PMC:3148254 / 4896-5174
Annnotations
bionlp-st-ge-2016-reference
{"project":"bionlp-st-ge-2016-reference","denotations":[{"id":"T2812","span":{"begin":29,"end":33},"obj":"Protein"},{"id":"T2813","span":{"begin":34,"end":43},"obj":"Negative_regulation"},{"id":"T2814","span":{"begin":65,"end":75},"obj":"Negative_regulation"},{"id":"T2815","span":{"begin":79,"end":84},"obj":"Protein"},{"id":"T2816","span":{"begin":104,"end":108},"obj":"Protein"},{"id":"T2817","span":{"begin":153,"end":157},"obj":"Protein"},{"id":"T2818","span":{"begin":161,"end":170},"obj":"Binding"}],"relations":[{"id":"R2101","pred":"themeOf","subj":"T2812","obj":"T2813"},{"id":"R2102","pred":"themeOf","subj":"T2815","obj":"T2814"},{"id":"R2103","pred":"equivalentTo","subj":"T2816","obj":"T2815"},{"id":"R2104","pred":"themeOf","subj":"T2817","obj":"T2818"}],"namespaces":[{"prefix":"_base","uri":"http://bionlp.dbcls.jp/ontology/ge.owl#"}],"text":"ent.\n\nResults\n\nGeneration of HOIP-deficient B cells via targeted disruption of Rnf31, the gene encoding HOIP\nIn our previous study, we demonstrated that HOIP is recruited to the CD40 signaling complex in two mouse B cell lines [6]. Similar results were obtained with mouse splen"}
bionlp-st-ge-2016-reference-tees
{"project":"bionlp-st-ge-2016-reference-tees","denotations":[{"id":"T3953","span":{"begin":79,"end":84},"obj":"Protein"},{"id":"T3954","span":{"begin":65,"end":75},"obj":"Transcription"},{"id":"T3955","span":{"begin":178,"end":182},"obj":"Protein"}],"relations":[{"id":"R3082","pred":"themeOf","subj":"T3953","obj":"T3954"}],"text":"ent.\n\nResults\n\nGeneration of HOIP-deficient B cells via targeted disruption of Rnf31, the gene encoding HOIP\nIn our previous study, we demonstrated that HOIP is recruited to the CD40 signaling complex in two mouse B cell lines [6]. Similar results were obtained with mouse splen"}
events-check-again
{"project":"events-check-again","denotations":[{"id":"T3983","span":{"begin":29,"end":33},"obj":"Protein"},{"id":"T3984","span":{"begin":34,"end":43},"obj":"Negative_regulation"},{"id":"T3985","span":{"begin":65,"end":75},"obj":"Negative_regulation"},{"id":"T3986","span":{"begin":79,"end":84},"obj":"Protein"},{"id":"T3987","span":{"begin":104,"end":108},"obj":"Protein"},{"id":"T3988","span":{"begin":153,"end":157},"obj":"Protein"},{"id":"T3989","span":{"begin":161,"end":170},"obj":"Binding"}],"relations":[{"id":"R3100","pred":"themeOf","subj":"T3983","obj":"T3984"},{"id":"R3102","pred":"themeOf","subj":"T3986","obj":"T3985"},{"id":"R3104","pred":"equivalentTo","subj":"T3987","obj":"T3986"},{"id":"R3105","pred":"themeOf","subj":"T3988","obj":"T3989"}],"text":"ent.\n\nResults\n\nGeneration of HOIP-deficient B cells via targeted disruption of Rnf31, the gene encoding HOIP\nIn our previous study, we demonstrated that HOIP is recruited to the CD40 signaling complex in two mouse B cell lines [6]. Similar results were obtained with mouse splen"}
pmc-enju-pas
{"project":"pmc-enju-pas","denotations":[{"id":"T3341","span":{"begin":15,"end":25},"obj":"NN"},{"id":"T3342","span":{"begin":26,"end":28},"obj":"IN"},{"id":"T3343","span":{"begin":29,"end":43},"obj":"JJ"},{"id":"T3344","span":{"begin":44,"end":45},"obj":"NN"},{"id":"T3345","span":{"begin":46,"end":51},"obj":"NN"},{"id":"T3346","span":{"begin":52,"end":55},"obj":"IN"},{"id":"T3347","span":{"begin":56,"end":64},"obj":"VB"},{"id":"T3348","span":{"begin":65,"end":75},"obj":"NN"},{"id":"T3349","span":{"begin":76,"end":78},"obj":"IN"},{"id":"T3350","span":{"begin":79,"end":84},"obj":"NN"},{"id":"T3351","span":{"begin":84,"end":85},"obj":"-COMMA-"},{"id":"T3352","span":{"begin":86,"end":89},"obj":"DT"},{"id":"T3353","span":{"begin":90,"end":94},"obj":"NN"},{"id":"T3354","span":{"begin":95,"end":103},"obj":"VB"},{"id":"T3355","span":{"begin":104,"end":108},"obj":"NN"},{"id":"T3356","span":{"begin":109,"end":111},"obj":"IN"},{"id":"T3357","span":{"begin":112,"end":115},"obj":"PRP-DOLLAR-"},{"id":"T3358","span":{"begin":116,"end":124},"obj":"JJ"},{"id":"T3359","span":{"begin":125,"end":130},"obj":"NN"},{"id":"T3360","span":{"begin":130,"end":131},"obj":"-COMMA-"},{"id":"T3361","span":{"begin":132,"end":134},"obj":"PRP"},{"id":"T3362","span":{"begin":135,"end":147},"obj":"VB"},{"id":"T3363","span":{"begin":148,"end":152},"obj":"IN"},{"id":"T3364","span":{"begin":153,"end":157},"obj":"NN"},{"id":"T3365","span":{"begin":158,"end":160},"obj":"VB"},{"id":"T3366","span":{"begin":161,"end":170},"obj":"VB"},{"id":"T3367","span":{"begin":171,"end":173},"obj":"TO"},{"id":"T3368","span":{"begin":174,"end":177},"obj":"DT"},{"id":"T3369","span":{"begin":178,"end":182},"obj":"NN"},{"id":"T3370","span":{"begin":183,"end":192},"obj":"NN"},{"id":"T3371","span":{"begin":193,"end":200},"obj":"NN"},{"id":"T3372","span":{"begin":201,"end":203},"obj":"IN"},{"id":"T3373","span":{"begin":204,"end":207},"obj":"CD"},{"id":"T3374","span":{"begin":208,"end":213},"obj":"NN"},{"id":"T3375","span":{"begin":214,"end":215},"obj":"NN"},{"id":"T3376","span":{"begin":216,"end":220},"obj":"NN"},{"id":"T3377","span":{"begin":221,"end":226},"obj":"NN"},{"id":"T3378","span":{"begin":227,"end":228},"obj":"-LRB-"},{"id":"T3379","span":{"begin":228,"end":229},"obj":"CD"},{"id":"T3380","span":{"begin":229,"end":230},"obj":"-RRB-"},{"id":"T3381","span":{"begin":232,"end":239},"obj":"JJ"},{"id":"T3382","span":{"begin":240,"end":247},"obj":"NN"},{"id":"T3383","span":{"begin":248,"end":252},"obj":"VB"},{"id":"T3384","span":{"begin":253,"end":261},"obj":"VB"},{"id":"T3385","span":{"begin":262,"end":266},"obj":"IN"},{"id":"T3386","span":{"begin":267,"end":272},"obj":"NN"}],"relations":[{"id":"R2586","pred":"arg1Of","subj":"T3341","obj":"T3342"},{"id":"R2587","pred":"arg1Of","subj":"T3341","obj":"T3346"},{"id":"R2588","pred":"arg2Of","subj":"T3345","obj":"T3342"},{"id":"R2589","pred":"arg1Of","subj":"T3345","obj":"T3343"},{"id":"R2590","pred":"arg1Of","subj":"T3345","obj":"T3344"},{"id":"R2591","pred":"arg2Of","subj":"T3348","obj":"T3346"},{"id":"R2592","pred":"arg2Of","subj":"T3348","obj":"T3347"},{"id":"R2593","pred":"arg1Of","subj":"T3348","obj":"T3349"},{"id":"R2594","pred":"arg2Of","subj":"T3350","obj":"T3349"},{"id":"R2595","pred":"arg1Of","subj":"T3350","obj":"T3351"},{"id":"R2596","pred":"arg2Of","subj":"T3353","obj":"T3351"},{"id":"R2597","pred":"arg1Of","subj":"T3353","obj":"T3352"},{"id":"R2598","pred":"arg1Of","subj":"T3353","obj":"T3354"},{"id":"R2599","pred":"arg2Of","subj":"T3355","obj":"T3354"},{"id":"R2600","pred":"arg2Of","subj":"T3359","obj":"T3356"},{"id":"R2601","pred":"arg1Of","subj":"T3359","obj":"T3357"},{"id":"R2602","pred":"arg1Of","subj":"T3359","obj":"T3358"},{"id":"R2603","pred":"arg1Of","subj":"T3361","obj":"T3362"},{"id":"R2604","pred":"arg1Of","subj":"T3362","obj":"T3356"},{"id":"R2605","pred":"arg1Of","subj":"T3362","obj":"T3360"},{"id":"R2606","pred":"arg1Of","subj":"T3364","obj":"T3365"},{"id":"R2607","pred":"arg2Of","subj":"T3364","obj":"T3366"},{"id":"R2608","pred":"arg2Of","subj":"T3366","obj":"T3362"},{"id":"R2609","pred":"arg1Of","subj":"T3366","obj":"T3363"},{"id":"R2610","pred":"arg2Of","subj":"T3366","obj":"T3365"},{"id":"R2611","pred":"arg1Of","subj":"T3366","obj":"T3367"},{"id":"R2612","pred":"arg1Of","subj":"T3366","obj":"T3372"},{"id":"R2613","pred":"arg1Of","subj":"T3366","obj":"T3378"},{"id":"R2614","pred":"arg2Of","subj":"T3371","obj":"T3367"},{"id":"R2615","pred":"arg1Of","subj":"T3371","obj":"T3368"},{"id":"R2616","pred":"arg1Of","subj":"T3371","obj":"T3369"},{"id":"R2617","pred":"arg1Of","subj":"T3371","obj":"T3370"},{"id":"R2618","pred":"arg2Of","subj":"T3377","obj":"T3372"},{"id":"R2619","pred":"arg1Of","subj":"T3377","obj":"T3373"},{"id":"R2620","pred":"arg1Of","subj":"T3377","obj":"T3374"},{"id":"R2621","pred":"arg1Of","subj":"T3377","obj":"T3375"},{"id":"R2622","pred":"arg1Of","subj":"T3377","obj":"T3376"},{"id":"R2623","pred":"arg2Of","subj":"T3379","obj":"T3378"},{"id":"R2624","pred":"arg3Of","subj":"T3380","obj":"T3378"},{"id":"R2625","pred":"arg1Of","subj":"T3382","obj":"T3381"},{"id":"R2626","pred":"arg1Of","subj":"T3382","obj":"T3383"},{"id":"R2627","pred":"arg2Of","subj":"T3382","obj":"T3384"},{"id":"R2628","pred":"arg2Of","subj":"T3384","obj":"T3383"},{"id":"R2629","pred":"arg1Of","subj":"T3384","obj":"T3385"}],"namespaces":[{"prefix":"_base","uri":"http://kmcs.nii.ac.jp/enju/"}],"text":"ent.\n\nResults\n\nGeneration of HOIP-deficient B cells via targeted disruption of Rnf31, the gene encoding HOIP\nIn our previous study, we demonstrated that HOIP is recruited to the CD40 signaling complex in two mouse B cell lines [6]. Similar results were obtained with mouse splen"}
2_test
{"project":"2_test","denotations":[{"id":"21829693-20614026-89653758","span":{"begin":228,"end":229},"obj":"20614026"},{"id":"T45718","span":{"begin":228,"end":229},"obj":"20614026"}],"text":"ent.\n\nResults\n\nGeneration of HOIP-deficient B cells via targeted disruption of Rnf31, the gene encoding HOIP\nIn our previous study, we demonstrated that HOIP is recruited to the CD40 signaling complex in two mouse B cell lines [6]. Similar results were obtained with mouse splen"}
bionlp-st-ge-2016-spacy-parsed
{"project":"bionlp-st-ge-2016-spacy-parsed","denotations":[{"id":"T1724","span":{"begin":3,"end":4},"obj":"."},{"id":"T2880","span":{"begin":15,"end":25},"obj":"NNP"},{"id":"T2881","span":{"begin":26,"end":28},"obj":"IN"},{"id":"T2882","span":{"begin":29,"end":43},"obj":"NNP"},{"id":"T2883","span":{"begin":44,"end":45},"obj":"NNP"},{"id":"T2884","span":{"begin":46,"end":51},"obj":"NNS"},{"id":"T2885","span":{"begin":52,"end":55},"obj":"IN"},{"id":"T2886","span":{"begin":56,"end":64},"obj":"JJ"},{"id":"T2887","span":{"begin":65,"end":75},"obj":"NN"},{"id":"T2888","span":{"begin":76,"end":78},"obj":"IN"},{"id":"T2889","span":{"begin":79,"end":84},"obj":"NNP"},{"id":"T2890","span":{"begin":84,"end":85},"obj":","},{"id":"T2891","span":{"begin":86,"end":89},"obj":"DT"},{"id":"T2892","span":{"begin":90,"end":94},"obj":"NN"},{"id":"T2893","span":{"begin":95,"end":103},"obj":"VBG"},{"id":"T2894","span":{"begin":104,"end":108},"obj":"NNP"},{"id":"T2895","span":{"begin":109,"end":111},"obj":"IN"},{"id":"T2896","span":{"begin":112,"end":115},"obj":"PRP$"},{"id":"T2897","span":{"begin":116,"end":124},"obj":"JJ"},{"id":"T2898","span":{"begin":125,"end":130},"obj":"NN"},{"id":"T2899","span":{"begin":130,"end":131},"obj":","},{"id":"T2900","span":{"begin":132,"end":134},"obj":"PRP"},{"id":"T2901","span":{"begin":135,"end":147},"obj":"VBD"},{"id":"T2902","span":{"begin":148,"end":152},"obj":"IN"},{"id":"T2903","span":{"begin":153,"end":157},"obj":"NNP"},{"id":"T2904","span":{"begin":158,"end":160},"obj":"VBZ"},{"id":"T2905","span":{"begin":161,"end":170},"obj":"VBN"},{"id":"T2906","span":{"begin":171,"end":173},"obj":"TO"},{"id":"T2907","span":{"begin":174,"end":177},"obj":"DT"},{"id":"T2908","span":{"begin":178,"end":182},"obj":"NNP"},{"id":"T2909","span":{"begin":183,"end":192},"obj":"VBG"},{"id":"T2910","span":{"begin":193,"end":200},"obj":"JJ"},{"id":"T2911","span":{"begin":201,"end":203},"obj":"IN"},{"id":"T2912","span":{"begin":204,"end":207},"obj":"CD"},{"id":"T2913","span":{"begin":208,"end":213},"obj":"NN"},{"id":"T2914","span":{"begin":214,"end":215},"obj":"NNP"},{"id":"T2915","span":{"begin":216,"end":220},"obj":"NN"},{"id":"T2916","span":{"begin":221,"end":226},"obj":"NNS"},{"id":"T2917","span":{"begin":227,"end":228},"obj":"VBP"},{"id":"T2918","span":{"begin":228,"end":229},"obj":"CD"},{"id":"T2919","span":{"begin":229,"end":230},"obj":"NNP"},{"id":"T2920","span":{"begin":230,"end":231},"obj":"."},{"id":"T2921","span":{"begin":232,"end":239},"obj":"JJ"},{"id":"T2922","span":{"begin":240,"end":247},"obj":"NNS"},{"id":"T2923","span":{"begin":248,"end":252},"obj":"VBD"},{"id":"T2924","span":{"begin":253,"end":261},"obj":"VBN"},{"id":"T2925","span":{"begin":262,"end":266},"obj":"IN"},{"id":"T2926","span":{"begin":267,"end":272},"obj":"NN"}],"relations":[{"id":"R2125","pred":"ROOT","subj":"T2880","obj":"T2880"},{"id":"R2126","pred":"prep","subj":"T2881","obj":"T2880"},{"id":"R2127","pred":"compound","subj":"T2882","obj":"T2883"},{"id":"R2128","pred":"compound","subj":"T2883","obj":"T2884"},{"id":"R2129","pred":"pobj","subj":"T2884","obj":"T2881"},{"id":"R2130","pred":"prep","subj":"T2885","obj":"T2880"},{"id":"R2131","pred":"amod","subj":"T2886","obj":"T2887"},{"id":"R2132","pred":"pobj","subj":"T2887","obj":"T2885"},{"id":"R2133","pred":"prep","subj":"T2888","obj":"T2887"},{"id":"R2134","pred":"pobj","subj":"T2889","obj":"T2888"},{"id":"R2135","pred":"punct","subj":"T2890","obj":"T2889"},{"id":"R2136","pred":"det","subj":"T2891","obj":"T2892"},{"id":"R2137","pred":"appos","subj":"T2892","obj":"T2889"},{"id":"R2138","pred":"acl","subj":"T2893","obj":"T2892"},{"id":"R2139","pred":"dobj","subj":"T2894","obj":"T2893"},{"id":"R2140","pred":"prep","subj":"T2895","obj":"T2901"},{"id":"R2141","pred":"poss","subj":"T2896","obj":"T2898"},{"id":"R2142","pred":"amod","subj":"T2897","obj":"T2898"},{"id":"R2143","pred":"pobj","subj":"T2898","obj":"T2895"},{"id":"R2144","pred":"punct","subj":"T2899","obj":"T2901"},{"id":"R2145","pred":"nsubj","subj":"T2900","obj":"T2901"},{"id":"R2146","pred":"ROOT","subj":"T2901","obj":"T2901"},{"id":"R2147","pred":"mark","subj":"T2902","obj":"T2905"},{"id":"R2148","pred":"nsubjpass","subj":"T2903","obj":"T2905"},{"id":"R2149","pred":"auxpass","subj":"T2904","obj":"T2905"},{"id":"R2150","pred":"ccomp","subj":"T2905","obj":"T2901"},{"id":"R2151","pred":"prep","subj":"T2906","obj":"T2905"},{"id":"R2152","pred":"det","subj":"T2907","obj":"T2908"},{"id":"R2153","pred":"nsubj","subj":"T2908","obj":"T2909"},{"id":"R2154","pred":"pcomp","subj":"T2909","obj":"T2906"},{"id":"R2155","pred":"dobj","subj":"T2910","obj":"T2909"},{"id":"R2156","pred":"prep","subj":"T2911","obj":"T2909"},{"id":"R2157","pred":"nummod","subj":"T2912","obj":"T2916"},{"id":"R2158","pred":"compound","subj":"T2913","obj":"T2915"},{"id":"R2159","pred":"compound","subj":"T2914","obj":"T2915"},{"id":"R2160","pred":"compound","subj":"T2915","obj":"T2916"},{"id":"R2161","pred":"pobj","subj":"T2916","obj":"T2911"},{"id":"R2162","pred":"p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of HOIP-deficient B cells via targeted disruption of Rnf31, the gene encoding HOIP\nIn our previous study, we demonstrated that HOIP is recruited to the CD40 signaling complex in two mouse B cell lines [6]. Similar results were obtained with mouse splen"}
GO-BP
{"project":"GO-BP","denotations":[{"id":"T3835","span":{"begin":183,"end":192},"obj":"http://purl.obolibrary.org/obo/GO_0023052"}],"text":"ent.\n\nResults\n\nGeneration of HOIP-deficient B cells via targeted disruption of Rnf31, the gene encoding HOIP\nIn our previous study, we demonstrated that HOIP is recruited to the CD40 signaling complex in two mouse B cell lines [6]. Similar results were obtained with mouse splen"}
GO-CC
{"project":"GO-CC","denotations":[{"id":"T3841","span":{"begin":46,"end":51},"obj":"http://purl.obolibrary.org/obo/GO_0005623"}],"text":"ent.\n\nResults\n\nGeneration of HOIP-deficient B cells via targeted disruption of Rnf31, the gene encoding HOIP\nIn our previous study, we demonstrated that HOIP is recruited to the CD40 signaling complex in two mouse B cell lines [6]. Similar results were obtained with mouse splen"}
sentences
{"project":"sentences","denotations":[{"id":"T2863","span":{"begin":15,"end":108},"obj":"Sentence"},{"id":"T2864","span":{"begin":109,"end":231},"obj":"Sentence"},{"id":"T34","span":{"begin":6,"end":13},"obj":"Sentence"},{"id":"T35","span":{"begin":15,"end":108},"obj":"Sentence"},{"id":"T36","span":{"begin":109,"end":231},"obj":"Sentence"}],"namespaces":[{"prefix":"_base","uri":"http://pubannotation.org/ontology/tao.owl#"}],"text":"ent.\n\nResults\n\nGeneration of HOIP-deficient B cells via targeted disruption of Rnf31, the gene encoding HOIP\nIn our previous study, we demonstrated that HOIP is recruited to the CD40 signaling complex in two mouse B cell lines [6]. Similar results were obtained with mouse splen"}
bionlp-st-ge-2016-uniprot
{"project":"bionlp-st-ge-2016-uniprot","denotations":[{"id":"T3782","span":{"begin":29,"end":33},"obj":"Q96EP0"},{"id":"T3783","span":{"begin":79,"end":84},"obj":"Q96EP0"},{"id":"T3784","span":{"begin":104,"end":108},"obj":"Q96EP0"},{"id":"T3785","span":{"begin":153,"end":157},"obj":"Q96EP0"},{"id":"T3786","span":{"begin":178,"end":182},"obj":"P25942"}],"namespaces":[{"prefix":"_base","uri":"http://www.uniprot.org/uniprot/"}],"text":"ent.\n\nResults\n\nGeneration of HOIP-deficient B cells via targeted disruption of Rnf31, the gene encoding HOIP\nIn our previous study, we demonstrated that HOIP is recruited to the CD40 signaling complex in two mouse B cell lines [6]. Similar results were obtained with mouse splen"}
test2
{"project":"test2","denotations":[{"id":"T2762","span":{"begin":29,"end":33},"obj":"Protein"},{"id":"T2763","span":{"begin":34,"end":43},"obj":"Negative_regulation"},{"id":"T2764","span":{"begin":65,"end":75},"obj":"Negative_regulation"},{"id":"T2765","span":{"begin":79,"end":84},"obj":"Protein"},{"id":"T2766","span":{"begin":104,"end":108},"obj":"Protein"},{"id":"T2767","span":{"begin":153,"end":157},"obj":"Protein"},{"id":"T2768","span":{"begin":161,"end":170},"obj":"Binding"}],"relations":[{"id":"R2078","pred":"themeOf","subj":"T2762","obj":"T2763"},{"id":"R2079","pred":"themeOf","subj":"T2765","obj":"T2764"},{"id":"R2080","pred":"equivalentTo","subj":"T2766","obj":"T2765"},{"id":"R2081","pred":"themeOf","subj":"T2767","obj":"T2768"}],"text":"ent.\n\nResults\n\nGeneration of HOIP-deficient B cells via targeted disruption of Rnf31, the gene encoding HOIP\nIn our previous study, we demonstrated that HOIP is recruited to the CD40 signaling complex in two mouse B cell lines [6]. Similar results were obtained with mouse splen"}