PMC:3312845 / 4619-4757 JSONTXT

Annnotations TAB JSON ListView MergeView

{"target":"https://pubannotation.org/docs/sourcedb/PMC/sourceid/3312845","sourcedb":"PMC","sourceid":"3312845","source_url":"http://www.ncbi.nlm.nih.gov/pmc/3312845","text":"lls in the immune system. TNF-α is expressed at low levels in normal brain and is rapidly upregulated in glia, neurons and endothelial cel","tracks":[{"project":"pmc-enju-pas","denotations":[{"id":"T1752","span":{"begin":123,"end":134},"obj":"JJ"},{"id":"T1751","span":{"begin":119,"end":122},"obj":"CC"},{"id":"T1750","span":{"begin":111,"end":118},"obj":"NN"},{"id":"T1749","span":{"begin":109,"end":110},"obj":"-COMMA-"},{"id":"T1748","span":{"begin":105,"end":109},"obj":"NN"},{"id":"T1747","span":{"begin":102,"end":104},"obj":"IN"},{"id":"T1746","span":{"begin":90,"end":101},"obj":"VB"},{"id":"T1745","span":{"begin":82,"end":89},"obj":"RB"},{"id":"T1744","span":{"begin":79,"end":81},"obj":"VB"},{"id":"T1743","span":{"begin":75,"end":78},"obj":"CC"},{"id":"T1742","span":{"begin":69,"end":74},"obj":"NN"},{"id":"T1741","span":{"begin":62,"end":68},"obj":"JJ"},{"id":"T1740","span":{"begin":59,"end":61},"obj":"IN"},{"id":"T1739","span":{"begin":52,"end":58},"obj":"NN"},{"id":"T1738","span":{"begin":48,"end":51},"obj":"JJ"},{"id":"T1737","span":{"begin":45,"end":47},"obj":"IN"},{"id":"T1736","span":{"begin":35,"end":44},"obj":"VB"},{"id":"T1735","span":{"begin":32,"end":34},"obj":"VB"},{"id":"T1734","span":{"begin":26,"end":31},"obj":"NN"},{"id":"T1733","span":{"begin":18,"end":24},"obj":"NN"},{"id":"T1732","span":{"begin":11,"end":17},"obj":"JJ"},{"id":"T1731","span":{"begin":7,"end":10},"obj":"DT"},{"id":"T1730","span":{"begin":4,"end":6},"obj":"IN"}],"relations":[{"id":"R1166","pred":"arg2Of","subj":"T1733","obj":"T1730"},{"id":"R1167","pred":"arg1Of","subj":"T1733","obj":"T1731"},{"id":"R1168","pred":"arg1Of","subj":"T1733","obj":"T1732"},{"id":"R1169","pred":"arg1Of","subj":"T1734","obj":"T1735"},{"id":"R1170","pred":"arg2Of","subj":"T1734","obj":"T1736"},{"id":"R1171","pred":"arg1Of","subj":"T1734","obj":"T1744"},{"id":"R1172","pred":"arg2Of","subj":"T1734","obj":"T1746"},{"id":"R1173","pred":"arg2Of","subj":"T1736","obj":"T1735"},{"id":"R1174","pred":"arg1Of","subj":"T1736","obj":"T1737"},{"id":"R1175","pred":"arg1Of","subj":"T1736","obj":"T1740"},{"id":"R1176","pred":"arg1Of","subj":"T1736","obj":"T1743"},{"id":"R1177","pred":"arg2Of","subj":"T1739","obj":"T1737"},{"id":"R1178","pred":"arg1Of","subj":"T1739","obj":"T1738"},{"id":"R1179","pred":"arg2Of","subj":"T1742","obj":"T1740"},{"id":"R1180","pred":"arg1Of","subj":"T1742","obj":"T1741"},{"id":"R1181","pred":"arg2Of","subj":"T1746","obj":"T1743"},{"id":"R1182","pred":"arg2Of","subj":"T1746","obj":"T1744"},{"id":"R1183","pred":"arg1Of","subj":"T1746","obj":"T1745"},{"id":"R1184","pred":"arg1Of","subj":"T1746","obj":"T1747"},{"id":"R1185","pred":"arg1Of","subj":"T1748","obj":"T1749"},{"id":"R1186","pred":"arg1Of","subj":"T1749","obj":"T1751"},{"id":"R1187","pred":"arg2Of","subj":"T1750","obj":"T1749"},{"id":"R1188","pred":"arg2Of","subj":"T1751","obj":"T1747"}],"namespaces":[{"prefix":"_base","uri":"http://kmcs.nii.ac.jp/enju/"}],"attributes":[{"subj":"T1752","pred":"source","obj":"pmc-enju-pas"},{"subj":"T1751","pred":"source","obj":"pmc-enju-pas"},{"subj":"T1750","pred":"source","obj":"pmc-enju-pas"},{"subj":"T1749","pred":"source","obj":"pmc-enju-pas"},{"subj":"T1748","pred":"source","obj":"pmc-enju-pas"},{"subj":"T1747","pred":"source","obj":"pmc-enju-pas"},{"subj":"T1746","pred":"source","obj":"pmc-enju-pas"},{"subj":"T1745","pred":"source","obj":"pmc-enju-pas"},{"subj":"T1744","pred":"source","obj":"pmc-enju-pas"},{"subj":"T1743","pred":"source","obj":"pmc-enju-pas"},{"subj":"T1742","pred":"source","obj":"pmc-enju-pas"},{"subj":"T1741","pred":"source","obj":"pmc-enju-pas"},{"subj":"T1740","pred":"source","obj":"pmc-enju-pas"},{"subj":"T1739","pred":"source","obj":"pmc-enju-pas"},{"subj":"T1738","pred":"source","obj":"pmc-enju-pas"},{"subj":"T1737","pred":"source","obj":"pmc-enju-pas"},{"subj":"T1736","pred":"source","obj":"pmc-enju-pas"},{"subj":"T1735","pred":"source","obj":"pmc-enju-pas"},{"subj":"T1734","pred":"source","obj":"pmc-enju-pas"},{"subj":"T1733","pred":"source","obj":"pmc-enju-pas"},{"subj":"T1732","pred":"source","obj":"pmc-enju-pas"},{"subj":"T1731","pred":"source","obj":"pmc-enju-pas"},{"subj":"T1730","pred":"source","obj":"pmc-enju-pas"}]},{"project":"bionlp-st-ge-2016-test-proteins","denotations":[{"id":"T1198","span":{"begin":26,"end":31},"obj":"Protein"}],"namespaces":[{"prefix":"_base","uri":"http://bionlp.dbcls.jp/ontology/ge.owl#"}],"attributes":[{"subj":"T1198","pred":"source","obj":"bionlp-st-ge-2016-test-proteins"}]},{"project":"bionlp-st-ge-2016-uniprot","denotations":[{"id":"T1949","span":{"begin":26,"end":29},"obj":"http://www.uniprot.org/uniprot/P01375"},{"id":"T1943","span":{"begin":26,"end":31},"obj":"http://www.uniprot.org/uniprot/P01375"}],"namespaces":[{"prefix":"_base","uri":"http://www.uniprot.org/uniprot/"}],"attributes":[{"subj":"T1949","pred":"source","obj":"bionlp-st-ge-2016-uniprot"},{"subj":"T1943","pred":"source","obj":"bionlp-st-ge-2016-uniprot"}]},{"project":"UBERON-AE","denotations":[{"id":"T1139","span":{"begin":11,"end":24},"obj":"http://purl.obolibrary.org/obo/UBERON_0002405"},{"id":"T1120","span":{"begin":69,"end":74},"obj":"http://purl.obolibrary.org/obo/UBERON_0000955"}],"attributes":[{"subj":"T1139","pred":"source","obj":"UBERON-AE"},{"subj":"T1120","pred":"source","obj":"UBERON-AE"}]},{"project":"simple1","denotations":[{"id":"T1252","span":{"begin":26,"end":31},"obj":"Protein"}],"attributes":[{"subj":"T1252","pred":"source","obj":"simple1"}]},{"project":"BioNLP16_DUT","denotations":[{"id":"T2854","span":{"begin":35,"end":44},"obj":"Gene_expression"},{"id":"T2853","span":{"begin":90,"end":101},"obj":"Positive_regulation"},{"id":"T2833","span":{"begin":26,"end":31},"obj":"Protein"}],"relations":[{"id":"R2142","pred":"themeOf","subj":"T2833","obj":"T2853"},{"id":"R2143","pred":"themeOf","subj":"T2833","obj":"T2854"}],"attributes":[{"subj":"T2854","pred":"source","obj":"BioNLP16_DUT"},{"subj":"T2853","pred":"source","obj":"BioNLP16_DUT"},{"subj":"T2833","pred":"source","obj":"BioNLP16_DUT"}]},{"project":"BioNLP16_Messiy","denotations":[{"id":"T2686","span":{"begin":90,"end":101},"obj":"Positive_regulation"},{"id":"T2685","span":{"begin":35,"end":44},"obj":"Gene_expression"},{"id":"T2665","span":{"begin":26,"end":31},"obj":"Protein"}],"relations":[{"id":"R2028","pred":"themeOf","subj":"T2665","obj":"T2686"},{"id":"R2029","pred":"themeOf","subj":"T2665","obj":"T2685"}],"attributes":[{"subj":"T2686","pred":"source","obj":"BioNLP16_Messiy"},{"subj":"T2685","pred":"source","obj":"BioNLP16_Messiy"},{"subj":"T2665","pred":"source","obj":"BioNLP16_Messiy"}]},{"project":"DLUT931","denotations":[{"id":"T2717","span":{"begin":90,"end":101},"obj":"Positive_regulation"},{"id":"T2716","span":{"begin":35,"end":44},"obj":"Gene_expression"},{"id":"T2696","span":{"begin":26,"end":31},"obj":"Protein"}],"relations":[{"id":"R2062","pred":"themeOf","subj":"T2696","obj":"T2716"},{"id":"R2063","pred":"themeOf","subj":"T2696","obj":"T2717"},{"id":"R2077","pred":"themeOf","subj":"T2716","obj":"T2717"}],"attributes":[{"subj":"T2717","pred":"source","obj":"DLUT931"},{"subj":"T2716","pred":"source","obj":"DLUT931"},{"subj":"T2696","pred":"source","obj":"DLUT931"}]},{"project":"bionlp-st-ge-2016-test-ihmc","denotations":[{"id":"T2879","span":{"begin":26,"end":31},"obj":"Protein"},{"id":"T2868","span":{"begin":111,"end":118},"obj":"Entity"}],"attributes":[{"subj":"T2879","pred":"source","obj":"bionlp-st-ge-2016-test-ihmc"},{"subj":"T2868","pred":"source","obj":"bionlp-st-ge-2016-test-ihmc"}]},{"project":"bionlp-st-ge-2016-spacy-parsed","denotations":[{"id":"T2445","span":{"begin":11,"end":17},"obj":"JJ"},{"id":"T2444","span":{"begin":7,"end":10},"obj":"DT"},{"id":"T2443","span":{"begin":4,"end":6},"obj":"IN"},{"id":"T2466","span":{"begin":123,"end":134},"obj":"JJ"},{"id":"T2465","span":{"begin":119,"end":122},"obj":"CC"},{"id":"T2464","span":{"begin":111,"end":118},"obj":"NNS"},{"id":"T2463","span":{"begin":109,"end":110},"obj":","},{"id":"T2462","span":{"begin":105,"end":109},"obj":"NN"},{"id":"T2461","span":{"begin":102,"end":104},"obj":"IN"},{"id":"T2460","span":{"begin":90,"end":101},"obj":"VBN"},{"id":"T2459","span":{"begin":82,"end":89},"obj":"RB"},{"id":"T2458","span":{"begin":79,"end":81},"obj":"VBZ"},{"id":"T2457","span":{"begin":75,"end":78},"obj":"CC"},{"id":"T2456","span":{"begin":69,"end":74},"obj":"NN"},{"id":"T2455","span":{"begin":62,"end":68},"obj":"JJ"},{"id":"T2454","span":{"begin":59,"end":61},"obj":"IN"},{"id":"T2453","span":{"begin":52,"end":58},"obj":"NNS"},{"id":"T2452","span":{"begin":48,"end":51},"obj":"JJ"},{"id":"T2451","span":{"begin":45,"end":47},"obj":"IN"},{"id":"T2450","span":{"begin":35,"end":44},"obj":"VBN"},{"id":"T2449","span":{"begin":32,"end":34},"obj":"VBZ"},{"id":"T2448","span":{"begin":26,"end":31},"obj":"NN"},{"id":"T2447","span":{"begin":24,"end":25},"obj":"."},{"id":"T2446","span":{"begin":18,"end":24},"obj":"NN"}],"relations":[{"id":"R1850","pred":"det","subj":"T2444","obj":"T2446"},{"id":"R1851","pred":"amod","subj":"T2445","obj":"T2446"},{"id":"R1852","pred":"pobj","subj":"T2446","obj":"T2443"},{"id":"R1855","pred":"nsubjpass","subj":"T2448","obj":"T2450"},{"id":"R1857","pred":"auxpass","subj":"T2449","obj":"T2450"},{"id":"R1858","pred":"ROOT","subj":"T2450","obj":"T2450"},{"id":"R1860","pred":"prep","subj":"T2451","obj":"T2450"},{"id":"R1861","pred":"amod","subj":"T2452","obj":"T2453"},{"id":"R1862","pred":"pobj","subj":"T2453","obj":"T2451"},{"id":"R1864","pred":"prep","subj":"T2454","obj":"T2453"},{"id":"R1865","pred":"amod","subj":"T2455","obj":"T2456"},{"id":"R1867","pred":"pobj","subj":"T2456","obj":"T2454"},{"id":"R1868","pred":"cc","subj":"T2457","obj":"T2450"},{"id":"R1869","pred":"auxpass","subj":"T2458","obj":"T2460"},{"id":"R1870","pred":"advmod","subj":"T2459","obj":"T2460"},{"id":"R1871","pred":"conj","subj":"T2460","obj":"T2450"},{"id":"R1872","pred":"prep","subj":"T2461","obj":"T2460"},{"id":"R1873","pred":"pobj","subj":"T2462","obj":"T2461"},{"id":"R1875","pred":"punct","subj":"T2463","obj":"T2462"},{"id":"R1876","pred":"conj","subj":"T2464","obj":"T2462"},{"id":"R1877","pred":"cc","subj":"T2465","obj":"T2464"}],"attributes":[{"subj":"T2445","pred":"source","obj":"bionlp-st-ge-2016-spacy-parsed"},{"subj":"T2444","pred":"source","obj":"bionlp-st-ge-2016-spacy-parsed"},{"subj":"T2443","pred":"source","obj":"bionlp-st-ge-2016-spacy-parsed"},{"subj":"T2466","pred":"source","obj":"bionlp-st-ge-2016-spacy-parsed"},{"subj":"T2465","pred":"source","obj":"bionlp-st-ge-2016-spacy-parsed"},{"subj":"T2464","pred":"source","obj":"bionlp-st-ge-2016-spacy-parsed"},{"subj":"T2463","pred":"source","obj":"bionlp-st-ge-2016-spacy-parsed"},{"subj":"T2462","pred":"source","obj":"bionlp-st-ge-2016-spacy-parsed"},{"subj":"T2461","pred":"source","obj":"bionlp-st-ge-2016-spacy-parsed"},{"subj":"T2460","pred":"source","obj":"bionlp-st-ge-2016-spacy-parsed"},{"subj":"T2459","pred":"source","obj":"bionlp-st-ge-2016-spacy-parsed"},{"subj":"T2458","pred":"source","obj":"bionlp-st-ge-2016-spacy-parsed"},{"subj":"T2457","pred":"source","obj":"bionlp-st-ge-2016-spacy-parsed"},{"subj":"T2456","pred":"source","obj":"bionlp-st-ge-2016-spacy-parsed"},{"subj":"T2455","pred":"source","obj":"bionlp-st-ge-2016-spacy-parsed"},{"subj":"T2454","pred":"source","obj":"bionlp-st-ge-2016-spacy-parsed"},{"subj":"T2453","pred":"source","obj":"bionlp-st-ge-2016-spacy-parsed"},{"subj":"T2452","pred":"source","obj":"bionlp-st-ge-2016-spacy-parsed"},{"subj":"T2451","pred":"source","obj":"bionlp-st-ge-2016-spacy-parsed"},{"subj":"T2450","pred":"source","obj":"bionlp-st-ge-2016-spacy-parsed"},{"subj":"T2449","pred":"source","obj":"bionlp-st-ge-2016-spacy-parsed"},{"subj":"T2448","pred":"source","obj":"bionlp-st-ge-2016-spacy-parsed"},{"subj":"T2447","pred":"source","obj":"bionlp-st-ge-2016-spacy-parsed"},{"subj":"T2446","pred":"source","obj":"bionlp-st-ge-2016-spacy-parsed"}]},{"project":"bionlp-st-ge-2016-test-tees","denotations":[{"id":"T2733","span":{"begin":90,"end":101},"obj":"Positive_regulation"},{"id":"T2732","span":{"begin":90,"end":101},"obj":"Positive_regulation"},{"id":"T2731","span":{"begin":35,"end":44},"obj":"Gene_expression"},{"id":"T2730","span":{"begin":26,"end":31},"obj":"Protein"}],"relations":[{"id":"R2096","pred":"themeOf","subj":"T2730","obj":"T2731"},{"id":"R2097","pred":"themeOf","subj":"T2730","obj":"T2732"},{"id":"R2101","pred":"themeOf","subj":"T2731","obj":"T2733"}],"attributes":[{"subj":"T2733","pred":"source","obj":"bionlp-st-ge-2016-test-tees"},{"subj":"T2732","pred":"source","obj":"bionlp-st-ge-2016-test-tees"},{"subj":"T2731","pred":"source","obj":"bionlp-st-ge-2016-test-tees"},{"subj":"T2730","pred":"source","obj":"bionlp-st-ge-2016-test-tees"}]},{"project":"testone","denotations":[{"id":"T1054","span":{"begin":35,"end":44},"obj":"Gene_expression"},{"id":"T1030","span":{"begin":26,"end":31},"obj":"Protein"}],"relations":[{"id":"R662","pred":"themeOf","subj":"T1030","obj":"T1054"}],"attributes":[{"subj":"T1054","pred":"source","obj":"testone"},{"subj":"T1030","pred":"source","obj":"testone"}]},{"project":"test3","denotations":[{"id":"T1091","span":{"begin":90,"end":101},"obj":"Positive_regulation"},{"id":"T1090","span":{"begin":35,"end":44},"obj":"Gene_expression"},{"id":"T1089","span":{"begin":26,"end":31},"obj":"Protein"},{"id":"T1065","span":{"begin":26,"end":31},"obj":"Protein"}],"relations":[{"id":"R679","pred":"themeOf","subj":"T1089","obj":"T1091"},{"id":"R680","pred":"themeOf","subj":"T1089","obj":"T1090"},{"id":"R681","pred":"themeOf","subj":"T1090","obj":"T1091"}],"attributes":[{"subj":"T1091","pred":"source","obj":"test3"},{"subj":"T1090","pred":"source","obj":"test3"},{"subj":"T1089","pred":"source","obj":"test3"},{"subj":"T1065","pred":"source","obj":"test3"}]}],"config":{"attribute types":[{"pred":"source","value type":"selection","values":[{"id":"pmc-enju-pas","color":"#ec93a6","default":true},{"id":"bionlp-st-ge-2016-test-proteins","color":"#93c0ec"},{"id":"bionlp-st-ge-2016-uniprot","color":"#daec93"},{"id":"UBERON-AE","color":"#e393ec"},{"id":"simple1","color":"#93ecc9"},{"id":"BioNLP16_DUT","color":"#ecaf93"},{"id":"BioNLP16_Messiy","color":"#9593ec"},{"id":"DLUT931","color":"#aaec93"},{"id":"bionlp-st-ge-2016-test-ihmc","color":"#ec93c4"},{"id":"bionlp-st-ge-2016-spacy-parsed","color":"#93deec"},{"id":"bionlp-st-ge-2016-test-tees","color":"#ecdf93"},{"id":"testone","color":"#c593ec"},{"id":"test3","color":"#93ecab"}]}]}}