PMC:3218875 / 2821-3049 JSONTXT

Annnotations TAB JSON ListView MergeView

    testone

    {"project":"testone","denotations":[{"id":"T280","span":{"begin":48,"end":59},"obj":"Binding"},{"id":"T277","span":{"begin":145,"end":150},"obj":"Protein"},{"id":"T276","span":{"begin":132,"end":139},"obj":"Protein"},{"id":"T275","span":{"begin":125,"end":130},"obj":"Protein"},{"id":"T274","span":{"begin":119,"end":123},"obj":"Protein"}],"relations":[{"id":"R215","pred":"themeOf","subj":"T274","obj":"T280"},{"id":"R216","pred":"themeOf","subj":"T275","obj":"T280"},{"id":"R217","pred":"themeOf","subj":"T276","obj":"T280"},{"id":"R218","pred":"themeOf","subj":"T277","obj":"T280"}],"text":"Finally, recent discoveries revealing a genetic association with several genes relevant to NF-κB signalling, including CD40, TRAF1, TNFAIP3, and c-REL, further highlight the importance of NF-κB activation in RA pathogenesis [8]."}

    bionlp-st-ge-2016-spacy-parsed

    {"project":"bionlp-st-ge-2016-spacy-parsed","denotations":[{"id":"T1246","span":{"begin":227,"end":228},"obj":"."},{"id":"T1245","span":{"begin":226,"end":227},"obj":"NNP"},{"id":"T1244","span":{"begin":225,"end":226},"obj":"CD"},{"id":"T1243","span":{"begin":224,"end":225},"obj":"NN"},{"id":"T1242","span":{"begin":211,"end":223},"obj":"NN"},{"id":"T1241","span":{"begin":208,"end":210},"obj":"NNP"},{"id":"T1240","span":{"begin":205,"end":207},"obj":"IN"},{"id":"T1239","span":{"begin":194,"end":204},"obj":"NN"},{"id":"T1238","span":{"begin":188,"end":193},"obj":"JJ"},{"id":"T1237","span":{"begin":185,"end":187},"obj":"IN"},{"id":"T1236","span":{"begin":174,"end":184},"obj":"NN"},{"id":"T1235","span":{"begin":170,"end":173},"obj":"DT"},{"id":"T1234","span":{"begin":160,"end":169},"obj":"NN"},{"id":"T1233","span":{"begin":152,"end":159},"obj":"JJ"},{"id":"T1232","span":{"begin":150,"end":151},"obj":","},{"id":"T1231","span":{"begin":145,"end":150},"obj":"NNP"},{"id":"T1230","span":{"begin":141,"end":144},"obj":"CC"},{"id":"T1229","span":{"begin":139,"end":140},"obj":","},{"id":"T1228","span":{"begin":132,"end":139},"obj":"CD"},{"id":"T1227","span":{"begin":130,"end":131},"obj":","},{"id":"T1226","span":{"begin":125,"end":130},"obj":"CD"},{"id":"T1225","span":{"begin":123,"end":124},"obj":","},{"id":"T1224","span":{"begin":119,"end":123},"obj":"NNP"},{"id":"T1223","span":{"begin":109,"end":118},"obj":"VBG"},{"id":"T1222","span":{"begin":107,"end":108},"obj":","},{"id":"T1221","span":{"begin":97,"end":107},"obj":"NN"},{"id":"T1220","span":{"begin":91,"end":96},"obj":"JJ"},{"id":"T1219","span":{"begin":88,"end":90},"obj":"TO"},{"id":"T1218","span":{"begin":79,"end":87},"obj":"JJ"},{"id":"T1217","span":{"begin":73,"end":78},"obj":"NNS"},{"id":"T1216","span":{"begin":65,"end":72},"obj":"JJ"},{"id":"T1215","span":{"begin":60,"end":64},"obj":"IN"},{"id":"T1214","span":{"begin":48,"end":59},"obj":"NN"},{"id":"T1213","span":{"begin":40,"end":47},"obj":"JJ"},{"id":"T1212","span":{"begin":38,"end":39},"obj":"DT"},{"id":"T1211","span":{"begin":28,"end":37},"obj":"VBG"},{"id":"T1210","span":{"begin":16,"end":27},"obj":"NNS"},{"id":"T1209","span":{"begin":9,"end":15},"obj":"JJ"},{"id":"T1208","span":{"begin":7,"end":8},"obj":","},{"id":"T1207","span":{"begin":0,"end":7},"obj":"RB"}],"relations":[{"id":"R991","pred":"punct","subj":"T1222","obj":"T1221"},{"id":"R993","pred":"prep","subj":"T1223","obj":"T1221"},{"id":"R994","pred":"pobj","subj":"T1224","obj":"T1223"},{"id":"R997","pred":"punct","subj":"T1225","obj":"T1224"},{"id":"R999","pred":"appos","subj":"T1226","obj":"T1224"},{"id":"R1001","pred":"punct","subj":"T1227","obj":"T1224"},{"id":"R1002","pred":"appos","subj":"T1228","obj":"T1224"},{"id":"R1003","pred":"punct","subj":"T1229","obj":"T1224"},{"id":"R1005","pred":"cc","subj":"T1230","obj":"T1224"},{"id":"R1006","pred":"conj","subj":"T1231","obj":"T1224"},{"id":"R1007","pred":"punct","subj":"T1232","obj":"T1231"},{"id":"R1009","pred":"advmod","subj":"T1233","obj":"T1234"},{"id":"R1010","pred":"appos","subj":"T1234","obj":"T1221"},{"id":"R1012","pred":"det","subj":"T1235","obj":"T1236"},{"id":"R1013","pred":"dobj","subj":"T1236","obj":"T1234"},{"id":"R1014","pred":"prep","subj":"T1237","obj":"T1236"},{"id":"R1015","pred":"amod","subj":"T1238","obj":"T1239"},{"id":"R1016","pred":"pobj","subj":"T1239","obj":"T1237"},{"id":"R1017","pred":"prep","subj":"T1240","obj":"T1239"},{"id":"R1019","pred":"nmod","subj":"T1241","obj":"T1243"},{"id":"R1020","pred":"compound","subj":"T1242","obj":"T1243"},{"id":"R1021","pred":"pobj","subj":"T1243","obj":"T1240"},{"id":"R1023","pred":"nummod","subj":"T1244","obj":"T1245"},{"id":"R1024","pred":"appos","subj":"T1245","obj":"T1243"},{"id":"R1025","pred":"punct","subj":"T1246","obj":"T1207"},{"id":"R1042","pred":"ROOT","subj":"T1207","obj":"T1207"},{"id":"R1043","pred":"punct","subj":"T1208","obj":"T1210"},{"id":"R1044","pred":"amod","subj":"T1209","obj":"T1210"},{"id":"R1045","pred":"pobj","subj":"T1210","obj":"T1207"},{"id":"R1046","pred":"acl","subj":"T1211","obj":"T1210"},{"id":"R1047","pred":"det","subj":"T1212","obj":"T1214"},{"id":"R1048","pred":"amod","subj":"T1213","obj":"T1214"},{"id":"R1049","pred":"dobj","subj":"T1214","obj":"T1211"},{"id":"R1050","pred":"prep","subj":"T1215","obj":"T1214"},{"id":"R1051","pred":"amod","subj":"T1216","obj":"T1217"},{"id":"R1052","pred":"pobj","subj":"T1217","obj":"T1215"},{"id":"R1053","pred":"amod","subj":"T1218","obj":"T1217"},{"id":"R1054","pred":"prep","subj":"T1219","obj":"T1218"},{"id":"R1055","pred":"amod","subj":"T1220","obj":"T1221"},{"id":"R1056","pred":"pobj","subj":"T1221","obj":"T1219"}],"text":"Finally, recent discoveries revealing a genetic association with several genes relevant to NF-κB signalling, including CD40, TRAF1, TNFAIP3, and c-REL, further highlight the importance of NF-κB activation in RA pathogenesis [8]."}

    DLUT931

    {"project":"DLUT931","denotations":[{"id":"T1400","span":{"begin":145,"end":150},"obj":"Protein"},{"id":"T1399","span":{"begin":132,"end":139},"obj":"Protein"},{"id":"T1398","span":{"begin":125,"end":130},"obj":"Protein"},{"id":"T1397","span":{"begin":119,"end":123},"obj":"Protein"}],"text":"Finally, recent discoveries revealing a genetic association with several genes relevant to NF-κB signalling, including CD40, TRAF1, TNFAIP3, and c-REL, further highlight the importance of NF-κB activation in RA pathogenesis [8]."}

    bionlp-st-ge-2016-uniprot

    {"project":"bionlp-st-ge-2016-uniprot","denotations":[{"id":"T1278","span":{"begin":132,"end":139},"obj":"http://www.uniprot.org/uniprot/P21580"},{"id":"T1277","span":{"begin":119,"end":123},"obj":"http://www.uniprot.org/uniprot/P25942"},{"id":"T1273","span":{"begin":147,"end":150},"obj":"http://www.uniprot.org/uniprot/Q04864"}],"namespaces":[{"prefix":"_base","uri":"http://www.uniprot.org/uniprot/"}],"text":"Finally, recent discoveries revealing a genetic association with several genes relevant to NF-κB signalling, including CD40, TRAF1, TNFAIP3, and c-REL, further highlight the importance of NF-κB activation in RA pathogenesis [8]."}

    bionlp-st-ge-2016-test-proteins

    {"project":"bionlp-st-ge-2016-test-proteins","denotations":[{"id":"T373","span":{"begin":145,"end":150},"obj":"Protein"},{"id":"T372","span":{"begin":132,"end":139},"obj":"Protein"},{"id":"T371","span":{"begin":125,"end":130},"obj":"Protein"},{"id":"T370","span":{"begin":119,"end":123},"obj":"Protein"}],"namespaces":[{"prefix":"_base","uri":"http://bionlp.dbcls.jp/ontology/ge.owl#"}],"text":"Finally, recent discoveries revealing a genetic association with several genes relevant to NF-κB signalling, including CD40, TRAF1, TNFAIP3, and c-REL, further highlight the importance of NF-κB activation in RA pathogenesis [8]."}

    2_test

    {"project":"2_test","denotations":[{"id":"21639951-20192992-4289432","span":{"begin":225,"end":226},"obj":"20192992"}],"text":"Finally, recent discoveries revealing a genetic association with several genes relevant to NF-κB signalling, including CD40, TRAF1, TNFAIP3, and c-REL, further highlight the importance of NF-κB activation in RA pathogenesis [8]."}

    pmc-enju-pas

    {"project":"pmc-enju-pas","denotations":[{"id":"T775","span":{"begin":225,"end":226},"obj":"CD"},{"id":"T776","span":{"begin":226,"end":227},"obj":"-RRB-"},{"id":"T774","span":{"begin":224,"end":225},"obj":"-LRB-"},{"id":"T773","span":{"begin":211,"end":223},"obj":"NN"},{"id":"T772","span":{"begin":208,"end":210},"obj":"NN"},{"id":"T771","span":{"begin":205,"end":207},"obj":"IN"},{"id":"T770","span":{"begin":194,"end":204},"obj":"NN"},{"id":"T769","span":{"begin":188,"end":193},"obj":"NN"},{"id":"T768","span":{"begin":185,"end":187},"obj":"IN"},{"id":"T767","span":{"begin":174,"end":184},"obj":"NN"},{"id":"T766","span":{"begin":170,"end":173},"obj":"DT"},{"id":"T765","span":{"begin":160,"end":169},"obj":"VB"},{"id":"T764","span":{"begin":152,"end":159},"obj":"RB"},{"id":"T763","span":{"begin":150,"end":151},"obj":"-COMMA-"},{"id":"T762","span":{"begin":145,"end":150},"obj":"NN"},{"id":"T761","span":{"begin":141,"end":144},"obj":"CC"},{"id":"T760","span":{"begin":139,"end":140},"obj":"-COMMA-"},{"id":"T759","span":{"begin":132,"end":139},"obj":"NN"},{"id":"T758","span":{"begin":130,"end":131},"obj":"-COMMA-"},{"id":"T757","span":{"begin":125,"end":130},"obj":"NN"},{"id":"T756","span":{"begin":123,"end":124},"obj":"-COMMA-"},{"id":"T755","span":{"begin":119,"end":123},"obj":"NN"},{"id":"T754","span":{"begin":109,"end":118},"obj":"VB"},{"id":"T753","span":{"begin":107,"end":108},"obj":"-COMMA-"},{"id":"T752","span":{"begin":97,"end":107},"obj":"NN"},{"id":"T751","span":{"begin":91,"end":96},"obj":"NN"},{"id":"T750","span":{"begin":88,"end":90},"obj":"TO"},{"id":"T749","span":{"begin":79,"end":87},"obj":"JJ"},{"id":"T748","span":{"begin":73,"end":78},"obj":"NN"},{"id":"T747","span":{"begin":65,"end":72},"obj":"JJ"},{"id":"T746","span":{"begin":60,"end":64},"obj":"IN"},{"id":"T745","span":{"begin":48,"end":59},"obj":"NN"},{"id":"T744","span":{"begin":40,"end":47},"obj":"JJ"},{"id":"T743","span":{"begin":38,"end":39},"obj":"DT"},{"id":"T742","span":{"begin":28,"end":37},"obj":"VB"},{"id":"T741","span":{"begin":16,"end":27},"obj":"NN"},{"id":"T740","span":{"begin":9,"end":15},"obj":"JJ"},{"id":"T739","span":{"begin":7,"end":8},"obj":"-COMMA-"},{"id":"T738","span":{"begin":0,"end":7},"obj":"RB"}],"relations":[{"id":"R604","pred":"arg1Of","subj":"T741","obj":"T740"},{"id":"R605","pred":"arg1Of","subj":"T741","obj":"T742"},{"id":"R606","pred":"arg1Of","subj":"T741","obj":"T765"},{"id":"R607","pred":"arg2Of","subj":"T745","obj":"T742"},{"id":"R608","pred":"arg1Of","subj":"T745","obj":"T743"},{"id":"R609","pred":"arg1Of","subj":"T745","obj":"T744"},{"id":"R610","pred":"arg1Of","subj":"T745","obj":"T746"},{"id":"R611","pred":"arg2Of","subj":"T748","obj":"T746"},{"id":"R612","pred":"arg1Of","subj":"T748","obj":"T747"},{"id":"R613","pred":"arg1Of","subj":"T748","obj":"T749"},{"id":"R614","pred":"arg1Of","subj":"T748","obj":"T753"},{"id":"R615","pred":"arg1Of","subj":"T748","obj":"T754"},{"id":"R616","pred":"arg1Of","subj":"T749","obj":"T750"},{"id":"R617","pred":"arg2Of","subj":"T752","obj":"T750"},{"id":"R618","pred":"arg1Of","subj":"T752","obj":"T751"},{"id":"R619","pred":"arg1Of","subj":"T755","obj":"T756"},{"id":"R620","pred":"arg1Of","subj":"T756","obj":"T758"},{"id":"R621","pred":"arg2Of","subj":"T757","obj":"T756"},{"id":"R622","pred":"arg1Of","subj":"T758","obj":"T761"},{"id":"R623","pred":"arg2Of","subj":"T759","obj":"T758"},{"id":"R624","pred":"arg2Of","subj":"T761","obj":"T754"},{"id":"R625","pred":"arg1Of","subj":"T761","obj":"T760"},{"id":"R626","pred":"arg2Of","subj":"T762","obj":"T761"},{"id":"R627","pred":"arg1Of","subj":"T765","obj":"T738"},{"id":"R628","pred":"arg1Of","subj":"T765","obj":"T739"},{"id":"R629","pred":"arg1Of","subj":"T765","obj":"T763"},{"id":"R630","pred":"arg1Of","subj":"T765","obj":"T764"},{"id":"R631","pred":"arg1Of","subj":"T765","obj":"T774"},{"id":"R632","pred":"arg2Of","subj":"T767","obj":"T765"},{"id":"R633","pred":"arg1Of","subj":"T767","obj":"T766"},{"id":"R634","pred":"arg1Of","subj":"T767","obj":"T768"},{"id":"R635","pred":"arg1Of","subj":"T767","obj":"T771"},{"id":"R636","pred":"arg2Of","subj":"T770","obj":"T768"},{"id":"R637","pred":"arg1Of","subj":"T770","obj":"T769"},{"id":"R638","pred":"arg2Of","subj":"T773","obj":"T771"},{"id":"R639","pred":"arg1Of","subj":"T773","obj":"T772"},{"id":"R640","pred":"arg2Of","subj":"T775","obj":"T774"},{"id":"R641","pred":"arg3Of","subj":"T776","obj":"T774"}],"namespaces":[{"prefix":"_base","uri":"http://kmcs.nii.ac.jp/enju/"}],"text":"Finally, recent discoveries revealing a genetic association with several genes relevant to NF-κB signalling, including CD40, TRAF1, TNFAIP3, and c-REL, further highlight the importance of NF-κB activation in RA pathogenesis [8]."}

    GO-BP

    {"project":"GO-BP","denotations":[{"id":"T798","span":{"begin":211,"end":223},"obj":"http://purl.obolibrary.org/obo/GO_0009405"},{"id":"T797","span":{"begin":97,"end":107},"obj":"http://purl.obolibrary.org/obo/GO_0023052"},{"id":"T796","span":{"begin":91,"end":107},"obj":"http://purl.obolibrary.org/obo/GO_0038061"},{"id":"T785","span":{"begin":188,"end":204},"obj":"http://purl.obolibrary.org/obo/GO_0051092"}],"text":"Finally, recent discoveries revealing a genetic association with several genes relevant to NF-κB signalling, including CD40, TRAF1, TNFAIP3, and c-REL, further highlight the importance of NF-κB activation in RA pathogenesis [8]."}

    sentences

    {"project":"sentences","denotations":[{"id":"T335","span":{"begin":0,"end":228},"obj":"Sentence"},{"id":"T18","span":{"begin":0,"end":228},"obj":"Sentence"}],"namespaces":[{"prefix":"_base","uri":"http://pubannotation.org/ontology/tao.owl#"}],"text":"Finally, recent discoveries revealing a genetic association with several genes relevant to NF-κB signalling, including CD40, TRAF1, TNFAIP3, and c-REL, further highlight the importance of NF-κB activation in RA pathogenesis [8]."}

    simple1

    {"project":"simple1","denotations":[{"id":"T831","span":{"begin":145,"end":150},"obj":"Protein"},{"id":"T830","span":{"begin":132,"end":139},"obj":"Protein"},{"id":"T829","span":{"begin":125,"end":130},"obj":"Protein"},{"id":"T828","span":{"begin":119,"end":123},"obj":"Protein"}],"text":"Finally, recent discoveries revealing a genetic association with several genes relevant to NF-κB signalling, including CD40, TRAF1, TNFAIP3, and c-REL, further highlight the importance of NF-κB activation in RA pathogenesis [8]."}

    BioNLP16_DUT

    {"project":"BioNLP16_DUT","denotations":[{"id":"T1527","span":{"begin":48,"end":59},"obj":"Binding"},{"id":"T1524","span":{"begin":145,"end":150},"obj":"Protein"},{"id":"T1523","span":{"begin":132,"end":139},"obj":"Protein"},{"id":"T1522","span":{"begin":125,"end":130},"obj":"Protein"},{"id":"T1521","span":{"begin":119,"end":123},"obj":"Protein"}],"relations":[{"id":"R1257","pred":"themeOf","subj":"T1523","obj":"T1527"}],"text":"Finally, recent discoveries revealing a genetic association with several genes relevant to NF-κB signalling, including CD40, TRAF1, TNFAIP3, and c-REL, further highlight the importance of NF-κB activation in RA pathogenesis [8]."}

    BioNLP16_Messiy

    {"project":"BioNLP16_Messiy","denotations":[{"id":"T1297","span":{"begin":145,"end":150},"obj":"Protein"},{"id":"T1296","span":{"begin":132,"end":139},"obj":"Protein"},{"id":"T1295","span":{"begin":125,"end":130},"obj":"Protein"},{"id":"T1294","span":{"begin":119,"end":123},"obj":"Protein"}],"text":"Finally, recent discoveries revealing a genetic association with several genes relevant to NF-κB signalling, including CD40, TRAF1, TNFAIP3, and c-REL, further highlight the importance of NF-κB activation in RA pathogenesis [8]."}

    bionlp-st-ge-2016-test-ihmc

    {"project":"bionlp-st-ge-2016-test-ihmc","denotations":[{"id":"T1590","span":{"begin":185,"end":223},"obj":"Positive_regulation"},{"id":"T1586","span":{"begin":38,"end":78},"obj":"Binding"},{"id":"T1575","span":{"begin":208,"end":223},"obj":"Protein"},{"id":"T1566","span":{"begin":188,"end":193},"obj":"Protein"},{"id":"T1560","span":{"begin":132,"end":139},"obj":"Protein"},{"id":"T1547","span":{"begin":145,"end":150},"obj":"Protein"},{"id":"T1543","span":{"begin":119,"end":123},"obj":"Protein"},{"id":"T1538","span":{"begin":60,"end":78},"obj":"Protein"},{"id":"T1536","span":{"begin":91,"end":108},"obj":"Protein"},{"id":"T1533","span":{"begin":125,"end":130},"obj":"Protein"}],"relations":[{"id":"R1258","pred":"themeOf","subj":"T1538","obj":"T1586"},{"id":"R1264","pred":"themeOf","subj":"T1566","obj":"T1590"}],"text":"Finally, recent discoveries revealing a genetic association with several genes relevant to NF-κB signalling, including CD40, TRAF1, TNFAIP3, and c-REL, further highlight the importance of NF-κB activation in RA pathogenesis [8]."}

    bionlp-st-ge-2016-test-tees

    {"project":"bionlp-st-ge-2016-test-tees","denotations":[{"id":"T1381","span":{"begin":194,"end":204},"obj":"Positive_regulation"},{"id":"T1380","span":{"begin":188,"end":193},"obj":"Protein"},{"id":"T1379","span":{"begin":132,"end":139},"obj":"Protein"},{"id":"T1378","span":{"begin":125,"end":130},"obj":"Protein"},{"id":"T1377","span":{"begin":119,"end":123},"obj":"Protein"},{"id":"T1376","span":{"begin":91,"end":96},"obj":"Protein"}],"relations":[{"id":"R1106","pred":"themeOf","subj":"T1380","obj":"T1381"}],"text":"Finally, recent discoveries revealing a genetic association with several genes relevant to NF-κB signalling, including CD40, TRAF1, TNFAIP3, and c-REL, further highlight the importance of NF-κB activation in RA pathogenesis [8]."}

    test3

    {"project":"test3","denotations":[{"id":"T320","span":{"begin":145,"end":150},"obj":"Protein"},{"id":"T319","span":{"begin":132,"end":139},"obj":"Protein"},{"id":"T318","span":{"begin":125,"end":130},"obj":"Protein"},{"id":"T317","span":{"begin":119,"end":123},"obj":"Protein"},{"id":"T299","span":{"begin":145,"end":150},"obj":"Protein"},{"id":"T298","span":{"begin":132,"end":139},"obj":"Protein"},{"id":"T297","span":{"begin":125,"end":130},"obj":"Protein"},{"id":"T296","span":{"begin":119,"end":123},"obj":"Protein"}],"text":"Finally, recent discoveries revealing a genetic association with several genes relevant to NF-κB signalling, including CD40, TRAF1, TNFAIP3, and c-REL, further highlight the importance of NF-κB activation in RA pathogenesis [8]."}