-443 Protein denotes Mut
T25544 434-439 Protein denotes κB II
T25543 430-433 Protein denotes env
T25542 412-415 Protein denotes Mut
T25541 407-411 Protein denotes κB I
T25540 403-406 Protein denotes env
T25539 372-374 Protein denotes WT
T25538 368-371 Protein denotes env
T25537 141-151 Negative_regulation denotes disruption
T25536 141-151 Negative_regulation denotes disruption
T25535 141-151 Negative_regulation denotes disruption
T25534 195-214 Protein denotes HIV-1 subtype B LTR
T25533 168-187 Protein denotes NFAT5 binding sites
T25532 159-164 Protein denotes NF-κB
T25531 93-100 Binding denotes binding
T25530 93-100 Binding denotes binding
T25529 114-119 Protein denotes NF-κB
T25528 104-109 Protein denotes NFAT5
R18629 T25528 T25530 themeOf NFAT5,binding
R18630 T25529 T25531 themeOf NF-κB,binding
R18631 T25532 T25535 themeOf NF-κB,disruption
R18632 T25533 T25536 themeOf NFAT5 binding sites,disruption
R18633 T25534 T25537 themeOf HIV-1 subtype B LTR,disruption

testone

Id Subject Object Predicate Lexical cue
T25251 606-609 Protein denotes p24
T25250 491-494 Protein denotes env
T25249 458-461 Protein denotes env
T25248 430-433 Protein denotes env
T25247 403-406 Protein denotes env
T25246 368-371 Protein denotes env
T25245 104-109 Protein denotes NFAT5
T25253 93-100 Binding denotes binding
T25252 717-720 Protein denotes p24
R18446 T25245 T25253 themeOf NFAT5,binding

test3

Id Subject Object Predicate Lexical cue
T25270 717-720 Protein denotes p24
T25269 606-609 Protein denotes p24
T25268 491-494 Protein denotes env
T25267 458-461 Protein denotes env
T25266 430-433 Protein denotes env
T25265 403-406 Protein denotes env
T25264 368-371 Protein denotes env
T25263 104-109 Protein denotes NFAT5
T25262 93-100 Binding denotes binding
T25261 717-720 Protein denotes p24
T25260 606-609 Protein denotes p24
T25259 491-494 Protein denotes env
T25258 458-461 Protein denotes env
T25257 430-433 Protein denotes env
T25256 403-406 Protein denotes env
T25255 368-371 Protein denotes env
T25254 104-109 Protein denotes NFAT5
R18447 T25263 T25262 themeOf NFAT5,binding