PMC:3279418 / 1075-1226
Annnotations
pmc-enju-pas
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bionlp-st-ge-2016-spacy-parsed
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GO-BP
{"project":"GO-BP","denotations":[{"id":"T704","span":{"begin":73,"end":82},"obj":"http://purl.obolibrary.org/obo/GO_0046903"},{"id":"T706","span":{"begin":55,"end":68},"obj":"http://purl.obolibrary.org/obo/GO_0006351"}],"text":"However, stimulated SHARPIN-deficient BMDC had reduced transcription and secretion of pro-inflammatory mediators IL6, IL12P70, GMCSF, and nitric oxide."}
sentences
{"project":"sentences","denotations":[{"id":"T114","span":{"begin":0,"end":151},"obj":"Sentence"},{"id":"T9","span":{"begin":0,"end":151},"obj":"Sentence"}],"namespaces":[{"prefix":"_base","uri":"http://pubannotation.org/ontology/tao.owl#"}],"text":"However, stimulated SHARPIN-deficient BMDC had reduced transcription and secretion of pro-inflammatory mediators IL6, IL12P70, GMCSF, and nitric oxide."}
events-check-again
{"project":"events-check-again","denotations":[{"id":"T815","span":{"begin":20,"end":27},"obj":"Protein"},{"id":"T816","span":{"begin":28,"end":37},"obj":"Negative_regulation"},{"id":"T817","span":{"begin":47,"end":54},"obj":"Negative_regulation"},{"id":"T818","span":{"begin":47,"end":54},"obj":"Negative_regulation"},{"id":"T819","span":{"begin":47,"end":54},"obj":"Negative_regulation"},{"id":"T820","span":{"begin":47,"end":54},"obj":"Negative_regulation"},{"id":"T821","span":{"begin":55,"end":68},"obj":"Transcription"},{"id":"T822","span":{"begin":55,"end":68},"obj":"Transcription"},{"id":"T823","span":{"begin":73,"end":82},"obj":"Gene_expression"},{"id":"T824","span":{"begin":73,"end":82},"obj":"Gene_expression"},{"id":"T825","span":{"begin":113,"end":116},"obj":"Protein"},{"id":"T826","span":{"begin":127,"end":132},"obj":"Protein"}],"relations":[{"id":"R711","pred":"themeOf","subj":"T826","obj":"T822"},{"id":"R712","pred":"themeOf","subj":"T826","obj":"T823"},{"id":"R700","pred":"themeOf","subj":"T815","obj":"T816"},{"id":"R701","pred":"causeOf","subj":"T816","obj":"T818"},{"id":"R702","pred":"causeOf","subj":"T816","obj":"T820"},{"id":"R703","pred":"causeOf","subj":"T816","obj":"T819"},{"id":"R704","pred":"causeOf","subj":"T816","obj":"T817"},{"id":"R705","pred":"themeOf","subj":"T821","obj":"T818"},{"id":"R706","pred":"themeOf","subj":"T822","obj":"T820"},{"id":"R707","pred":"themeOf","subj":"T823","obj":"T817"},{"id":"R708","pred":"themeOf","subj":"T824","obj":"T819"},{"id":"R709","pred":"themeOf","subj":"T825","obj":"T821"},{"id":"R710","pred":"themeOf","subj":"T825","obj":"T824"}],"text":"However, stimulated SHARPIN-deficient BMDC had reduced transcription and secretion of pro-inflammatory mediators IL6, IL12P70, GMCSF, and nitric oxide."}
bionlp-st-ge-2016-reference-tees
{"project":"bionlp-st-ge-2016-reference-tees","denotations":[{"id":"T874","span":{"begin":20,"end":27},"obj":"Protein"},{"id":"T875","span":{"begin":113,"end":116},"obj":"Protein"},{"id":"T876","span":{"begin":118,"end":125},"obj":"Protein"},{"id":"T877","span":{"begin":127,"end":132},"obj":"Protein"},{"id":"T878","span":{"begin":28,"end":37},"obj":"Negative_regulation"},{"id":"T879","span":{"begin":55,"end":68},"obj":"Transcription"},{"id":"T880","span":{"begin":55,"end":68},"obj":"Transcription"},{"id":"T881","span":{"begin":55,"end":68},"obj":"Transcription"},{"id":"T882","span":{"begin":73,"end":82},"obj":"Localization"},{"id":"T883","span":{"begin":73,"end":82},"obj":"Localization"},{"id":"T884","span":{"begin":73,"end":82},"obj":"Localization"},{"id":"T885","span":{"begin":47,"end":54},"obj":"Negative_regulation"},{"id":"T886","span":{"begin":47,"end":54},"obj":"Negative_regulation"},{"id":"T887","span":{"begin":47,"end":54},"obj":"Negative_regulation"}],"relations":[{"id":"R650","pred":"themeOf","subj":"T874","obj":"T878"},{"id":"R651","pred":"themeOf","subj":"T875","obj":"T879"},{"id":"R652","pred":"themeOf","subj":"T875","obj":"T882"},{"id":"R653","pred":"themeOf","subj":"T876","obj":"T880"},{"id":"R654","pred":"themeOf","subj":"T876","obj":"T883"},{"id":"R655","pred":"themeOf","subj":"T877","obj":"T881"},{"id":"R656","pred":"themeOf","subj":"T877","obj":"T884"},{"id":"R657","pred":"themeOf","subj":"T879","obj":"T885"},{"id":"R658","pred":"themeOf","subj":"T880","obj":"T886"},{"id":"R659","pred":"themeOf","subj":"T881","obj":"T887"}],"text":"However, stimulated SHARPIN-deficient BMDC had reduced transcription and secretion of pro-inflammatory mediators IL6, IL12P70, GMCSF, and nitric oxide."}
bionlp-st-ge-2016-reference
{"project":"bionlp-st-ge-2016-reference","denotations":[{"id":"T93","span":{"begin":73,"end":82},"obj":"Gene_expression"},{"id":"T94","span":{"begin":113,"end":116},"obj":"Protein"},{"id":"T95","span":{"begin":127,"end":132},"obj":"Protein"},{"id":"T84","span":{"begin":20,"end":27},"obj":"Protein"},{"id":"T85","span":{"begin":28,"end":37},"obj":"Negative_regulation"},{"id":"T86","span":{"begin":47,"end":54},"obj":"Negative_regulation"},{"id":"T87","span":{"begin":47,"end":54},"obj":"Negative_regulation"},{"id":"T88","span":{"begin":47,"end":54},"obj":"Negative_regulation"},{"id":"T89","span":{"begin":47,"end":54},"obj":"Negative_regulation"},{"id":"T90","span":{"begin":55,"end":68},"obj":"Transcription"},{"id":"T91","span":{"begin":55,"end":68},"obj":"Transcription"},{"id":"T92","span":{"begin":73,"end":82},"obj":"Gene_expression"}],"relations":[{"id":"R36","pred":"themeOf","subj":"T94","obj":"T90"},{"id":"R37","pred":"themeOf","subj":"T94","obj":"T93"},{"id":"R38","pred":"themeOf","subj":"T95","obj":"T91"},{"id":"R678","pred":"causeOf","subj":"T85","obj":"T87"},{"id":"R679","pred":"causeOf","subj":"T85","obj":"T89"},{"id":"R680","pred":"causeOf","subj":"T85","obj":"T88"},{"id":"R681","pred":"causeOf","subj":"T85","obj":"T86"},{"id":"R682","pred":"themeOf","subj":"T90","obj":"T87"},{"id":"R683","pred":"themeOf","subj":"T91","obj":"T89"},{"id":"R684","pred":"themeOf","subj":"T92","obj":"T86"},{"id":"R35","pred":"themeOf","subj":"T93","obj":"T88"},{"id":"R677","pred":"themeOf","subj":"T84","obj":"T85"},{"id":"R39","pred":"themeOf","subj":"T95","obj":"T92"}],"namespaces":[{"prefix":"_base","uri":"http://bionlp.dbcls.jp/ontology/ge.owl#"}],"text":"However, stimulated SHARPIN-deficient BMDC had reduced transcription and secretion of pro-inflammatory mediators IL6, IL12P70, GMCSF, and nitric oxide."}
bionlp-st-ge-2016-uniprot
{"project":"bionlp-st-ge-2016-uniprot","denotations":[{"id":"T675","span":{"begin":20,"end":27},"obj":"Q9H0F6"},{"id":"T676","span":{"begin":113,"end":116},"obj":"P05231"},{"id":"T677","span":{"begin":127,"end":132},"obj":"P04141"}],"namespaces":[{"prefix":"_base","uri":"http://www.uniprot.org/uniprot/"}],"text":"However, stimulated SHARPIN-deficient BMDC had reduced transcription and secretion of pro-inflammatory mediators IL6, IL12P70, GMCSF, and nitric oxide."}
test2
{"project":"test2","denotations":[{"id":"T52","span":{"begin":20,"end":27},"obj":"Protein"},{"id":"T53","span":{"begin":28,"end":37},"obj":"Negative_regulation"},{"id":"T54","span":{"begin":47,"end":54},"obj":"Negative_regulation"},{"id":"T55","span":{"begin":55,"end":68},"obj":"Transcription"},{"id":"T56","span":{"begin":113,"end":116},"obj":"Protein"},{"id":"T57","span":{"begin":127,"end":132},"obj":"Protein"}],"relations":[{"id":"R25","pred":"themeOf","subj":"T52","obj":"T53"},{"id":"R26","pred":"causeOf","subj":"T53","obj":"T54"},{"id":"R27","pred":"themeOf","subj":"T55","obj":"T54"},{"id":"R28","pred":"themeOf","subj":"T56","obj":"T55"},{"id":"R29","pred":"themeOf","subj":"T57","obj":"T55"}],"text":"However, stimulated SHARPIN-deficient BMDC had reduced transcription and secretion of pro-inflammatory mediators IL6, IL12P70, GMCSF, and nitric oxide."}