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PMC:3279418 / 1075-1226 JSONTXT

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pmc-enju-pas

Id Subject Object Predicate Lexical cue
T561 0-7 RB denotes However
T562 7-8 -COMMA- denotes ,
T563 9-19 VB denotes stimulated
T564 20-37 JJ denotes SHARPIN-deficient
T565 38-42 NN denotes BMDC
T566 43-46 VB denotes had
T567 47-54 VB denotes reduced
T568 55-68 NN denotes transcription
T569 69-72 CC denotes and
T570 73-82 NN denotes secretion
T571 83-85 IN denotes of
T572 86-102 JJ denotes pro-inflammatory
T573 103-112 NN denotes mediators
T574 113-116 NN denotes IL6
T575 116-117 -COMMA- denotes ,
T576 118-125 NN denotes IL12P70
T577 125-126 -COMMA- denotes ,
T578 127-132 NN denotes GMCSF
T579 132-133 -COMMA- denotes ,
T580 134-137 CC denotes and
T581 138-144 JJ denotes nitric
T582 145-150 NN denotes oxide
R479 T565 T563 arg1Of BMDC,stimulated
R480 T565 T564 arg1Of BMDC,SHARPIN-deficient
R481 T565 T566 arg1Of BMDC,had
R482 T565 T567 arg1Of BMDC,reduced
R483 T567 T561 arg1Of reduced,However
R484 T567 T562 arg1Of reduced,","
R485 T567 T566 arg2Of reduced,had
R486 T568 T569 arg1Of transcription,and
R487 T569 T567 arg2Of and,reduced
R488 T569 T571 arg1Of and,of
R489 T570 T569 arg2Of secretion,and
R490 T573 T572 arg1Of mediators,pro-inflammatory
R491 T574 T575 arg1Of IL6,","
R492 T575 T577 arg1Of ",",","
R493 T576 T575 arg2Of IL12P70,","
R494 T577 T580 arg1Of ",",and
R495 T578 T577 arg2Of GMCSF,","
R496 T580 T571 arg2Of and,of
R497 T580 T573 arg1Of and,mediators
R498 T580 T579 arg1Of and,","
R499 T582 T580 arg2Of oxide,and
R500 T582 T581 arg1Of oxide,nitric

bionlp-st-ge-2016-spacy-parsed

Id Subject Object Predicate Lexical cue
T286 0-7 RB denotes However
T287 7-8 , denotes ,
T288 9-19 VBD denotes stimulated
T289 20-37 JJ denotes SHARPIN-deficient
T290 38-42 NNP denotes BMDC
T291 43-46 VBD denotes had
T292 47-54 VBN denotes reduced
T293 55-68 NN denotes transcription
T294 69-72 CC denotes and
T295 73-82 NN denotes secretion
T296 83-85 IN denotes of
T297 86-102 JJ denotes pro-inflammatory
T298 103-112 NNS denotes mediators
T299 113-116 NNP denotes IL6
T300 116-117 , denotes ,
T301 118-125 NNP denotes IL12P70
T302 125-126 , denotes ,
T303 127-132 NNP denotes GMCSF
T304 132-133 , denotes ,
T305 134-137 CC denotes and
T306 138-144 JJ denotes nitric
T307 145-150 NN denotes oxide
T308 150-151 . denotes .
R202 T286 T288 advmod However,stimulated
R203 T287 T288 punct ",",stimulated
R204 T288 T288 ROOT stimulated,stimulated
R205 T289 T290 compound SHARPIN-deficient,BMDC
R206 T290 T292 nsubj BMDC,reduced
R207 T291 T292 aux had,reduced
R208 T292 T288 ccomp reduced,stimulated
R209 T293 T292 dobj transcription,reduced
R210 T294 T293 cc and,transcription
R211 T295 T293 conj secretion,transcription
R212 T296 T293 prep of,transcription
R213 T297 T298 amod pro-inflammatory,mediators
R214 T298 T296 pobj mediators,of
R215 T299 T292 dobj IL6,reduced
R216 T300 T299 punct ",",IL6
R217 T301 T299 conj IL12P70,IL6
R218 T302 T301 punct ",",IL12P70
R219 T303 T301 conj GMCSF,IL12P70
R220 T304 T303 punct ",",GMCSF
R221 T305 T303 cc and,GMCSF
R222 T306 T307 amod nitric,oxide
R223 T307 T303 conj oxide,GMCSF
R224 T308 T292 punct .,reduced

GO-BP

Id Subject Object Predicate Lexical cue
T704 73-82 http://purl.obolibrary.org/obo/GO_0046903 denotes secretion
T706 55-68 http://purl.obolibrary.org/obo/GO_0006351 denotes transcription

sentences

Id Subject Object Predicate Lexical cue
T114 0-151 Sentence denotes However, stimulated SHARPIN-deficient BMDC had reduced transcription and secretion of pro-inflammatory mediators IL6, IL12P70, GMCSF, and nitric oxide.
T9 0-151 Sentence denotes However, stimulated SHARPIN-deficient BMDC had reduced transcription and secretion of pro-inflammatory mediators IL6, IL12P70, GMCSF, and nitric oxide.

events-check-again

Id Subject Object Predicate Lexical cue
T815 20-27 Protein denotes SHARPIN
T816 28-37 Negative_regulation denotes deficient
T817 47-54 Negative_regulation denotes reduced
T818 47-54 Negative_regulation denotes reduced
T819 47-54 Negative_regulation denotes reduced
T820 47-54 Negative_regulation denotes reduced
T821 55-68 Transcription denotes transcription
T822 55-68 Transcription denotes transcription
T823 73-82 Gene_expression denotes secretion
T824 73-82 Gene_expression denotes secretion
T825 113-116 Protein denotes IL6
T826 127-132 Protein denotes GMCSF
R711 T826 T822 themeOf GMCSF,transcription
R712 T826 T823 themeOf GMCSF,secretion
R700 T815 T816 themeOf SHARPIN,deficient
R701 T816 T818 causeOf deficient,reduced
R702 T816 T820 causeOf deficient,reduced
R703 T816 T819 causeOf deficient,reduced
R704 T816 T817 causeOf deficient,reduced
R705 T821 T818 themeOf transcription,reduced
R706 T822 T820 themeOf transcription,reduced
R707 T823 T817 themeOf secretion,reduced
R708 T824 T819 themeOf secretion,reduced
R709 T825 T821 themeOf IL6,transcription
R710 T825 T824 themeOf IL6,secretion

bionlp-st-ge-2016-reference-tees

Id Subject Object Predicate Lexical cue
T874 20-27 Protein denotes SHARPIN
T875 113-116 Protein denotes IL6
T876 118-125 Protein denotes IL12P70
T877 127-132 Protein denotes GMCSF
T878 28-37 Negative_regulation denotes deficient
T879 55-68 Transcription denotes transcription
T880 55-68 Transcription denotes transcription
T881 55-68 Transcription denotes transcription
T882 73-82 Localization denotes secretion
T883 73-82 Localization denotes secretion
T884 73-82 Localization denotes secretion
T885 47-54 Negative_regulation denotes reduced
T886 47-54 Negative_regulation denotes reduced
T887 47-54 Negative_regulation denotes reduced
R650 T874 T878 themeOf SHARPIN,deficient
R651 T875 T879 themeOf IL6,transcription
R652 T875 T882 themeOf IL6,secretion
R653 T876 T880 themeOf IL12P70,transcription
R654 T876 T883 themeOf IL12P70,secretion
R655 T877 T881 themeOf GMCSF,transcription
R656 T877 T884 themeOf GMCSF,secretion
R657 T879 T885 themeOf transcription,reduced
R658 T880 T886 themeOf transcription,reduced
R659 T881 T887 themeOf transcription,reduced

bionlp-st-ge-2016-reference

Id Subject Object Predicate Lexical cue
T93 73-82 Gene_expression denotes secretion
T94 113-116 Protein denotes IL6
T95 127-132 Protein denotes GMCSF
T84 20-27 Protein denotes SHARPIN
T85 28-37 Negative_regulation denotes deficient
T86 47-54 Negative_regulation denotes reduced
T87 47-54 Negative_regulation denotes reduced
T88 47-54 Negative_regulation denotes reduced
T89 47-54 Negative_regulation denotes reduced
T90 55-68 Transcription denotes transcription
T91 55-68 Transcription denotes transcription
T92 73-82 Gene_expression denotes secretion
R36 T94 T90 themeOf IL6,transcription
R37 T94 T93 themeOf IL6,secretion
R38 T95 T91 themeOf GMCSF,transcription
R678 T85 T87 causeOf deficient,reduced
R679 T85 T89 causeOf deficient,reduced
R680 T85 T88 causeOf deficient,reduced
R681 T85 T86 causeOf deficient,reduced
R682 T90 T87 themeOf transcription,reduced
R683 T91 T89 themeOf transcription,reduced
R684 T92 T86 themeOf secretion,reduced
R35 T93 T88 themeOf secretion,reduced
R677 T84 T85 themeOf SHARPIN,deficient
R39 T95 T92 themeOf GMCSF,secretion

bionlp-st-ge-2016-uniprot

Id Subject Object Predicate Lexical cue
T675 20-27 Q9H0F6 denotes SHARPIN
T676 113-116 P05231 denotes IL6
T677 127-132 P04141 denotes GMCSF

test2

Id Subject Object Predicate Lexical cue
T52 20-27 Protein denotes SHARPIN
T53 28-37 Negative_regulation denotes deficient
T54 47-54 Negative_regulation denotes reduced
T55 55-68 Transcription denotes transcription
T56 113-116 Protein denotes IL6
T57 127-132 Protein denotes GMCSF
R25 T52 T53 themeOf SHARPIN,deficient
R26 T53 T54 causeOf deficient,reduced
R27 T55 T54 themeOf transcription,reduced
R28 T56 T55 themeOf IL6,transcription
R29 T57 T55 themeOf GMCSF,transcription