PMC:3062687 / 35453-35752 JSONTXT

Annnotations TAB JSON ListView MergeView

    bionlp-st-ge-2016-uniprot

    {"project":"bionlp-st-ge-2016-uniprot","denotations":[{"id":"T23282","span":{"begin":253,"end":257},"obj":"P23396"}],"namespaces":[{"prefix":"_base","uri":"http://www.uniprot.org/uniprot/"}],"text":"Immunohistochemistry\nGnotobiotic piglets were infected with E. coli O157:H7 strains as described previously9. Spiral colon specimens were collected at necropsy and embedded in paraffin. Paraffin sectioning and immunohistochemical staining using phospho-RPS3 antibody were performed by Histoserv Inc."}

    2_test

    {"project":"2_test","denotations":[{"id":"21399639-20041225-74765195","span":{"begin":107,"end":108},"obj":"20041225"},{"id":"21399639-20041225-74765195","span":{"begin":107,"end":108},"obj":"20041225"}],"text":"Immunohistochemistry\nGnotobiotic piglets were infected with E. coli O157:H7 strains as described previously9. Spiral colon specimens were collected at necropsy and embedded in paraffin. Paraffin sectioning and immunohistochemical staining using phospho-RPS3 antibody were performed by Histoserv Inc."}

    pmc-enju-pas

    {"project":"pmc-enju-pas","denotations":[{"id":"T23243","span":{"begin":0,"end":20},"obj":"NN"},{"id":"T23244","span":{"begin":21,"end":32},"obj":"JJ"},{"id":"T23245","span":{"begin":33,"end":40},"obj":"NN"},{"id":"T23246","span":{"begin":41,"end":45},"obj":"VB"},{"id":"T23247","span":{"begin":46,"end":54},"obj":"VB"},{"id":"T23248","span":{"begin":55,"end":59},"obj":"IN"},{"id":"T23249","span":{"begin":60,"end":62},"obj":"FW"},{"id":"T23250","span":{"begin":63,"end":67},"obj":"FW"},{"id":"T23251","span":{"begin":68,"end":72},"obj":"NN"},{"id":"T23252","span":{"begin":72,"end":73},"obj":"-COLON-"},{"id":"T23253","span":{"begin":73,"end":75},"obj":"NN"},{"id":"T23254","span":{"begin":76,"end":83},"obj":"NN"},{"id":"T23255","span":{"begin":84,"end":86},"obj":"IN"},{"id":"T23256","span":{"begin":87,"end":96},"obj":"VB"},{"id":"T23257","span":{"begin":97,"end":108},"obj":"NN"},{"id":"T23258","span":{"begin":110,"end":116},"obj":"JJ"},{"id":"T23259","span":{"begin":117,"end":122},"obj":"NN"},{"id":"T23260","span":{"begin":123,"end":132},"obj":"NN"},{"id":"T23261","span":{"begin":133,"end":137},"obj":"VB"},{"id":"T23262","span":{"begin":138,"end":147},"obj":"VB"},{"id":"T23263","span":{"begin":148,"end":150},"obj":"IN"},{"id":"T23264","span":{"begin":151,"end":159},"obj":"NN"},{"id":"T23265","span":{"begin":160,"end":163},"obj":"CC"},{"id":"T23266","span":{"begin":164,"end":172},"obj":"VB"},{"id":"T23267","span":{"begin":173,"end":175},"obj":"IN"},{"id":"T23268","span":{"begin":176,"end":184},"obj":"NN"},{"id":"T23269","span":{"begin":186,"end":194},"obj":"NN"},{"id":"T23270","span":{"begin":195,"end":205},"obj":"NN"},{"id":"T23271","span":{"begin":206,"end":209},"obj":"CC"},{"id":"T23272","span":{"begin":210,"end":229},"obj":"JJ"},{"id":"T23273","span":{"begin":230,"end":238},"obj":"NN"},{"id":"T23274","span":{"begin":239,"end":244},"obj":"VB"},{"id":"T23275","span":{"begin":245,"end":257},"obj":"NN"},{"id":"T23276","span":{"begin":258,"end":266},"obj":"NN"},{"id":"T23277","span":{"begin":267,"end":271},"obj":"VB"},{"id":"T23278","span":{"begin":272,"end":281},"obj":"VB"},{"id":"T23279","span":{"begin":282,"end":284},"obj":"IN"},{"id":"T23280","span":{"begin":285,"end":294},"obj":"NNP"},{"id":"T23281","span":{"begin":295,"end":298},"obj":"NNP"}],"relations":[{"id":"R18591","pred":"arg1Of","subj":"T23245","obj":"T23244"},{"id":"R18592","pred":"arg1Of","subj":"T23245","obj":"T23246"},{"id":"R18593","pred":"arg2Of","subj":"T23245","obj":"T23247"},{"id":"R18594","pred":"arg2Of","subj":"T23247","obj":"T23246"},{"id":"R18595","pred":"arg1Of","subj":"T23247","obj":"T23248"},{"id":"R18596","pred":"arg1Of","subj":"T23247","obj":"T23255"},{"id":"R18597","pred":"arg1Of","subj":"T23251","obj":"T23249"},{"id":"R18598","pred":"arg1Of","subj":"T23251","obj":"T23250"},{"id":"R18599","pred":"arg1Of","subj":"T23251","obj":"T23252"},{"id":"R18600","pred":"arg2Of","subj":"T23252","obj":"T23248"},{"id":"R18601","pred":"arg2Of","subj":"T23254","obj":"T23252"},{"id":"R18602","pred":"arg1Of","subj":"T23254","obj":"T23253"},{"id":"R18603","pred":"arg2Of","subj":"T23257","obj":"T23255"},{"id":"R18604","pred":"arg2Of","subj":"T23257","obj":"T23256"},{"id":"R18605","pred":"arg1Of","subj":"T23260","obj":"T23258"},{"id":"R18606","pred":"arg1Of","subj":"T23260","obj":"T23259"},{"id":"R18607","pred":"arg1Of","subj":"T23260","obj":"T23261"},{"id":"R18608","pred":"arg2Of","subj":"T23260","obj":"T23262"},{"id":"R18609","pred":"arg2Of","subj":"T23260","obj":"T23266"},{"id":"R18610","pred":"arg1Of","subj":"T23262","obj":"T23263"},{"id":"R18611","pred":"arg1Of","subj":"T23262","obj":"T23265"},{"id":"R18612","pred":"arg2Of","subj":"T23264","obj":"T23263"},{"id":"R18613","pred":"arg2Of","subj":"T23265","obj":"T23261"},{"id":"R18614","pred":"arg2Of","subj":"T23266","obj":"T23265"},{"id":"R18615","pred":"arg1Of","subj":"T23266","obj":"T23267"},{"id":"R18616","pred":"arg2Of","subj":"T23268","obj":"T23267"},{"id":"R18617","pred":"arg1Of","subj":"T23270","obj":"T23269"},{"id":"R18618","pred":"arg1Of","subj":"T23270","obj":"T23271"},{"id":"R18619","pred":"arg1Of","subj":"T23271","obj":"T23274"},{"id":"R18620","pred":"arg1Of","subj":"T23271","obj":"T23277"},{"id":"R18621","pred":"arg2Of","subj":"T23271","obj":"T23278"},{"id":"R18622","pred":"arg2Of","subj":"T23273","obj":"T23271"},{"id":"R18623","pred":"arg1Of","subj":"T23273","obj":"T23272"},{"id":"R18624","pred":"arg2Of","subj":"T23276","obj":"T23274"},{"id":"R18625","pred":"arg1Of","subj":"T23276","obj":"T23275"},{"id":"R18626","pred":"arg2Of","subj":"T23278","obj":"T23277"},{"id":"R18627","pred":"arg1Of","subj":"T23281","obj":"T23278"},{"id":"R18628","pred":"arg2Of","subj":"T23281","obj":"T23279"},{"id":"R18629","pred":"arg1Of","subj":"T23281","obj":"T23280"}],"namespaces":[{"prefix":"_base","uri":"http://kmcs.nii.ac.jp/enju/"}],"text":"Immunohistochemistry\nGnotobiotic piglets were infected with E. coli O157:H7 strains as described previously9. Spiral colon specimens were collected at necropsy and embedded in paraffin. Paraffin sectioning and immunohistochemical staining using phospho-RPS3 antibody were performed by Histoserv Inc."}

    bionlp-st-ge-2016-spacy-parsed

    {"project":"bionlp-st-ge-2016-spacy-parsed","denotations":[{"id":"T23283","span":{"begin":0,"end":20},"obj":"NNP"},{"id":"T23284","span":{"begin":21,"end":32},"obj":"NNP"},{"id":"T23285","span":{"begin":33,"end":40},"obj":"NNS"},{"id":"T23286","span":{"begin":41,"end":45},"obj":"VBD"},{"id":"T23287","span":{"begin":46,"end":54},"obj":"VBN"},{"id":"T23288","span":{"begin":55,"end":59},"obj":"IN"},{"id":"T23289","span":{"begin":60,"end":62},"obj":"NNP"},{"id":"T23290","span":{"begin":63,"end":67},"obj":"NNS"},{"id":"T23291","span":{"begin":68,"end":72},"obj":"NNP"},{"id":"T23292","span":{"begin":72,"end":73},"obj":":"},{"id":"T23293","span":{"begin":73,"end":75},"obj":"NNP"},{"id":"T23294","span":{"begin":76,"end":83},"obj":"NNS"},{"id":"T23295","span":{"begin":84,"end":86},"obj":"IN"},{"id":"T23296","span":{"begin":87,"end":96},"obj":"VBN"},{"id":"T23297","span":{"begin":97,"end":108},"obj":"CD"},{"id":"T23298","span":{"begin":108,"end":109},"obj":"."},{"id":"T23299","span":{"begin":110,"end":116},"obj":"NN"},{"id":"T23300","span":{"begin":117,"end":122},"obj":"NN"},{"id":"T23301","span":{"begin":123,"end":132},"obj":"NNS"},{"id":"T23302","span":{"begin":133,"end":137},"obj":"VBD"},{"id":"T23303","span":{"begin":138,"end":147},"obj":"VBN"},{"id":"T23304","span":{"begin":148,"end":150},"obj":"IN"},{"id":"T23305","span":{"begin":151,"end":159},"obj":"NN"},{"id":"T23306","span":{"begin":160,"end":163},"obj":"CC"},{"id":"T23307","span":{"begin":164,"end":172},"obj":"VBN"},{"id":"T23308","span":{"begin":173,"end":175},"obj":"IN"},{"id":"T23309","span":{"begin":176,"end":184},"obj":"NN"},{"id":"T23310","span":{"begin":184,"end":185},"obj":"."},{"id":"T23311","span":{"begin":186,"end":194},"obj":"NNP"},{"id":"T23312","span":{"begin":195,"end":205},"obj":"NN"},{"id":"T23313","span":{"begin":206,"end":209},"obj":"CC"},{"id":"T23314","span":{"begin":210,"end":229},"obj":"JJ"},{"id":"T23315","span":{"begin":230,"end":238},"obj":"NN"},{"id":"T23316","span":{"begin":239,"end":244},"obj":"VBG"},{"id":"T23317","span":{"begin":245,"end":257},"obj":"JJ"},{"id":"T23318","span":{"begin":258,"end":266},"obj":"NN"},{"id":"T23319","span":{"begin":267,"end":271},"obj":"VBD"},{"id":"T23320","span":{"begin":272,"end":281},"obj":"VBN"},{"id":"T23321","span":{"begin":282,"end":284},"obj":"IN"},{"id":"T23322","span":{"begin":285,"end":294},"obj":"NNP"},{"id":"T23323","span":{"begin":295,"end":299},"obj":"NNP"}],"relations":[{"id":"R18630","pred":"compound","subj":"T23283","obj":"T23284"},{"id":"R18631","pred":"compound","subj":"T23284","obj":"T23285"},{"id":"R18632","pred":"nsubjpass","subj":"T23285","obj":"T23287"},{"id":"R18633","pred":"auxpass","subj":"T23286","obj":"T23287"},{"id":"R18634","pred":"ROOT","subj":"T23287","obj":"T23287"},{"id":"R18635","pred":"prep","subj":"T23288","obj":"T23287"},{"id":"R18636","pred":"compound","subj":"T23289","obj":"T23291"},{"id":"R18637","pred":"compound","subj":"T23290","obj":"T23291"},{"id":"R18638","pred":"pobj","subj":"T23291","obj":"T23288"},{"id":"R18639","pred":"punct","subj":"T23292","obj":"T23291"},{"id":"R18640","pred":"compound","subj":"T23293","obj":"T23294"},{"id":"R18641","pred":"nsubj","subj":"T23294","obj":"T23296"},{"id":"R18642","pred":"mark","subj":"T23295","obj":"T23296"},{"id":"R18643","pred":"advcl","subj":"T23296","obj":"T23287"},{"id":"R18644","pred":"dobj","subj":"T23297","obj":"T23296"},{"id":"R18645","pred":"punct","subj":"T23298","obj":"T23287"},{"id":"R18646","pred":"amod","subj":"T23299","obj":"T23301"},{"id":"R18647","pred":"compound","subj":"T23300","obj":"T23301"},{"id":"R18648","pred":"nsubjpass","subj":"T23301","obj":"T23303"},{"id":"R18649","pred":"auxpass","subj":"T23302","obj":"T23303"},{"id":"R18650","pred":"ROOT","subj":"T23303","obj":"T23303"},{"id":"R18651","pred":"prep","subj":"T23304","obj":"T23303"},{"id":"R18652","pred":"pobj","subj":"T23305","obj":"T23304"},{"id":"R18653","pred":"cc","subj":"T23306","obj":"T23303"},{"id":"R18654","pred":"conj","subj":"T23307","obj":"T23303"},{"id":"R18655","pred":"prep","subj":"T23308","obj":"T23307"},{"id":"R18656","pred":"pobj","subj":"T23309","obj":"T23308"},{"id":"R18657","pred":"punct","subj":"T23310","obj":"T23303"},{"id":"R18658","pred":"compound","subj":"T23311","obj":"T23312"},{"id":"R18659","pred":"nsubjpass","subj":"T23312","obj":"T23320"},{"id":"R18660","pred":"cc","subj":"T23313","obj":"T23312"},{"id":"R18661","pred":"nsubjpass","subj":"T23314","obj":"T23320"},{"id":"R18662","pred":"prep","subj":"T23315","obj":"T23314"},{"id":"R18663","pred":"advcl","subj":"T23316","obj":"T23314"},{"id":"R18664","pred":"amod","subj":"T23317","obj":"T23318"},{"id":"R18665","pred":"dobj","subj":"T23318","obj":"T23316"},{"id":"R18666","pred":"auxpass","subj":"T23319","obj":"T23320"},{"id":"R18667","pred":"ROOT","subj":"T23320","obj":"T23320"},{"id":"R18668","pred":"agent","subj":"T23321","obj":"T23320"},{"id":"R18669","pred":"compound","subj":"T23322","obj":"T23323"},{"id":"R18670","pred":"pobj","subj":"T23323","obj":"T23321"}],"text":"Immunohistochemistry\nGnotobiotic piglets were infected with E. coli O157:H7 strains as described previously9. Spiral colon specimens were collected at necropsy and embedded in paraffin. Paraffin sectioning and immunohistochemical staining using phospho-RPS3 antibody were performed by Histoserv Inc."}

    UBERON-AE

    {"project":"UBERON-AE","denotations":[{"id":"T23238","span":{"begin":117,"end":122},"obj":"http://purl.obolibrary.org/obo/UBERON_0001155"}],"text":"Immunohistochemistry\nGnotobiotic piglets were infected with E. coli O157:H7 strains as described previously9. Spiral colon specimens were collected at necropsy and embedded in paraffin. Paraffin sectioning and immunohistochemical staining using phospho-RPS3 antibody were performed by Histoserv Inc."}

    GO-MF

    {"project":"GO-MF","denotations":[{"id":"T23328","span":{"begin":258,"end":266},"obj":"http://purl.obolibrary.org/obo/GO_0003823"}],"text":"Immunohistochemistry\nGnotobiotic piglets were infected with E. coli O157:H7 strains as described previously9. Spiral colon specimens were collected at necropsy and embedded in paraffin. Paraffin sectioning and immunohistochemical staining using phospho-RPS3 antibody were performed by Histoserv Inc."}

    GO-CC

    {"project":"GO-CC","denotations":[{"id":"T23329","span":{"begin":258,"end":266},"obj":"http://purl.obolibrary.org/obo/GO_0019815"},{"id":"T23330","span":{"begin":258,"end":266},"obj":"http://purl.obolibrary.org/obo/GO_0042571"}],"text":"Immunohistochemistry\nGnotobiotic piglets were infected with E. coli O157:H7 strains as described previously9. Spiral colon specimens were collected at necropsy and embedded in paraffin. Paraffin sectioning and immunohistochemical staining using phospho-RPS3 antibody were performed by Histoserv Inc."}

    sentences

    {"project":"sentences","denotations":[{"id":"T23239","span":{"begin":0,"end":20},"obj":"Sentence"},{"id":"T23240","span":{"begin":21,"end":109},"obj":"Sentence"},{"id":"T23241","span":{"begin":110,"end":185},"obj":"Sentence"},{"id":"T23242","span":{"begin":186,"end":299},"obj":"Sentence"},{"id":"T252","span":{"begin":0,"end":20},"obj":"Sentence"},{"id":"T253","span":{"begin":21,"end":109},"obj":"Sentence"},{"id":"T254","span":{"begin":110,"end":185},"obj":"Sentence"},{"id":"T255","span":{"begin":186,"end":299},"obj":"Sentence"}],"namespaces":[{"prefix":"_base","uri":"http://pubannotation.org/ontology/tao.owl#"}],"text":"Immunohistochemistry\nGnotobiotic piglets were infected with E. coli O157:H7 strains as described previously9. Spiral colon specimens were collected at necropsy and embedded in paraffin. Paraffin sectioning and immunohistochemical staining using phospho-RPS3 antibody were performed by Histoserv Inc."}

    bionlp-st-ge-2016-reference-tees

    {"project":"bionlp-st-ge-2016-reference-tees","denotations":[{"id":"T23331","span":{"begin":176,"end":184},"obj":"Protein"},{"id":"T23332","span":{"begin":253,"end":257},"obj":"Protein"},{"id":"T23333","span":{"begin":285,"end":298},"obj":"Protein"}],"text":"Immunohistochemistry\nGnotobiotic piglets were infected with E. coli O157:H7 strains as described previously9. Spiral colon specimens were collected at necropsy and embedded in paraffin. Paraffin sectioning and immunohistochemical staining using phospho-RPS3 antibody were performed by Histoserv Inc."}