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PMC:3148254 / 4896-5174 JSONTXT

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bionlp-st-ge-2016-reference

Id Subject Object Predicate Lexical cue
T2812 29-33 Protein denotes HOIP
T2813 34-43 Negative_regulation denotes deficient
T2814 65-75 Negative_regulation denotes disruption
T2815 79-84 Protein denotes Rnf31
T2816 104-108 Protein denotes HOIP
T2817 153-157 Protein denotes HOIP
T2818 161-170 Binding denotes recruited
R2101 T2812 T2813 themeOf HOIP,deficient
R2102 T2815 T2814 themeOf Rnf31,disruption
R2103 T2816 T2815 equivalentTo HOIP,Rnf31
R2104 T2817 T2818 themeOf HOIP,recruited

bionlp-st-ge-2016-reference-tees

Id Subject Object Predicate Lexical cue
T3953 79-84 Protein denotes Rnf31
T3954 65-75 Transcription denotes disruption
T3955 178-182 Protein denotes CD40
R3082 T3953 T3954 themeOf Rnf31,disruption

events-check-again

Id Subject Object Predicate Lexical cue
T3983 29-33 Protein denotes HOIP
T3984 34-43 Negative_regulation denotes deficient
T3985 65-75 Negative_regulation denotes disruption
T3986 79-84 Protein denotes Rnf31
T3987 104-108 Protein denotes HOIP
T3988 153-157 Protein denotes HOIP
T3989 161-170 Binding denotes recruited
R3100 T3983 T3984 themeOf HOIP,deficient
R3102 T3986 T3985 themeOf Rnf31,disruption
R3104 T3987 T3986 equivalentTo HOIP,Rnf31
R3105 T3988 T3989 themeOf HOIP,recruited

pmc-enju-pas

Id Subject Object Predicate Lexical cue
T3341 15-25 NN denotes Generation
T3342 26-28 IN denotes of
T3343 29-43 JJ denotes HOIP-deficient
T3344 44-45 NN denotes B
T3345 46-51 NN denotes cells
T3346 52-55 IN denotes via
T3347 56-64 VB denotes targeted
T3348 65-75 NN denotes disruption
T3349 76-78 IN denotes of
T3350 79-84 NN denotes Rnf31
T3351 84-85 -COMMA- denotes ,
T3352 86-89 DT denotes the
T3353 90-94 NN denotes gene
T3354 95-103 VB denotes encoding
T3355 104-108 NN denotes HOIP
T3356 109-111 IN denotes In
T3357 112-115 PRP-DOLLAR- denotes our
T3358 116-124 JJ denotes previous
T3359 125-130 NN denotes study
T3360 130-131 -COMMA- denotes ,
T3361 132-134 PRP denotes we
T3362 135-147 VB denotes demonstrated
T3363 148-152 IN denotes that
T3364 153-157 NN denotes HOIP
T3365 158-160 VB denotes is
T3366 161-170 VB denotes recruited
T3367 171-173 TO denotes to
T3368 174-177 DT denotes the
T3369 178-182 NN denotes CD40
T3370 183-192 NN denotes signaling
T3371 193-200 NN denotes complex
T3372 201-203 IN denotes in
T3373 204-207 CD denotes two
T3374 208-213 NN denotes mouse
T3375 214-215 NN denotes B
T3376 216-220 NN denotes cell
T3377 221-226 NN denotes lines
T3378 227-228 -LRB- denotes [
T3379 228-229 CD denotes 6
T3380 229-230 -RRB- denotes ]
T3381 232-239 JJ denotes Similar
T3382 240-247 NN denotes results
T3383 248-252 VB denotes were
T3384 253-261 VB denotes obtained
T3385 262-266 IN denotes with
T3386 267-272 NN denotes mouse
R2586 T3341 T3342 arg1Of Generation,of
R2587 T3341 T3346 arg1Of Generation,via
R2588 T3345 T3342 arg2Of cells,of
R2589 T3345 T3343 arg1Of cells,HOIP-deficient
R2590 T3345 T3344 arg1Of cells,B
R2591 T3348 T3346 arg2Of disruption,via
R2592 T3348 T3347 arg2Of disruption,targeted
R2593 T3348 T3349 arg1Of disruption,of
R2594 T3350 T3349 arg2Of Rnf31,of
R2595 T3350 T3351 arg1Of Rnf31,","
R2596 T3353 T3351 arg2Of gene,","
R2597 T3353 T3352 arg1Of gene,the
R2598 T3353 T3354 arg1Of gene,encoding
R2599 T3355 T3354 arg2Of HOIP,encoding
R2600 T3359 T3356 arg2Of study,In
R2601 T3359 T3357 arg1Of study,our
R2602 T3359 T3358 arg1Of study,previous
R2603 T3361 T3362 arg1Of we,demonstrated
R2604 T3362 T3356 arg1Of demonstrated,In
R2605 T3362 T3360 arg1Of demonstrated,","
R2606 T3364 T3365 arg1Of HOIP,is
R2607 T3364 T3366 arg2Of HOIP,recruited
R2608 T3366 T3362 arg2Of recruited,demonstrated
R2609 T3366 T3363 arg1Of recruited,that
R2610 T3366 T3365 arg2Of recruited,is
R2611 T3366 T3367 arg1Of recruited,to
R2612 T3366 T3372 arg1Of recruited,in
R2613 T3366 T3378 arg1Of recruited,[
R2614 T3371 T3367 arg2Of complex,to
R2615 T3371 T3368 arg1Of complex,the
R2616 T3371 T3369 arg1Of complex,CD40
R2617 T3371 T3370 arg1Of complex,signaling
R2618 T3377 T3372 arg2Of lines,in
R2619 T3377 T3373 arg1Of lines,two
R2620 T3377 T3374 arg1Of lines,mouse
R2621 T3377 T3375 arg1Of lines,B
R2622 T3377 T3376 arg1Of lines,cell
R2623 T3379 T3378 arg2Of 6,[
R2624 T3380 T3378 arg3Of ],[
R2625 T3382 T3381 arg1Of results,Similar
R2626 T3382 T3383 arg1Of results,were
R2627 T3382 T3384 arg2Of results,obtained
R2628 T3384 T3383 arg2Of obtained,were
R2629 T3384 T3385 arg1Of obtained,with

2_test

Id Subject Object Predicate Lexical cue
21829693-20614026-89653758 228-229 20614026 denotes 6
T45718 228-229 20614026 denotes 6

bionlp-st-ge-2016-spacy-parsed

Id Subject Object Predicate Lexical cue
T1724 3-4 . denotes .
T2880 15-25 NNP denotes Generation
T2881 26-28 IN denotes of
T2882 29-43 NNP denotes HOIP-deficient
T2883 44-45 NNP denotes B
T2884 46-51 NNS denotes cells
T2885 52-55 IN denotes via
T2886 56-64 JJ denotes targeted
T2887 65-75 NN denotes disruption
T2888 76-78 IN denotes of
T2889 79-84 NNP denotes Rnf31
T2890 84-85 , denotes ,
T2891 86-89 DT denotes the
T2892 90-94 NN denotes gene
T2893 95-103 VBG denotes encoding
T2894 104-108 NNP denotes HOIP
T2895 109-111 IN denotes In
T2896 112-115 PRP$ denotes our
T2897 116-124 JJ denotes previous
T2898 125-130 NN denotes study
T2899 130-131 , denotes ,
T2900 132-134 PRP denotes we
T2901 135-147 VBD denotes demonstrated
T2902 148-152 IN denotes that
T2903 153-157 NNP denotes HOIP
T2904 158-160 VBZ denotes is
T2905 161-170 VBN denotes recruited
T2906 171-173 TO denotes to
T2907 174-177 DT denotes the
T2908 178-182 NNP denotes CD40
T2909 183-192 VBG denotes signaling
T2910 193-200 JJ denotes complex
T2911 201-203 IN denotes in
T2912 204-207 CD denotes two
T2913 208-213 NN denotes mouse
T2914 214-215 NNP denotes B
T2915 216-220 NN denotes cell
T2916 221-226 NNS denotes lines
T2917 227-228 VBP denotes [
T2918 228-229 CD denotes 6
T2919 229-230 NNP denotes ]
T2920 230-231 . denotes .
T2921 232-239 JJ denotes Similar
T2922 240-247 NNS denotes results
T2923 248-252 VBD denotes were
T2924 253-261 VBN denotes obtained
T2925 262-266 IN denotes with
T2926 267-272 NN denotes mouse
R2125 T2880 T2880 ROOT Generation,Generation
R2126 T2881 T2880 prep of,Generation
R2127 T2882 T2883 compound HOIP-deficient,B
R2128 T2883 T2884 compound B,cells
R2129 T2884 T2881 pobj cells,of
R2130 T2885 T2880 prep via,Generation
R2131 T2886 T2887 amod targeted,disruption
R2132 T2887 T2885 pobj disruption,via
R2133 T2888 T2887 prep of,disruption
R2134 T2889 T2888 pobj Rnf31,of
R2135 T2890 T2889 punct ",",Rnf31
R2136 T2891 T2892 det the,gene
R2137 T2892 T2889 appos gene,Rnf31
R2138 T2893 T2892 acl encoding,gene
R2139 T2894 T2893 dobj HOIP,encoding
R2140 T2895 T2901 prep In,demonstrated
R2141 T2896 T2898 poss our,study
R2142 T2897 T2898 amod previous,study
R2143 T2898 T2895 pobj study,In
R2144 T2899 T2901 punct ",",demonstrated
R2145 T2900 T2901 nsubj we,demonstrated
R2146 T2901 T2901 ROOT demonstrated,demonstrated
R2147 T2902 T2905 mark that,recruited
R2148 T2903 T2905 nsubjpass HOIP,recruited
R2149 T2904 T2905 auxpass is,recruited
R2150 T2905 T2901 ccomp recruited,demonstrated
R2151 T2906 T2905 prep to,recruited
R2152 T2907 T2908 det the,CD40
R2153 T2908 T2909 nsubj CD40,signaling
R2154 T2909 T2906 pcomp signaling,to
R2155 T2910 T2909 dobj complex,signaling
R2156 T2911 T2909 prep in,signaling
R2157 T2912 T2916 nummod two,lines
R2158 T2913 T2915 compound mouse,cell
R2159 T2914 T2915 compound B,cell
R2160 T2915 T2916 compound cell,lines
R2161 T2916 T2911 pobj lines,in
R2162 T2917 T2906 pobj [,to
R2163 T2918 T2919 nummod 6,]
R2164 T2919 T2906 pobj ],to
R2165 T2920 T2901 punct .,demonstrated
R2166 T2921 T2922 amod Similar,results
R2167 T2922 T2924 nsubjpass results,obtained
R2168 T2923 T2924 auxpass were,obtained
R2169 T2924 T2924 ROOT obtained,obtained
R2170 T2925 T2924 prep with,obtained

GO-BP

Id Subject Object Predicate Lexical cue
T3835 183-192 http://purl.obolibrary.org/obo/GO_0023052 denotes signaling

GO-CC

Id Subject Object Predicate Lexical cue
T3841 46-51 http://purl.obolibrary.org/obo/GO_0005623 denotes cells

sentences

Id Subject Object Predicate Lexical cue
T2863 15-108 Sentence denotes Generation of HOIP-deficient B cells via targeted disruption of Rnf31, the gene encoding HOIP
T2864 109-231 Sentence denotes In our previous study, we demonstrated that HOIP is recruited to the CD40 signaling complex in two mouse B cell lines [6].
T34 6-13 Sentence denotes Results
T35 15-108 Sentence denotes Generation of HOIP-deficient B cells via targeted disruption of Rnf31, the gene encoding HOIP
T36 109-231 Sentence denotes In our previous study, we demonstrated that HOIP is recruited to the CD40 signaling complex in two mouse B cell lines [6].

bionlp-st-ge-2016-uniprot

Id Subject Object Predicate Lexical cue
T3782 29-33 Q96EP0 denotes HOIP
T3783 79-84 Q96EP0 denotes Rnf31
T3784 104-108 Q96EP0 denotes HOIP
T3785 153-157 Q96EP0 denotes HOIP
T3786 178-182 P25942 denotes CD40

test2

Id Subject Object Predicate Lexical cue
T2762 29-33 Protein denotes HOIP
T2763 34-43 Negative_regulation denotes deficient
T2764 65-75 Negative_regulation denotes disruption
T2765 79-84 Protein denotes Rnf31
T2766 104-108 Protein denotes HOIP
T2767 153-157 Protein denotes HOIP
T2768 161-170 Binding denotes recruited
R2078 T2762 T2763 themeOf HOIP,deficient
R2079 T2765 T2764 themeOf Rnf31,disruption
R2080 T2766 T2765 equivalentTo HOIP,Rnf31
R2081 T2767 T2768 themeOf HOIP,recruited