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PMC:3279418 / 1357-1653 JSONTXT

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pmc-enju-pas

Id Subject Object Predicate Lexical cue
T605 0-1 -RRB- denotes )
T606 2-5 CC denotes and
T607 6-10 NN denotes TBK1
T608 11-20 NN denotes signaling
T609 21-29 NN denotes pathways
T610 30-34 VB denotes were
T611 35-41 JJ denotes intact
T612 43-44 DT denotes A
T613 45-50 JJ denotes mixed
T614 51-61 NN denotes lymphocyte
T615 62-70 NN denotes reaction
T616 71-77 VB denotes showed
T617 78-82 IN denotes that
T618 83-89 JJ denotes mutant
T619 90-94 NN denotes BMDC
T620 95-99 RB denotes only
T621 100-107 VB denotes induced
T622 108-109 DT denotes a
T623 110-114 JJ denotes weak
T624 115-118 NN denotes Th1
T625 119-125 JJ denotes immune
T626 126-134 NN denotes response
T627 135-138 CC denotes but
T628 139-149 VB denotes stimulated
T629 150-159 VB denotes increased
T630 160-163 NN denotes Th2
T631 164-172 NN denotes cytokine
T632 173-183 NN denotes production
T633 184-188 IN denotes from
T634 189-199 JJ denotes allogeneic
T635 200-205 NN denotes naïve
T636 206-210 JJ denotes CD4+
T637 211-212 NN denotes T
T638 213-218 NN denotes cells
T639 220-222 IN denotes In
T640 223-233 NN denotes conclusion
T641 233-234 -COMMA- denotes ,
T642 235-239 NN denotes loss
T643 240-242 IN denotes of
T644 243-250 NN denotes Sharpin
T645 251-253 IN denotes in
T646 254-258 NN denotes mice
T647 259-272 RB denotes significantly
T648 273-280 VB denotes affects
T649 281-284 DT denotes the
T650 285-291 JJ denotes immune
R525 T609 T606 arg2Of pathways,and
R526 T609 T607 arg1Of pathways,TBK1
R527 T609 T608 arg1Of pathways,signaling
R529 T611 T610 arg2Of intact,were
R530 T615 T612 arg1Of reaction,A
R531 T615 T613 arg1Of reaction,mixed
R532 T615 T614 arg1Of reaction,lymphocyte
R533 T615 T616 arg1Of reaction,showed
R534 T619 T618 arg1Of BMDC,mutant
R535 T619 T621 arg1Of BMDC,induced
R536 T619 T628 arg1Of BMDC,stimulated
R537 T621 T627 arg1Of induced,but
R538 T626 T621 arg2Of response,induced
R539 T626 T622 arg1Of response,a
R540 T626 T623 arg1Of response,weak
R541 T626 T624 arg1Of response,Th1
R542 T626 T625 arg1Of response,immune
R543 T627 T616 arg2Of but,showed
R544 T627 T617 arg1Of but,that
R545 T627 T620 arg1Of but,only
R546 T628 T627 arg2Of stimulated,but
R547 T628 T633 arg1Of stimulated,from
R548 T632 T628 arg2Of production,stimulated
R549 T632 T629 arg2Of production,increased
R550 T632 T630 arg1Of production,Th2
R551 T632 T631 arg1Of production,cytokine
R552 T638 T633 arg2Of cells,from
R553 T638 T634 arg1Of cells,allogeneic
R554 T638 T635 arg1Of cells,naïve
R555 T638 T636 arg1Of cells,CD4+
R556 T638 T637 arg1Of cells,T
R557 T640 T639 arg2Of conclusion,In
R558 T642 T643 arg1Of loss,of
R559 T642 T645 arg1Of loss,in
R560 T642 T648 arg1Of loss,affects
R561 T644 T643 arg2Of Sharpin,of
R562 T646 T645 arg2Of mice,in
R563 T648 T647 arg1Of affects,significantly

bionlp-st-ge-2016-spacy-parsed

Id Subject Object Predicate Lexical cue
T333 0-1 -RRB- denotes )
T334 2-5 CC denotes and
T335 6-10 CD denotes TBK1
T336 11-20 VBG denotes signaling
T337 21-29 NNS denotes pathways
T338 30-34 VBD denotes were
T339 35-41 JJ denotes intact
T340 41-42 . denotes .
T341 43-44 DT denotes A
T342 45-50 JJ denotes mixed
T343 51-61 NN denotes lymphocyte
T344 62-70 NN denotes reaction
T345 71-77 VBD denotes showed
T346 78-82 IN denotes that
T347 83-89 JJ denotes mutant
T348 90-94 NNP denotes BMDC
T349 95-99 RB denotes only
T350 100-107 VBD denotes induced
T351 108-109 DT denotes a
T352 110-114 JJ denotes weak
T353 115-118 CD denotes Th1
T354 119-125 JJ denotes immune
T355 126-134 NN denotes response
T356 135-138 CC denotes but
T357 139-149 VBD denotes stimulated
T358 150-159 VBN denotes increased
T359 160-163 JJ denotes Th2
T360 164-172 NN denotes cytokine
T361 173-183 NN denotes production
T362 184-188 IN denotes from
T363 189-199 JJ denotes allogeneic
T364 200-205 NN denotes naïve
T365 206-209 NNP denotes CD4
T366 209-210 NNP denotes +
T367 211-212 NNP denotes T
T368 213-218 NNS denotes cells
T369 218-219 . denotes .
T370 220-222 IN denotes In
T371 223-233 NN denotes conclusion
T372 233-234 , denotes ,
T373 235-239 NN denotes loss
T374 240-242 IN denotes of
T375 243-250 NNP denotes Sharpin
T376 251-253 IN denotes in
T377 254-258 NNS denotes mice
T378 259-272 RB denotes significantly
T379 273-280 VBZ denotes affects
T380 281-284 DT denotes the
T381 285-291 JJ denotes immune
R251 T335 T337 nummod TBK1,pathways
R252 T336 T337 compound signaling,pathways
R255 T339 T338 acomp intact,were
R257 T341 T344 det A,reaction
R258 T342 T344 amod mixed,reaction
R259 T343 T344 compound lymphocyte,reaction
R260 T344 T345 nsubj reaction,showed
R261 T345 T345 ROOT showed,showed
R262 T346 T350 mark that,induced
R263 T347 T348 compound mutant,BMDC
R264 T348 T350 nsubj BMDC,induced
R265 T349 T350 advmod only,induced
R266 T350 T345 ccomp induced,showed
R267 T351 T355 det a,response
R268 T352 T355 amod weak,response
R269 T353 T355 nummod Th1,response
R270 T354 T355 amod immune,response
R271 T355 T350 dobj response,induced
R272 T356 T350 cc but,induced
R273 T357 T350 conj stimulated,induced
R274 T358 T361 amod increased,production
R275 T359 T361 amod Th2,production
R276 T360 T361 compound cytokine,production
R277 T361 T357 dobj production,stimulated
R278 T362 T361 prep from,production
R279 T363 T364 amod allogeneic,naïve
R280 T364 T368 amod naïve,cells
R281 T365 T368 compound CD4,cells
R282 T366 T368 compound +,cells
R283 T367 T368 compound T,cells
R284 T368 T362 pobj cells,from
R285 T369 T345 punct .,showed
R286 T370 T379 prep In,affects
R287 T371 T370 pobj conclusion,In
R288 T372 T379 punct ",",affects
R289 T373 T379 nsubj loss,affects
R290 T374 T373 prep of,loss
R291 T375 T374 pobj Sharpin,of
R292 T376 T373 prep in,loss
R293 T377 T376 pobj mice,in
R294 T378 T379 advmod significantly,affects
R295 T379 T379 ROOT affects,affects

GO-BP

Id Subject Object Predicate Lexical cue
T700 164-183 http://purl.obolibrary.org/obo/GO_0001816 denotes cytokine production
T711 11-20 http://purl.obolibrary.org/obo/GO_0023052 denotes signaling
T714 6-10 http://purl.obolibrary.org/obo/GO_0008384 denotes TBK1
T715 11-29 http://purl.obolibrary.org/obo/GO_0007165 denotes signaling pathways
T716 115-134 http://purl.obolibrary.org/obo/GO_0042088 denotes Th1 immune response
T717 119-134 http://purl.obolibrary.org/obo/GO_0006955 denotes immune response
T719 119-149 http://purl.obolibrary.org/obo/GO_0002922 denotes immune response but stimulated
T720 119-149 http://purl.obolibrary.org/obo/GO_0045089 denotes immune response but stimulated
T721 119-149 http://purl.obolibrary.org/obo/GO_0050778 denotes immune response but stimulated
T722 119-149 http://purl.obolibrary.org/obo/GO_0002821 denotes immune response but stimulated

GO-MF

Id Subject Object Predicate Lexical cue
T726 6-10 http://purl.obolibrary.org/obo/GO_0008384 denotes TBK1

GO-CC

Id Subject Object Predicate Lexical cue
T729 213-218 http://purl.obolibrary.org/obo/GO_0005623 denotes cells

sentences

Id Subject Object Predicate Lexical cue
T116 43-219 Sentence denotes A mixed lymphocyte reaction showed that mutant BMDC only induced a weak Th1 immune response but stimulated increased Th2 cytokine production from allogeneic naïve CD4+ T cells.
T11 43-219 Sentence denotes A mixed lymphocyte reaction showed that mutant BMDC only induced a weak Th1 immune response but stimulated increased Th2 cytokine production from allogeneic naïve CD4+ T cells.

events-check-again

Id Subject Object Predicate Lexical cue
T835 6-10 Protein denotes TBK1
T836 235-239 Negative_regulation denotes loss
T837 243-250 Protein denotes Sharpin
R629 T837 T836 themeOf Sharpin,loss

bionlp-st-ge-2016-reference-tees

Id Subject Object Predicate Lexical cue
T892 6-10 Protein denotes TBK1
T894 206-210 Protein denotes CD4+
T895 243-250 Protein denotes Sharpin
T896 235-239 Negative_regulation denotes loss
R661 T895 T896 themeOf Sharpin,loss

bionlp-st-ge-2016-reference

Id Subject Object Predicate Lexical cue
T104 6-10 Protein denotes TBK1
T105 235-239 Negative_regulation denotes loss
T106 243-250 Protein denotes Sharpin
R42 T106 T105 themeOf Sharpin,loss

bionlp-st-ge-2016-uniprot

Id Subject Object Predicate Lexical cue
T685 6-10 Q9UHD2 denotes TBK1
T686 206-209 P01730 denotes CD4
T687 243-250 Q9H0F6 denotes Sharpin

test2

Id Subject Object Predicate Lexical cue
T66 6-10 Protein denotes TBK1
T67 235-239 Negative_regulation denotes loss
T68 243-250 Protein denotes Sharpin
R34 T68 T67 themeOf Sharpin,loss