PMC:3279418 / 15185-15342
Annnotations
pmc-enju-pas
Id | Subject | Object | Predicate | Lexical cue |
---|---|---|---|---|
T5178 | 0-2 | PRP | denotes | We |
T5179 | 3-7 | RB | denotes | next |
T5180 | 8-18 | VB | denotes | determined |
T5181 | 19-21 | IN | denotes | if |
T5182 | 22-31 | VB | denotes | disrupted |
T5183 | 32-37 | NN | denotes | NF-κB |
T5184 | 37-38 | -COMMA- | denotes | , |
T5185 | 39-48 | NN | denotes | TBK1/IRF3 |
T5186 | 48-49 | -COMMA- | denotes | , |
T5187 | 50-56 | CC | denotes | and/or |
T5188 | 57-61 | NN | denotes | MAPK |
T5189 | 62-71 | NN | denotes | signaling |
T5190 | 72-75 | MD | denotes | may |
T5191 | 76-84 | VB | denotes | underlie |
T5192 | 85-88 | DT | denotes | the |
T5193 | 89-97 | JJ | denotes | impaired |
T5194 | 98-106 | NN | denotes | cytokine |
T5195 | 107-117 | NN | denotes | production |
T5196 | 118-122 | IN | denotes | from |
T5197 | 123-133 | VB | denotes | stimulated |
T5198 | 134-151 | JJ | denotes | Sharpin-deficient |
T5199 | 152-156 | NN | denotes | BMDC |
R4312 | T5178 | T5180 | arg1Of | We,determined |
R4313 | T5180 | T5179 | arg1Of | determined,next |
R4314 | T5180 | T5181 | arg1Of | determined,if |
R4315 | T5183 | T5182 | arg2Of | NF-κB,disrupted |
R4316 | T5183 | T5184 | arg1Of | NF-κB,"," |
R4317 | T5184 | T5187 | arg1Of | ",",and/or |
R4318 | T5185 | T5184 | arg2Of | TBK1/IRF3,"," |
R4319 | T5187 | T5186 | arg1Of | and/or,"," |
R4320 | T5187 | T5190 | arg1Of | and/or,may |
R4321 | T5187 | T5191 | arg1Of | and/or,underlie |
R4322 | T5189 | T5187 | arg2Of | signaling,and/or |
R4323 | T5189 | T5188 | arg1Of | signaling,MAPK |
R4324 | T5191 | T5181 | arg2Of | underlie,if |
R4325 | T5191 | T5190 | arg2Of | underlie,may |
R4326 | T5195 | T5191 | arg2Of | production,underlie |
R4327 | T5195 | T5192 | arg1Of | production,the |
R4328 | T5195 | T5193 | arg1Of | production,impaired |
R4329 | T5195 | T5194 | arg1Of | production,cytokine |
R4330 | T5195 | T5196 | arg1Of | production,from |
R4331 | T5199 | T5196 | arg2Of | BMDC,from |
R4332 | T5199 | T5197 | arg2Of | BMDC,stimulated |
R4333 | T5199 | T5198 | arg1Of | BMDC,Sharpin-deficient |
bionlp-st-ge-2016-spacy-parsed
Id | Subject | Object | Predicate | Lexical cue |
---|---|---|---|---|
T4762 | 0-2 | PRP | denotes | We |
T4763 | 3-7 | JJ | denotes | next |
T4764 | 8-18 | VBN | denotes | determined |
T4765 | 19-21 | IN | denotes | if |
T4766 | 22-31 | VBN | denotes | disrupted |
T4767 | 32-37 | NNP | denotes | NF-κB |
T4768 | 37-38 | , | denotes | , |
T4769 | 39-48 | CD | denotes | TBK1/IRF3 |
T4770 | 48-49 | , | denotes | , |
T4771 | 50-56 | CC | denotes | and/or |
T4772 | 57-61 | NNP | denotes | MAPK |
T4773 | 62-71 | VBG | denotes | signaling |
T4774 | 72-75 | MD | denotes | may |
T4775 | 76-84 | VB | denotes | underlie |
T4776 | 85-88 | DT | denotes | the |
T4777 | 89-97 | VBN | denotes | impaired |
T4778 | 98-106 | NN | denotes | cytokine |
T4779 | 107-117 | NN | denotes | production |
T4780 | 118-122 | IN | denotes | from |
T4781 | 123-133 | VBN | denotes | stimulated |
T4782 | 134-151 | JJ | denotes | Sharpin-deficient |
T4783 | 152-156 | NNP | denotes | BMDC |
T4784 | 156-157 | . | denotes | . |
R3897 | T4762 | T4764 | nsubjpass | We,determined |
R3898 | T4763 | T4764 | advmod | next,determined |
R3899 | T4764 | T4764 | ROOT | determined,determined |
R3900 | T4765 | T4766 | mark | if,disrupted |
R3901 | T4766 | T4764 | advcl | disrupted,determined |
R3902 | T4767 | T4766 | dobj | NF-κB,disrupted |
R3903 | T4768 | T4767 | punct | ",",NF-κB |
R3904 | T4769 | T4767 | appos | TBK1/IRF3,NF-κB |
R3905 | T4770 | T4766 | punct | ",",disrupted |
R3906 | T4771 | T4766 | cc | and/or,disrupted |
R3907 | T4772 | T4773 | compound | MAPK,signaling |
R3908 | T4773 | T4775 | nsubj | signaling,underlie |
R3909 | T4774 | T4775 | aux | may,underlie |
R3910 | T4775 | T4764 | ccomp | underlie,determined |
R3911 | T4776 | T4779 | det | the,production |
R3912 | T4777 | T4779 | amod | impaired,production |
R3913 | T4778 | T4779 | compound | cytokine,production |
R3914 | T4779 | T4775 | dobj | production,underlie |
R3915 | T4780 | T4779 | prep | from,production |
R3916 | T4781 | T4783 | amod | stimulated,BMDC |
R3917 | T4782 | T4783 | compound | Sharpin-deficient,BMDC |
R3918 | T4783 | T4780 | pobj | BMDC,from |
R3919 | T4784 | T4775 | punct | .,underlie |
GO-BP
Id | Subject | Object | Predicate | Lexical cue |
---|---|---|---|---|
T5378 | 98-117 | http://purl.obolibrary.org/obo/GO_0001816 | denotes | cytokine production |
T5383 | 62-71 | http://purl.obolibrary.org/obo/GO_0023052 | denotes | signaling |
T5401 | 39-43 | http://purl.obolibrary.org/obo/GO_0008384 | denotes | TBK1 |
T5405 | 57-61 | http://purl.obolibrary.org/obo/GO_0004707 | denotes | MAPK |
T5410 | 57-71 | http://purl.obolibrary.org/obo/GO_0000165 | denotes | MAPK signaling |
GO-MF
Id | Subject | Object | Predicate | Lexical cue |
---|---|---|---|---|
T5421 | 39-43 | http://purl.obolibrary.org/obo/GO_0008384 | denotes | TBK1 |
T5425 | 57-61 | http://purl.obolibrary.org/obo/GO_0004707 | denotes | MAPK |
sentences
Id | Subject | Object | Predicate | Lexical cue |
---|---|---|---|---|
T4484 | 0-157 | Sentence | denotes | We next determined if disrupted NF-κB, TBK1/IRF3, and/or MAPK signaling may underlie the impaired cytokine production from stimulated Sharpin-deficient BMDC. |
T103 | 0-157 | Sentence | denotes | We next determined if disrupted NF-κB, TBK1/IRF3, and/or MAPK signaling may underlie the impaired cytokine production from stimulated Sharpin-deficient BMDC. |
events-check-again
Id | Subject | Object | Predicate | Lexical cue |
---|---|---|---|---|
T5597 | 39-43 | Protein | denotes | TBK1 |
T5598 | 44-48 | Protein | denotes | IRF3 |
T5599 | 134-141 | Protein | denotes | Sharpin |
T5600 | 142-151 | Negative_regulation | denotes | deficient |
R4526 | T5599 | T5600 | themeOf | Sharpin,deficient |
bionlp-st-ge-2016-reference-tees
Id | Subject | Object | Predicate | Lexical cue |
---|---|---|---|---|
T5679 | 32-37 | Protein | denotes | NF-κB |
T5680 | 39-43 | Protein | denotes | TBK1 |
T5681 | 44-48 | Protein | denotes | IRF3 |
T5682 | 57-61 | Protein | denotes | MAPK |
T5683 | 134-141 | Protein | denotes | Sharpin |
T5684 | 142-151 | Negative_regulation | denotes | deficient |
R4567 | T5683 | T5684 | themeOf | Sharpin,deficient |
bionlp-st-ge-2016-reference
Id | Subject | Object | Predicate | Lexical cue |
---|---|---|---|---|
T4439 | 39-43 | Protein | denotes | TBK1 |
T4440 | 44-48 | Protein | denotes | IRF3 |
T4441 | 134-141 | Protein | denotes | Sharpin |
T4442 | 142-151 | Negative_regulation | denotes | deficient |
R3608 | T4441 | T4442 | themeOf | Sharpin,deficient |
bionlp-st-ge-2016-uniprot
Id | Subject | Object | Predicate | Lexical cue |
---|---|---|---|---|
T5334 | 39-43 | Q9UHD2 | denotes | TBK1 |
T5335 | 44-48 | Q14653 | denotes | IRF3 |
T5336 | 134-141 | Q9H0F6 | denotes | Sharpin |
test2
Id | Subject | Object | Predicate | Lexical cue |
---|---|---|---|---|
T4380 | 39-43 | Protein | denotes | TBK1 |
T4381 | 44-48 | Protein | denotes | IRF3 |
T4382 | 134-141 | Protein | denotes | Sharpin |
T4383 | 142-151 | Negative_regulation | denotes | deficient |
R3583 | T4382 | T4383 | themeOf | Sharpin,deficient |