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PMC:3279418 / 15185-15342 JSONTXT

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pmc-enju-pas

Id Subject Object Predicate Lexical cue
T5178 0-2 PRP denotes We
T5179 3-7 RB denotes next
T5180 8-18 VB denotes determined
T5181 19-21 IN denotes if
T5182 22-31 VB denotes disrupted
T5183 32-37 NN denotes NF-κB
T5184 37-38 -COMMA- denotes ,
T5185 39-48 NN denotes TBK1/IRF3
T5186 48-49 -COMMA- denotes ,
T5187 50-56 CC denotes and/or
T5188 57-61 NN denotes MAPK
T5189 62-71 NN denotes signaling
T5190 72-75 MD denotes may
T5191 76-84 VB denotes underlie
T5192 85-88 DT denotes the
T5193 89-97 JJ denotes impaired
T5194 98-106 NN denotes cytokine
T5195 107-117 NN denotes production
T5196 118-122 IN denotes from
T5197 123-133 VB denotes stimulated
T5198 134-151 JJ denotes Sharpin-deficient
T5199 152-156 NN denotes BMDC
R4312 T5178 T5180 arg1Of We,determined
R4313 T5180 T5179 arg1Of determined,next
R4314 T5180 T5181 arg1Of determined,if
R4315 T5183 T5182 arg2Of NF-κB,disrupted
R4316 T5183 T5184 arg1Of NF-κB,","
R4317 T5184 T5187 arg1Of ",",and/or
R4318 T5185 T5184 arg2Of TBK1/IRF3,","
R4319 T5187 T5186 arg1Of and/or,","
R4320 T5187 T5190 arg1Of and/or,may
R4321 T5187 T5191 arg1Of and/or,underlie
R4322 T5189 T5187 arg2Of signaling,and/or
R4323 T5189 T5188 arg1Of signaling,MAPK
R4324 T5191 T5181 arg2Of underlie,if
R4325 T5191 T5190 arg2Of underlie,may
R4326 T5195 T5191 arg2Of production,underlie
R4327 T5195 T5192 arg1Of production,the
R4328 T5195 T5193 arg1Of production,impaired
R4329 T5195 T5194 arg1Of production,cytokine
R4330 T5195 T5196 arg1Of production,from
R4331 T5199 T5196 arg2Of BMDC,from
R4332 T5199 T5197 arg2Of BMDC,stimulated
R4333 T5199 T5198 arg1Of BMDC,Sharpin-deficient

bionlp-st-ge-2016-spacy-parsed

Id Subject Object Predicate Lexical cue
T4762 0-2 PRP denotes We
T4763 3-7 JJ denotes next
T4764 8-18 VBN denotes determined
T4765 19-21 IN denotes if
T4766 22-31 VBN denotes disrupted
T4767 32-37 NNP denotes NF-κB
T4768 37-38 , denotes ,
T4769 39-48 CD denotes TBK1/IRF3
T4770 48-49 , denotes ,
T4771 50-56 CC denotes and/or
T4772 57-61 NNP denotes MAPK
T4773 62-71 VBG denotes signaling
T4774 72-75 MD denotes may
T4775 76-84 VB denotes underlie
T4776 85-88 DT denotes the
T4777 89-97 VBN denotes impaired
T4778 98-106 NN denotes cytokine
T4779 107-117 NN denotes production
T4780 118-122 IN denotes from
T4781 123-133 VBN denotes stimulated
T4782 134-151 JJ denotes Sharpin-deficient
T4783 152-156 NNP denotes BMDC
T4784 156-157 . denotes .
R3897 T4762 T4764 nsubjpass We,determined
R3898 T4763 T4764 advmod next,determined
R3899 T4764 T4764 ROOT determined,determined
R3900 T4765 T4766 mark if,disrupted
R3901 T4766 T4764 advcl disrupted,determined
R3902 T4767 T4766 dobj NF-κB,disrupted
R3903 T4768 T4767 punct ",",NF-κB
R3904 T4769 T4767 appos TBK1/IRF3,NF-κB
R3905 T4770 T4766 punct ",",disrupted
R3906 T4771 T4766 cc and/or,disrupted
R3907 T4772 T4773 compound MAPK,signaling
R3908 T4773 T4775 nsubj signaling,underlie
R3909 T4774 T4775 aux may,underlie
R3910 T4775 T4764 ccomp underlie,determined
R3911 T4776 T4779 det the,production
R3912 T4777 T4779 amod impaired,production
R3913 T4778 T4779 compound cytokine,production
R3914 T4779 T4775 dobj production,underlie
R3915 T4780 T4779 prep from,production
R3916 T4781 T4783 amod stimulated,BMDC
R3917 T4782 T4783 compound Sharpin-deficient,BMDC
R3918 T4783 T4780 pobj BMDC,from
R3919 T4784 T4775 punct .,underlie

GO-BP

Id Subject Object Predicate Lexical cue
T5378 98-117 http://purl.obolibrary.org/obo/GO_0001816 denotes cytokine production
T5383 62-71 http://purl.obolibrary.org/obo/GO_0023052 denotes signaling
T5401 39-43 http://purl.obolibrary.org/obo/GO_0008384 denotes TBK1
T5405 57-61 http://purl.obolibrary.org/obo/GO_0004707 denotes MAPK
T5410 57-71 http://purl.obolibrary.org/obo/GO_0000165 denotes MAPK signaling

GO-MF

Id Subject Object Predicate Lexical cue
T5421 39-43 http://purl.obolibrary.org/obo/GO_0008384 denotes TBK1
T5425 57-61 http://purl.obolibrary.org/obo/GO_0004707 denotes MAPK

sentences

Id Subject Object Predicate Lexical cue
T4484 0-157 Sentence denotes We next determined if disrupted NF-κB, TBK1/IRF3, and/or MAPK signaling may underlie the impaired cytokine production from stimulated Sharpin-deficient BMDC.
T103 0-157 Sentence denotes We next determined if disrupted NF-κB, TBK1/IRF3, and/or MAPK signaling may underlie the impaired cytokine production from stimulated Sharpin-deficient BMDC.

events-check-again

Id Subject Object Predicate Lexical cue
T5597 39-43 Protein denotes TBK1
T5598 44-48 Protein denotes IRF3
T5599 134-141 Protein denotes Sharpin
T5600 142-151 Negative_regulation denotes deficient
R4526 T5599 T5600 themeOf Sharpin,deficient

bionlp-st-ge-2016-reference-tees

Id Subject Object Predicate Lexical cue
T5679 32-37 Protein denotes NF-κB
T5680 39-43 Protein denotes TBK1
T5681 44-48 Protein denotes IRF3
T5682 57-61 Protein denotes MAPK
T5683 134-141 Protein denotes Sharpin
T5684 142-151 Negative_regulation denotes deficient
R4567 T5683 T5684 themeOf Sharpin,deficient

bionlp-st-ge-2016-reference

Id Subject Object Predicate Lexical cue
T4439 39-43 Protein denotes TBK1
T4440 44-48 Protein denotes IRF3
T4441 134-141 Protein denotes Sharpin
T4442 142-151 Negative_regulation denotes deficient
R3608 T4441 T4442 themeOf Sharpin,deficient

bionlp-st-ge-2016-uniprot

Id Subject Object Predicate Lexical cue
T5334 39-43 Q9UHD2 denotes TBK1
T5335 44-48 Q14653 denotes IRF3
T5336 134-141 Q9H0F6 denotes Sharpin

test2

Id Subject Object Predicate Lexical cue
T4380 39-43 Protein denotes TBK1
T4381 44-48 Protein denotes IRF3
T4382 134-141 Protein denotes Sharpin
T4383 142-151 Negative_regulation denotes deficient
R3583 T4382 T4383 themeOf Sharpin,deficient