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PMC:3218875 / 2821-3049 JSONTXT

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testone

Id Subject Object Predicate Lexical cue
T280 48-59 Binding denotes association
T277 145-150 Protein denotes c-REL
T276 132-139 Protein denotes TNFAIP3
T275 125-130 Protein denotes TRAF1
T274 119-123 Protein denotes CD40
R215 T274 T280 themeOf CD40,association
R216 T275 T280 themeOf TRAF1,association
R217 T276 T280 themeOf TNFAIP3,association
R218 T277 T280 themeOf c-REL,association

bionlp-st-ge-2016-spacy-parsed

Id Subject Object Predicate Lexical cue
T1246 227-228 . denotes .
T1245 226-227 NNP denotes ]
T1244 225-226 CD denotes 8
T1243 224-225 NN denotes [
T1242 211-223 NN denotes pathogenesis
T1241 208-210 NNP denotes RA
T1240 205-207 IN denotes in
T1239 194-204 NN denotes activation
T1238 188-193 JJ denotes NF-κB
T1237 185-187 IN denotes of
T1236 174-184 NN denotes importance
T1235 170-173 DT denotes the
T1234 160-169 NN denotes highlight
T1233 152-159 JJ denotes further
T1232 150-151 , denotes ,
T1231 145-150 NNP denotes c-REL
T1230 141-144 CC denotes and
T1229 139-140 , denotes ,
T1228 132-139 CD denotes TNFAIP3
T1227 130-131 , denotes ,
T1226 125-130 CD denotes TRAF1
T1225 123-124 , denotes ,
T1224 119-123 NNP denotes CD40
T1223 109-118 VBG denotes including
T1222 107-108 , denotes ,
T1221 97-107 NN denotes signalling
T1220 91-96 JJ denotes NF-κB
T1219 88-90 TO denotes to
T1218 79-87 JJ denotes relevant
T1217 73-78 NNS denotes genes
T1216 65-72 JJ denotes several
T1215 60-64 IN denotes with
T1214 48-59 NN denotes association
T1213 40-47 JJ denotes genetic
T1212 38-39 DT denotes a
T1211 28-37 VBG denotes revealing
T1210 16-27 NNS denotes discoveries
T1209 9-15 JJ denotes recent
T1208 7-8 , denotes ,
T1207 0-7 RB denotes Finally
R991 T1222 T1221 punct ",",signalling
R993 T1223 T1221 prep including,signalling
R994 T1224 T1223 pobj CD40,including
R997 T1225 T1224 punct ",",CD40
R999 T1226 T1224 appos TRAF1,CD40
R1001 T1227 T1224 punct ",",CD40
R1002 T1228 T1224 appos TNFAIP3,CD40
R1003 T1229 T1224 punct ",",CD40
R1005 T1230 T1224 cc and,CD40
R1006 T1231 T1224 conj c-REL,CD40
R1007 T1232 T1231 punct ",",c-REL
R1009 T1233 T1234 advmod further,highlight
R1010 T1234 T1221 appos highlight,signalling
R1012 T1235 T1236 det the,importance
R1013 T1236 T1234 dobj importance,highlight
R1014 T1237 T1236 prep of,importance
R1015 T1238 T1239 amod NF-κB,activation
R1016 T1239 T1237 pobj activation,of
R1017 T1240 T1239 prep in,activation
R1019 T1241 T1243 nmod RA,[
R1020 T1242 T1243 compound pathogenesis,[
R1021 T1243 T1240 pobj [,in
R1023 T1244 T1245 nummod 8,]
R1024 T1245 T1243 appos ],[
R1025 T1246 T1207 punct .,Finally
R1042 T1207 T1207 ROOT Finally,Finally
R1043 T1208 T1210 punct ",",discoveries
R1044 T1209 T1210 amod recent,discoveries
R1045 T1210 T1207 pobj discoveries,Finally
R1046 T1211 T1210 acl revealing,discoveries
R1047 T1212 T1214 det a,association
R1048 T1213 T1214 amod genetic,association
R1049 T1214 T1211 dobj association,revealing
R1050 T1215 T1214 prep with,association
R1051 T1216 T1217 amod several,genes
R1052 T1217 T1215 pobj genes,with
R1053 T1218 T1217 amod relevant,genes
R1054 T1219 T1218 prep to,relevant
R1055 T1220 T1221 amod NF-κB,signalling
R1056 T1221 T1219 pobj signalling,to

DLUT931

Id Subject Object Predicate Lexical cue
T1400 145-150 Protein denotes c-REL
T1399 132-139 Protein denotes TNFAIP3
T1398 125-130 Protein denotes TRAF1
T1397 119-123 Protein denotes CD40

bionlp-st-ge-2016-uniprot

Id Subject Object Predicate Lexical cue
T1278 132-139 http://www.uniprot.org/uniprot/P21580 denotes TNFAIP3
T1277 119-123 http://www.uniprot.org/uniprot/P25942 denotes CD40
T1273 147-150 http://www.uniprot.org/uniprot/Q04864 denotes REL

bionlp-st-ge-2016-test-proteins

Id Subject Object Predicate Lexical cue
T373 145-150 Protein denotes c-REL
T372 132-139 Protein denotes TNFAIP3
T371 125-130 Protein denotes TRAF1
T370 119-123 Protein denotes CD40

2_test

Id Subject Object Predicate Lexical cue
21639951-20192992-4289432 225-226 20192992 denotes 8

pmc-enju-pas

Id Subject Object Predicate Lexical cue
T775 225-226 CD denotes 8
T776 226-227 -RRB- denotes ]
T774 224-225 -LRB- denotes [
T773 211-223 NN denotes pathogenesis
T772 208-210 NN denotes RA
T771 205-207 IN denotes in
T770 194-204 NN denotes activation
T769 188-193 NN denotes NF-κB
T768 185-187 IN denotes of
T767 174-184 NN denotes importance
T766 170-173 DT denotes the
T765 160-169 VB denotes highlight
T764 152-159 RB denotes further
T763 150-151 -COMMA- denotes ,
T762 145-150 NN denotes c-REL
T761 141-144 CC denotes and
T760 139-140 -COMMA- denotes ,
T759 132-139 NN denotes TNFAIP3
T758 130-131 -COMMA- denotes ,
T757 125-130 NN denotes TRAF1
T756 123-124 -COMMA- denotes ,
T755 119-123 NN denotes CD40
T754 109-118 VB denotes including
T753 107-108 -COMMA- denotes ,
T752 97-107 NN denotes signalling
T751 91-96 NN denotes NF-κB
T750 88-90 TO denotes to
T749 79-87 JJ denotes relevant
T748 73-78 NN denotes genes
T747 65-72 JJ denotes several
T746 60-64 IN denotes with
T745 48-59 NN denotes association
T744 40-47 JJ denotes genetic
T743 38-39 DT denotes a
T742 28-37 VB denotes revealing
T741 16-27 NN denotes discoveries
T740 9-15 JJ denotes recent
T739 7-8 -COMMA- denotes ,
T738 0-7 RB denotes Finally
R604 T741 T740 arg1Of discoveries,recent
R605 T741 T742 arg1Of discoveries,revealing
R606 T741 T765 arg1Of discoveries,highlight
R607 T745 T742 arg2Of association,revealing
R608 T745 T743 arg1Of association,a
R609 T745 T744 arg1Of association,genetic
R610 T745 T746 arg1Of association,with
R611 T748 T746 arg2Of genes,with
R612 T748 T747 arg1Of genes,several
R613 T748 T749 arg1Of genes,relevant
R614 T748 T753 arg1Of genes,","
R615 T748 T754 arg1Of genes,including
R616 T749 T750 arg1Of relevant,to
R617 T752 T750 arg2Of signalling,to
R618 T752 T751 arg1Of signalling,NF-κB
R619 T755 T756 arg1Of CD40,","
R620 T756 T758 arg1Of ",",","
R621 T757 T756 arg2Of TRAF1,","
R622 T758 T761 arg1Of ",",and
R623 T759 T758 arg2Of TNFAIP3,","
R624 T761 T754 arg2Of and,including
R625 T761 T760 arg1Of and,","
R626 T762 T761 arg2Of c-REL,and
R627 T765 T738 arg1Of highlight,Finally
R628 T765 T739 arg1Of highlight,","
R629 T765 T763 arg1Of highlight,","
R630 T765 T764 arg1Of highlight,further
R631 T765 T774 arg1Of highlight,[
R632 T767 T765 arg2Of importance,highlight
R633 T767 T766 arg1Of importance,the
R634 T767 T768 arg1Of importance,of
R635 T767 T771 arg1Of importance,in
R636 T770 T768 arg2Of activation,of
R637 T770 T769 arg1Of activation,NF-κB
R638 T773 T771 arg2Of pathogenesis,in
R639 T773 T772 arg1Of pathogenesis,RA
R640 T775 T774 arg2Of 8,[
R641 T776 T774 arg3Of ],[

GO-BP

Id Subject Object Predicate Lexical cue
T798 211-223 http://purl.obolibrary.org/obo/GO_0009405 denotes pathogenesis
T797 97-107 http://purl.obolibrary.org/obo/GO_0023052 denotes signalling
T796 91-107 http://purl.obolibrary.org/obo/GO_0038061 denotes NF-κB signalling
T785 188-204 http://purl.obolibrary.org/obo/GO_0051092 denotes NF-κB activation

sentences

Id Subject Object Predicate Lexical cue
T335 0-228 Sentence denotes Finally, recent discoveries revealing a genetic association with several genes relevant to NF-κB signalling, including CD40, TRAF1, TNFAIP3, and c-REL, further highlight the importance of NF-κB activation in RA pathogenesis [8].
T18 0-228 Sentence denotes Finally, recent discoveries revealing a genetic association with several genes relevant to NF-κB signalling, including CD40, TRAF1, TNFAIP3, and c-REL, further highlight the importance of NF-κB activation in RA pathogenesis [8].

simple1

Id Subject Object Predicate Lexical cue
T831 145-150 Protein denotes c-REL
T830 132-139 Protein denotes TNFAIP3
T829 125-130 Protein denotes TRAF1
T828 119-123 Protein denotes CD40

BioNLP16_DUT

Id Subject Object Predicate Lexical cue
T1527 48-59 Binding denotes association
T1524 145-150 Protein denotes c-REL
T1523 132-139 Protein denotes TNFAIP3
T1522 125-130 Protein denotes TRAF1
T1521 119-123 Protein denotes CD40
R1257 T1523 T1527 themeOf TNFAIP3,association

BioNLP16_Messiy

Id Subject Object Predicate Lexical cue
T1297 145-150 Protein denotes c-REL
T1296 132-139 Protein denotes TNFAIP3
T1295 125-130 Protein denotes TRAF1
T1294 119-123 Protein denotes CD40

bionlp-st-ge-2016-test-ihmc

Id Subject Object Predicate Lexical cue
T1590 185-223 Positive_regulation denotes of NF-κB activation in RA pathogenesis
T1586 38-78 Binding denotes a genetic association with several genes
T1575 208-223 Protein denotes RA pathogenesis
T1566 188-193 Protein denotes NF-κB
T1560 132-139 Protein denotes TNFAIP3
T1547 145-150 Protein denotes c-REL
T1543 119-123 Protein denotes CD40
T1538 60-78 Protein denotes with several genes
T1536 91-108 Protein denotes NF-κB signalling,
T1533 125-130 Protein denotes TRAF1
R1258 T1538 T1586 themeOf with several genes,a genetic association with several genes
R1264 T1566 T1590 themeOf NF-κB,of NF-κB activation in RA pathogenesis

bionlp-st-ge-2016-test-tees

Id Subject Object Predicate Lexical cue
T1381 194-204 Positive_regulation denotes activation
T1380 188-193 Protein denotes NF-κB
T1379 132-139 Protein denotes TNFAIP3
T1378 125-130 Protein denotes TRAF1
T1377 119-123 Protein denotes CD40
T1376 91-96 Protein denotes NF-κB
R1106 T1380 T1381 themeOf NF-κB,activation

test3

Id Subject Object Predicate Lexical cue
T320 145-150 Protein denotes c-REL
T319 132-139 Protein denotes TNFAIP3
T318 125-130 Protein denotes TRAF1
T317 119-123 Protein denotes CD40
T299 145-150 Protein denotes c-REL
T298 132-139 Protein denotes TNFAIP3
T297 125-130 Protein denotes TRAF1
T296 119-123 Protein denotes CD40