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PMC:3312845 / 4619-4757 JSONTXT

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pmc-enju-pas

Id Subject Object Predicate Lexical cue
T1752 123-134 JJ denotes endothelial
T1751 119-122 CC denotes and
T1750 111-118 NN denotes neurons
T1749 109-110 -COMMA- denotes ,
T1748 105-109 NN denotes glia
T1747 102-104 IN denotes in
T1746 90-101 VB denotes upregulated
T1745 82-89 RB denotes rapidly
T1744 79-81 VB denotes is
T1743 75-78 CC denotes and
T1742 69-74 NN denotes brain
T1741 62-68 JJ denotes normal
T1740 59-61 IN denotes in
T1739 52-58 NN denotes levels
T1738 48-51 JJ denotes low
T1737 45-47 IN denotes at
T1736 35-44 VB denotes expressed
T1735 32-34 VB denotes is
T1734 26-31 NN denotes TNF-α
T1733 18-24 NN denotes system
T1732 11-17 JJ denotes immune
T1731 7-10 DT denotes the
T1730 4-6 IN denotes in
R1166 T1733 T1730 arg2Of system,in
R1167 T1733 T1731 arg1Of system,the
R1168 T1733 T1732 arg1Of system,immune
R1169 T1734 T1735 arg1Of TNF-α,is
R1170 T1734 T1736 arg2Of TNF-α,expressed
R1171 T1734 T1744 arg1Of TNF-α,is
R1172 T1734 T1746 arg2Of TNF-α,upregulated
R1173 T1736 T1735 arg2Of expressed,is
R1174 T1736 T1737 arg1Of expressed,at
R1175 T1736 T1740 arg1Of expressed,in
R1176 T1736 T1743 arg1Of expressed,and
R1177 T1739 T1737 arg2Of levels,at
R1178 T1739 T1738 arg1Of levels,low
R1179 T1742 T1740 arg2Of brain,in
R1180 T1742 T1741 arg1Of brain,normal
R1181 T1746 T1743 arg2Of upregulated,and
R1182 T1746 T1744 arg2Of upregulated,is
R1183 T1746 T1745 arg1Of upregulated,rapidly
R1184 T1746 T1747 arg1Of upregulated,in
R1185 T1748 T1749 arg1Of glia,","
R1186 T1749 T1751 arg1Of ",",and
R1187 T1750 T1749 arg2Of neurons,","
R1188 T1751 T1747 arg2Of and,in

bionlp-st-ge-2016-test-proteins

Id Subject Object Predicate Lexical cue
T1198 26-31 Protein denotes TNF-α

bionlp-st-ge-2016-uniprot

Id Subject Object Predicate Lexical cue
T1949 26-29 http://www.uniprot.org/uniprot/P01375 denotes TNF
T1943 26-31 http://www.uniprot.org/uniprot/P01375 denotes TNF-α

UBERON-AE

Id Subject Object Predicate Lexical cue
T1139 11-24 http://purl.obolibrary.org/obo/UBERON_0002405 denotes immune system
T1120 69-74 http://purl.obolibrary.org/obo/UBERON_0000955 denotes brain

simple1

Id Subject Object Predicate Lexical cue
T1252 26-31 Protein denotes TNF-α

BioNLP16_DUT

Id Subject Object Predicate Lexical cue
T2854 35-44 Gene_expression denotes expressed
T2853 90-101 Positive_regulation denotes upregulated
T2833 26-31 Protein denotes TNF-α
R2142 T2833 T2853 themeOf TNF-α,upregulated
R2143 T2833 T2854 themeOf TNF-α,expressed

BioNLP16_Messiy

Id Subject Object Predicate Lexical cue
T2686 90-101 Positive_regulation denotes upregulated
T2685 35-44 Gene_expression denotes expressed
T2665 26-31 Protein denotes TNF-α
R2028 T2665 T2686 themeOf TNF-α,upregulated
R2029 T2665 T2685 themeOf TNF-α,expressed

DLUT931

Id Subject Object Predicate Lexical cue
T2717 90-101 Positive_regulation denotes upregulated
T2716 35-44 Gene_expression denotes expressed
T2696 26-31 Protein denotes TNF-α
R2062 T2696 T2716 themeOf TNF-α,expressed
R2063 T2696 T2717 themeOf TNF-α,upregulated
R2077 T2716 T2717 themeOf expressed,upregulated

bionlp-st-ge-2016-test-ihmc

Id Subject Object Predicate Lexical cue
T2879 26-31 Protein denotes TNF-α
T2868 111-118 Entity denotes neurons

bionlp-st-ge-2016-spacy-parsed

Id Subject Object Predicate Lexical cue
T2445 11-17 JJ denotes immune
T2444 7-10 DT denotes the
T2443 4-6 IN denotes in
T2466 123-134 JJ denotes endothelial
T2465 119-122 CC denotes and
T2464 111-118 NNS denotes neurons
T2463 109-110 , denotes ,
T2462 105-109 NN denotes glia
T2461 102-104 IN denotes in
T2460 90-101 VBN denotes upregulated
T2459 82-89 RB denotes rapidly
T2458 79-81 VBZ denotes is
T2457 75-78 CC denotes and
T2456 69-74 NN denotes brain
T2455 62-68 JJ denotes normal
T2454 59-61 IN denotes in
T2453 52-58 NNS denotes levels
T2452 48-51 JJ denotes low
T2451 45-47 IN denotes at
T2450 35-44 VBN denotes expressed
T2449 32-34 VBZ denotes is
T2448 26-31 NN denotes TNF-α
T2447 24-25 . denotes .
T2446 18-24 NN denotes system
R1850 T2444 T2446 det the,system
R1851 T2445 T2446 amod immune,system
R1852 T2446 T2443 pobj system,in
R1855 T2448 T2450 nsubjpass TNF-α,expressed
R1857 T2449 T2450 auxpass is,expressed
R1858 T2450 T2450 ROOT expressed,expressed
R1860 T2451 T2450 prep at,expressed
R1861 T2452 T2453 amod low,levels
R1862 T2453 T2451 pobj levels,at
R1864 T2454 T2453 prep in,levels
R1865 T2455 T2456 amod normal,brain
R1867 T2456 T2454 pobj brain,in
R1868 T2457 T2450 cc and,expressed
R1869 T2458 T2460 auxpass is,upregulated
R1870 T2459 T2460 advmod rapidly,upregulated
R1871 T2460 T2450 conj upregulated,expressed
R1872 T2461 T2460 prep in,upregulated
R1873 T2462 T2461 pobj glia,in
R1875 T2463 T2462 punct ",",glia
R1876 T2464 T2462 conj neurons,glia
R1877 T2465 T2464 cc and,neurons

bionlp-st-ge-2016-test-tees

Id Subject Object Predicate Lexical cue
T2733 90-101 Positive_regulation denotes upregulated
T2732 90-101 Positive_regulation denotes upregulated
T2731 35-44 Gene_expression denotes expressed
T2730 26-31 Protein denotes TNF-α
R2096 T2730 T2731 themeOf TNF-α,expressed
R2097 T2730 T2732 themeOf TNF-α,upregulated
R2101 T2731 T2733 themeOf expressed,upregulated

testone

Id Subject Object Predicate Lexical cue
T1054 35-44 Gene_expression denotes expressed
T1030 26-31 Protein denotes TNF-α
R662 T1030 T1054 themeOf TNF-α,expressed

test3

Id Subject Object Predicate Lexical cue
T1091 90-101 Positive_regulation denotes upregulated
T1090 35-44 Gene_expression denotes expressed
T1089 26-31 Protein denotes TNF-α
T1065 26-31 Protein denotes TNF-α
R679 T1089 T1091 themeOf TNF-α,upregulated
R680 T1089 T1090 themeOf TNF-α,expressed
R681 T1090 T1091 themeOf expressed,upregulated