PMC:3062687 / 35453-35752
Annnotations
bionlp-st-ge-2016-uniprot
| Id | Subject | Object | Predicate | Lexical cue |
|---|---|---|---|---|
| T23282 | 253-257 | P23396 | denotes | RPS3 |
2_test
| Id | Subject | Object | Predicate | Lexical cue |
|---|---|---|---|---|
| 21399639-20041225-74765195 | 107-108 | 20041225 | denotes | 9 |
| 21399639-20041225-74765195 | 107-108 | 20041225 | denotes | 9 |
pmc-enju-pas
| Id | Subject | Object | Predicate | Lexical cue |
|---|---|---|---|---|
| T23243 | 0-20 | NN | denotes | Immunohistochemistry |
| T23244 | 21-32 | JJ | denotes | Gnotobiotic |
| T23245 | 33-40 | NN | denotes | piglets |
| T23246 | 41-45 | VB | denotes | were |
| T23247 | 46-54 | VB | denotes | infected |
| T23248 | 55-59 | IN | denotes | with |
| T23249 | 60-62 | FW | denotes | E. |
| T23250 | 63-67 | FW | denotes | coli |
| T23251 | 68-72 | NN | denotes | O157 |
| T23252 | 72-73 | -COLON- | denotes | : |
| T23253 | 73-75 | NN | denotes | H7 |
| T23254 | 76-83 | NN | denotes | strains |
| T23255 | 84-86 | IN | denotes | as |
| T23256 | 87-96 | VB | denotes | described |
| T23257 | 97-108 | NN | denotes | previously9 |
| T23258 | 110-116 | JJ | denotes | Spiral |
| T23259 | 117-122 | NN | denotes | colon |
| T23260 | 123-132 | NN | denotes | specimens |
| T23261 | 133-137 | VB | denotes | were |
| T23262 | 138-147 | VB | denotes | collected |
| T23263 | 148-150 | IN | denotes | at |
| T23264 | 151-159 | NN | denotes | necropsy |
| T23265 | 160-163 | CC | denotes | and |
| T23266 | 164-172 | VB | denotes | embedded |
| T23267 | 173-175 | IN | denotes | in |
| T23268 | 176-184 | NN | denotes | paraffin |
| T23269 | 186-194 | NN | denotes | Paraffin |
| T23270 | 195-205 | NN | denotes | sectioning |
| T23271 | 206-209 | CC | denotes | and |
| T23272 | 210-229 | JJ | denotes | immunohistochemical |
| T23273 | 230-238 | NN | denotes | staining |
| T23274 | 239-244 | VB | denotes | using |
| T23275 | 245-257 | NN | denotes | phospho-RPS3 |
| T23276 | 258-266 | NN | denotes | antibody |
| T23277 | 267-271 | VB | denotes | were |
| T23278 | 272-281 | VB | denotes | performed |
| T23279 | 282-284 | IN | denotes | by |
| T23280 | 285-294 | NNP | denotes | Histoserv |
| T23281 | 295-298 | NNP | denotes | Inc |
| R18591 | T23245 | T23244 | arg1Of | piglets,Gnotobiotic |
| R18592 | T23245 | T23246 | arg1Of | piglets,were |
| R18593 | T23245 | T23247 | arg2Of | piglets,infected |
| R18594 | T23247 | T23246 | arg2Of | infected,were |
| R18595 | T23247 | T23248 | arg1Of | infected,with |
| R18596 | T23247 | T23255 | arg1Of | infected,as |
| R18597 | T23251 | T23249 | arg1Of | O157,E. |
| R18598 | T23251 | T23250 | arg1Of | O157,coli |
| R18599 | T23251 | T23252 | arg1Of | O157,: |
| R18600 | T23252 | T23248 | arg2Of | :,with |
| R18601 | T23254 | T23252 | arg2Of | strains,: |
| R18602 | T23254 | T23253 | arg1Of | strains,H7 |
| R18603 | T23257 | T23255 | arg2Of | previously9,as |
| R18604 | T23257 | T23256 | arg2Of | previously9,described |
| R18605 | T23260 | T23258 | arg1Of | specimens,Spiral |
| R18606 | T23260 | T23259 | arg1Of | specimens,colon |
| R18607 | T23260 | T23261 | arg1Of | specimens,were |
| R18608 | T23260 | T23262 | arg2Of | specimens,collected |
| R18609 | T23260 | T23266 | arg2Of | specimens,embedded |
| R18610 | T23262 | T23263 | arg1Of | collected,at |
| R18611 | T23262 | T23265 | arg1Of | collected,and |
| R18612 | T23264 | T23263 | arg2Of | necropsy,at |
| R18613 | T23265 | T23261 | arg2Of | and,were |
| R18614 | T23266 | T23265 | arg2Of | embedded,and |
| R18615 | T23266 | T23267 | arg1Of | embedded,in |
| R18616 | T23268 | T23267 | arg2Of | paraffin,in |
| R18617 | T23270 | T23269 | arg1Of | sectioning,Paraffin |
| R18618 | T23270 | T23271 | arg1Of | sectioning,and |
| R18619 | T23271 | T23274 | arg1Of | and,using |
| R18620 | T23271 | T23277 | arg1Of | and,were |
| R18621 | T23271 | T23278 | arg2Of | and,performed |
| R18622 | T23273 | T23271 | arg2Of | staining,and |
| R18623 | T23273 | T23272 | arg1Of | staining,immunohistochemical |
| R18624 | T23276 | T23274 | arg2Of | antibody,using |
| R18625 | T23276 | T23275 | arg1Of | antibody,phospho-RPS3 |
| R18626 | T23278 | T23277 | arg2Of | performed,were |
| R18627 | T23281 | T23278 | arg1Of | Inc,performed |
| R18628 | T23281 | T23279 | arg2Of | Inc,by |
| R18629 | T23281 | T23280 | arg1Of | Inc,Histoserv |
bionlp-st-ge-2016-spacy-parsed
| Id | Subject | Object | Predicate | Lexical cue |
|---|---|---|---|---|
| T23283 | 0-20 | NNP | denotes | Immunohistochemistry |
| T23284 | 21-32 | NNP | denotes | Gnotobiotic |
| T23285 | 33-40 | NNS | denotes | piglets |
| T23286 | 41-45 | VBD | denotes | were |
| T23287 | 46-54 | VBN | denotes | infected |
| T23288 | 55-59 | IN | denotes | with |
| T23289 | 60-62 | NNP | denotes | E. |
| T23290 | 63-67 | NNS | denotes | coli |
| T23291 | 68-72 | NNP | denotes | O157 |
| T23292 | 72-73 | : | denotes | : |
| T23293 | 73-75 | NNP | denotes | H7 |
| T23294 | 76-83 | NNS | denotes | strains |
| T23295 | 84-86 | IN | denotes | as |
| T23296 | 87-96 | VBN | denotes | described |
| T23297 | 97-108 | CD | denotes | previously9 |
| T23298 | 108-109 | . | denotes | . |
| T23299 | 110-116 | NN | denotes | Spiral |
| T23300 | 117-122 | NN | denotes | colon |
| T23301 | 123-132 | NNS | denotes | specimens |
| T23302 | 133-137 | VBD | denotes | were |
| T23303 | 138-147 | VBN | denotes | collected |
| T23304 | 148-150 | IN | denotes | at |
| T23305 | 151-159 | NN | denotes | necropsy |
| T23306 | 160-163 | CC | denotes | and |
| T23307 | 164-172 | VBN | denotes | embedded |
| T23308 | 173-175 | IN | denotes | in |
| T23309 | 176-184 | NN | denotes | paraffin |
| T23310 | 184-185 | . | denotes | . |
| T23311 | 186-194 | NNP | denotes | Paraffin |
| T23312 | 195-205 | NN | denotes | sectioning |
| T23313 | 206-209 | CC | denotes | and |
| T23314 | 210-229 | JJ | denotes | immunohistochemical |
| T23315 | 230-238 | NN | denotes | staining |
| T23316 | 239-244 | VBG | denotes | using |
| T23317 | 245-257 | JJ | denotes | phospho-RPS3 |
| T23318 | 258-266 | NN | denotes | antibody |
| T23319 | 267-271 | VBD | denotes | were |
| T23320 | 272-281 | VBN | denotes | performed |
| T23321 | 282-284 | IN | denotes | by |
| T23322 | 285-294 | NNP | denotes | Histoserv |
| T23323 | 295-299 | NNP | denotes | Inc. |
| R18630 | T23283 | T23284 | compound | Immunohistochemistry,Gnotobiotic |
| R18631 | T23284 | T23285 | compound | Gnotobiotic,piglets |
| R18632 | T23285 | T23287 | nsubjpass | piglets,infected |
| R18633 | T23286 | T23287 | auxpass | were,infected |
| R18634 | T23287 | T23287 | ROOT | infected,infected |
| R18635 | T23288 | T23287 | prep | with,infected |
| R18636 | T23289 | T23291 | compound | E.,O157 |
| R18637 | T23290 | T23291 | compound | coli,O157 |
| R18638 | T23291 | T23288 | pobj | O157,with |
| R18639 | T23292 | T23291 | punct | :,O157 |
| R18640 | T23293 | T23294 | compound | H7,strains |
| R18641 | T23294 | T23296 | nsubj | strains,described |
| R18642 | T23295 | T23296 | mark | as,described |
| R18643 | T23296 | T23287 | advcl | described,infected |
| R18644 | T23297 | T23296 | dobj | previously9,described |
| R18645 | T23298 | T23287 | punct | .,infected |
| R18646 | T23299 | T23301 | amod | Spiral,specimens |
| R18647 | T23300 | T23301 | compound | colon,specimens |
| R18648 | T23301 | T23303 | nsubjpass | specimens,collected |
| R18649 | T23302 | T23303 | auxpass | were,collected |
| R18650 | T23303 | T23303 | ROOT | collected,collected |
| R18651 | T23304 | T23303 | prep | at,collected |
| R18652 | T23305 | T23304 | pobj | necropsy,at |
| R18653 | T23306 | T23303 | cc | and,collected |
| R18654 | T23307 | T23303 | conj | embedded,collected |
| R18655 | T23308 | T23307 | prep | in,embedded |
| R18656 | T23309 | T23308 | pobj | paraffin,in |
| R18657 | T23310 | T23303 | punct | .,collected |
| R18658 | T23311 | T23312 | compound | Paraffin,sectioning |
| R18659 | T23312 | T23320 | nsubjpass | sectioning,performed |
| R18660 | T23313 | T23312 | cc | and,sectioning |
| R18661 | T23314 | T23320 | nsubjpass | immunohistochemical,performed |
| R18662 | T23315 | T23314 | prep | staining,immunohistochemical |
| R18663 | T23316 | T23314 | advcl | using,immunohistochemical |
| R18664 | T23317 | T23318 | amod | phospho-RPS3,antibody |
| R18665 | T23318 | T23316 | dobj | antibody,using |
| R18666 | T23319 | T23320 | auxpass | were,performed |
| R18667 | T23320 | T23320 | ROOT | performed,performed |
| R18668 | T23321 | T23320 | agent | by,performed |
| R18669 | T23322 | T23323 | compound | Histoserv,Inc. |
| R18670 | T23323 | T23321 | pobj | Inc.,by |
UBERON-AE
| Id | Subject | Object | Predicate | Lexical cue |
|---|---|---|---|---|
| T23238 | 117-122 | http://purl.obolibrary.org/obo/UBERON_0001155 | denotes | colon |
GO-MF
| Id | Subject | Object | Predicate | Lexical cue |
|---|---|---|---|---|
| T23328 | 258-266 | http://purl.obolibrary.org/obo/GO_0003823 | denotes | antibody |
GO-CC
| Id | Subject | Object | Predicate | Lexical cue |
|---|---|---|---|---|
| T23329 | 258-266 | http://purl.obolibrary.org/obo/GO_0019815 | denotes | antibody |
| T23330 | 258-266 | http://purl.obolibrary.org/obo/GO_0042571 | denotes | antibody |
sentences
| Id | Subject | Object | Predicate | Lexical cue |
|---|---|---|---|---|
| T23239 | 0-20 | Sentence | denotes | Immunohistochemistry |
| T23240 | 21-109 | Sentence | denotes | Gnotobiotic piglets were infected with E. coli O157:H7 strains as described previously9. |
| T23241 | 110-185 | Sentence | denotes | Spiral colon specimens were collected at necropsy and embedded in paraffin. |
| T23242 | 186-299 | Sentence | denotes | Paraffin sectioning and immunohistochemical staining using phospho-RPS3 antibody were performed by Histoserv Inc. |
| T252 | 0-20 | Sentence | denotes | Immunohistochemistry |
| T253 | 21-109 | Sentence | denotes | Gnotobiotic piglets were infected with E. coli O157:H7 strains as described previously9. |
| T254 | 110-185 | Sentence | denotes | Spiral colon specimens were collected at necropsy and embedded in paraffin. |
| T255 | 186-299 | Sentence | denotes | Paraffin sectioning and immunohistochemical staining using phospho-RPS3 antibody were performed by Histoserv Inc. |
bionlp-st-ge-2016-reference-tees
| Id | Subject | Object | Predicate | Lexical cue |
|---|---|---|---|---|
| T23331 | 176-184 | Protein | denotes | paraffin |
| T23332 | 253-257 | Protein | denotes | RPS3 |
| T23333 | 285-298 | Protein | denotes | Histoserv Inc |