PMC:3279418 / 4239-4420
Annnotations
pmc-enju-pas
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bionlp-st-ge-2016-spacy-parsed
{"project":"bionlp-st-ge-2016-spacy-parsed","denotations":[{"id":"T1061","span":{"begin":0,"end":3},"obj":"DT"},{"id":"T1062","span":{"begin":4,"end":11},"obj":"NNS"},{"id":"T1063","span":{"begin":12,"end":20},"obj":"VBD"},{"id":"T1064","span":{"begin":21,"end":25},"obj":"RB"},{"id":"T1065","span":{"begin":26,"end":31},"obj":"VBN"},{"id":"T1066","span":{"begin":32,"end":36},"obj":"IN"},{"id":"T1067","span":{"begin":37,"end":41},"obj":"NN"},{"id":"T1068","span":{"begin":42,"end":44},"obj":"IN"},{"id":"T1069","span":{"begin":45,"end":52},"obj":"NNP"},{"id":"T1070","span":{"begin":53,"end":60},"obj":"NN"},{"id":"T1071","span":{"begin":61,"end":63},"obj":"IN"},{"id":"T1072","span":{"begin":64,"end":68},"obj":"NNP"},{"id":"T1073","span":{"begin":69,"end":75},"obj":"VBD"},{"id":"T1074","span":{"begin":76,"end":85},"obj":"JJ"},{"id":"T1075","span":{"begin":86,"end":96},"obj":"NN"},{"id":"T1076","span":{"begin":97,"end":99},"obj":"IN"},{"id":"T1077","span":{"begin":100,"end":116},"obj":"JJ"},{"id":"T1078","span":{"begin":117,"end":126},"obj":"NNS"},{"id":"T1079","span":{"begin":127,"end":130},"obj":"CC"},{"id":"T1080","span":{"begin":131,"end":139},"obj":"VBN"},{"id":"T1081","span":{"begin":140,"end":145},"obj":"JJ"},{"id":"T1082","span":{"begin":146,"end":156},"obj":"NN"},{"id":"T1083","span":{"begin":157,"end":161},"obj":"IN"},{"id":"T1084","span":{"begin":162,"end":168},"obj":"NN"},{"id":"T1085","span":{"begin":169,"end":180},"obj":"NN"},{"id":"T1086","span":{"begin":180,"end":181},"obj":"."}],"relations":[{"id":"R823","pred":"det","subj":"T1061","obj":"T1062"},{"id":"R824","pred":"nsubj","subj":"T1062","obj":"T1065"},{"id":"R825","pred":"acl","subj":"T1063","obj":"T1062"},{"id":"R826","pred":"advmod","subj":"T1064","obj":"T1063"},{"id":"R827","pred":"ROOT","subj":"T1065","obj":"T1065"},{"id":"R828","pred":"mark","subj":"T1066","obj":"T1073"},{"id":"R829","pred":"nsubj","subj":"T1067","obj":"T1073"},{"id":"R830","pred":"prep","subj":"T1068","obj":"T1067"},{"id":"R831","pred":"compound","subj":"T1069","obj":"T1070"},{"id":"R832","pred":"pobj","subj":"T1070","obj":"T1068"},{"id":"R833","pred":"prep","subj":"T1071","obj":"T1067"},{"id":"R834","pred":"pobj","subj":"T1072","obj":"T1071"},{"id":"R835","pred":"ccomp","subj":"T1073","obj":"T1065"},{"id":"R836","pred":"amod","subj":"T1074","obj":"T1075"},{"id":"R837","pred":"dobj","subj":"T1075","obj":"T1073"},{"id":"R838","pred":"prep","subj":"T1076","obj":"T1075"},{"id":"R839","pred":"amod","subj":"T1077","obj":"T1078"},{"id":"R840","pred":"pobj","subj":"T1078","obj":"T1076"},{"id":"R841","pred":"cc","subj":"T1079","obj":"T1075"},{"id":"R842","pred":"amod","subj":"T1080","obj":"T1082"},{"id":"R843","pred":"amod","subj":"T1081","obj":"T1082"},{"id":"R844","pred":"conj","subj":"T1082","obj":"T1075"},{"id":"R845","pred":"prep","subj":"T1083","obj":"T1082"},{"id":"R846","pred":"amod","subj":"T1084","obj":"T1085"},{"id":"R847","pred":"pobj","subj":"T1085","obj":"T1083"},{"id":"R848","pred":"punct","subj":"T1086","obj":"T1065"}],"text":"The studies reported here found that lack of SHARPIN protein in BMDC caused defective expression of pro-inflammatory mediators and impaired NF-κB activation upon ligand stimulation."}
GO-BP
{"project":"GO-BP","denotations":[{"id":"T2031","span":{"begin":140,"end":156},"obj":"http://purl.obolibrary.org/obo/GO_0051092"}],"text":"The studies reported here found that lack of SHARPIN protein in BMDC caused defective expression of pro-inflammatory mediators and impaired NF-κB activation upon ligand stimulation."}
GO-MF
{"project":"GO-MF","denotations":[{"id":"T2040","span":{"begin":162,"end":168},"obj":"http://purl.obolibrary.org/obo/GO_0005488"}],"text":"The studies reported here found that lack of SHARPIN protein in BMDC caused defective expression of pro-inflammatory mediators and impaired NF-κB activation upon ligand stimulation."}
sentences
{"project":"sentences","denotations":[{"id":"T992","span":{"begin":0,"end":181},"obj":"Sentence"},{"id":"T28","span":{"begin":0,"end":181},"obj":"Sentence"}],"namespaces":[{"prefix":"_base","uri":"http://pubannotation.org/ontology/tao.owl#"}],"text":"The studies reported here found that lack of SHARPIN protein in BMDC caused defective expression of pro-inflammatory mediators and impaired NF-κB activation upon ligand stimulation."}
events-check-again
{"project":"events-check-again","denotations":[{"id":"T2130","span":{"begin":37,"end":41},"obj":"Negative_regulation"},{"id":"T2131","span":{"begin":45,"end":52},"obj":"Protein"}],"relations":[{"id":"R1775","pred":"themeOf","subj":"T2131","obj":"T2130"}],"text":"The studies reported here found that lack of SHARPIN protein in BMDC caused defective expression of pro-inflammatory mediators and impaired NF-κB activation upon ligand stimulation."}
bionlp-st-ge-2016-reference-tees
{"project":"bionlp-st-ge-2016-reference-tees","denotations":[{"id":"T2155","span":{"begin":45,"end":60},"obj":"Protein"},{"id":"T2156","span":{"begin":140,"end":145},"obj":"Protein"},{"id":"T2157","span":{"begin":37,"end":41},"obj":"Negative_regulation"},{"id":"T2158","span":{"begin":146,"end":156},"obj":"Positive_regulation"},{"id":"T2159","span":{"begin":131,"end":139},"obj":"Negative_regulation"}],"relations":[{"id":"R1782","pred":"themeOf","subj":"T2155","obj":"T2157"},{"id":"R1783","pred":"themeOf","subj":"T2156","obj":"T2158"},{"id":"R1784","pred":"causeOf","subj":"T2157","obj":"T2159"},{"id":"R1785","pred":"themeOf","subj":"T2158","obj":"T2159"}],"text":"The studies reported here found that lack of SHARPIN protein in BMDC caused defective expression of pro-inflammatory mediators and impaired NF-κB activation upon ligand stimulation."}
bionlp-st-ge-2016-reference
{"project":"bionlp-st-ge-2016-reference","denotations":[{"id":"T973","span":{"begin":37,"end":41},"obj":"Negative_regulation"},{"id":"T974","span":{"begin":45,"end":52},"obj":"Protein"}],"relations":[{"id":"R755","pred":"themeOf","subj":"T974","obj":"T973"}],"namespaces":[{"prefix":"_base","uri":"http://bionlp.dbcls.jp/ontology/ge.owl#"}],"text":"The studies reported here found that lack of SHARPIN protein in BMDC caused defective expression of pro-inflammatory mediators and impaired NF-κB activation upon ligand stimulation."}
bionlp-st-ge-2016-uniprot
{"project":"bionlp-st-ge-2016-uniprot","denotations":[{"id":"T1972","span":{"begin":45,"end":52},"obj":"Q9H0F6"}],"namespaces":[{"prefix":"_base","uri":"http://www.uniprot.org/uniprot/"}],"text":"The studies reported here found that lack of SHARPIN protein in BMDC caused defective expression of pro-inflammatory mediators and impaired NF-κB activation upon ligand stimulation."}
test2
{"project":"test2","denotations":[{"id":"T941","span":{"begin":37,"end":41},"obj":"Negative_regulation"},{"id":"T942","span":{"begin":45,"end":52},"obj":"Protein"}],"relations":[{"id":"R738","pred":"themeOf","subj":"T942","obj":"T941"}],"text":"The studies reported here found that lack of SHARPIN protein in BMDC caused defective expression of pro-inflammatory mediators and impaired NF-κB activation upon ligand stimulation."}