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PMC:3062687 / 30984-31428 JSONTXT

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bionlp-st-ge-2016-uniprot

Id Subject Object Predicate Lexical cue
T21438 29-33 P23396 denotes RPS3
T21439 65-69 O14920 denotes IKKβ

pmc-enju-pas

Id Subject Object Predicate Lexical cue
T21367 0-8 NN denotes LC-MS/MS
T21368 9-17 NN denotes Analysis
T21369 18-21 NN denotes GST
T21370 22-24 CC denotes or
T21371 25-33 NN denotes GST-RPS3
T21372 34-37 VB denotes was
T21373 38-47 VB denotes incubated
T21374 48-52 IN denotes with
T21375 53-64 JJ denotes recombinant
T21376 65-69 NN denotes IKKβ
T21377 70-77 NN denotes protein
T21378 78-80 IN denotes as
T21379 81-90 VB denotes described
T21380 91-96 IN denotes above
T21381 97-99 IN denotes in
T21382 100-102 DT denotes an
T21383 103-105 FW denotes in
T21384 106-111 FW denotes vitro
T21385 112-118 NN denotes kinase
T21386 119-124 NN denotes assay
T21387 125-133 NN denotes reaction
T21388 134-143 VB denotes conducted
T21389 144-151 IN denotes without
T21390 152-161 NN denotes 32P-γ-ATP
T21391 162-170 NN denotes labeling
T21392 172-175 DT denotes The
T21393 176-184 NN denotes reaction
T21394 185-188 VB denotes was
T21395 189-198 VB denotes separated
T21396 199-201 IN denotes by
T21397 202-210 NN denotes SDS-PAGE
T21398 210-211 -COMMA- denotes ,
T21399 212-215 CC denotes and
T21400 216-219 DT denotes the
T21401 220-227 NN denotes protein
T21402 228-231 NN denotes gel
T21403 232-235 VB denotes was
T21404 236-243 VB denotes stained
T21405 244-248 IN denotes with
T21406 249-258 NNP denotes Colloidal
T21407 259-263 NNP denotes Blue
T21408 264-265 -LRB- denotes (
T21409 265-275 NN denotes Invitrogen
T21410 275-276 -RRB- denotes )
T21411 278-281 DT denotes The
T21412 282-295 VB denotes corresponding
T21413 296-303 NN denotes protein
T21414 304-313 NN denotes fragments
T21415 314-318 VB denotes were
T21416 319-326 VB denotes excised
T21417 327-330 CC denotes and
T21418 331-340 VB denotes subjected
T21419 341-343 TO denotes to
T21420 344-351 NN denotes trypsin
T21421 352-361 NN denotes digestion
T21422 362-365 CC denotes and
T21423 366-374 NN denotes LC-MS/MS
T21424 375-377 IN denotes at
T21425 378-381 DT denotes the
T21426 382-386 NNP denotes Yale
T21427 387-393 NNP denotes Cancer
T21428 394-400 NNP denotes Center
T21429 401-405 NNP denotes Mass
T21430 406-418 NNP denotes Spectrometry
T21431 419-427 NNP denotes Resource
T21432 428-429 -LRB- denotes (
T21433 429-432 NNP denotes New
T21434 433-438 NNP denotes Haven
T21435 438-439 -COMMA- denotes ,
T21436 440-442 NN denotes CT
T21437 442-443 -RRB- denotes )
R16993 T21368 T21367 arg1Of Analysis,LC-MS/MS
R16994 T21369 T21370 arg1Of GST,or
R16995 T21370 T21372 arg1Of or,was
R16996 T21370 T21373 arg2Of or,incubated
R16997 T21371 T21370 arg2Of GST-RPS3,or
R16998 T21373 T21372 arg2Of incubated,was
R16999 T21373 T21374 arg1Of incubated,with
R17000 T21373 T21378 arg1Of incubated,as
R17001 T21377 T21374 arg2Of protein,with
R17002 T21377 T21375 arg1Of protein,recombinant
R17003 T21377 T21376 arg1Of protein,IKKβ
R17004 T21379 T21378 arg2Of described,as
R17005 T21379 T21380 arg1Of described,above
R17006 T21379 T21381 arg1Of described,in
R17007 T21384 T21383 arg1Of vitro,in
R17008 T21387 T21381 arg2Of reaction,in
R17009 T21387 T21382 arg1Of reaction,an
R17010 T21387 T21384 arg1Of reaction,vitro
R17011 T21387 T21385 arg1Of reaction,kinase
R17012 T21387 T21386 arg1Of reaction,assay
R17013 T21387 T21388 arg2Of reaction,conducted
R17014 T21388 T21389 arg1Of conducted,without
R17015 T21391 T21389 arg2Of labeling,without
R17016 T21391 T21390 arg1Of labeling,32P-γ-ATP
R17017 T21393 T21392 arg1Of reaction,The
R17018 T21393 T21394 arg1Of reaction,was
R17019 T21393 T21395 arg2Of reaction,separated
R17020 T21395 T21394 arg2Of separated,was
R17021 T21395 T21399 arg1Of separated,and
R17022 T21397 T21395 arg1Of SDS-PAGE,separated
R17023 T21397 T21396 arg2Of SDS-PAGE,by
R17024 T21399 T21398 arg1Of and,","
R17025 T21402 T21400 arg1Of gel,the
R17026 T21402 T21401 arg1Of gel,protein
R17027 T21402 T21403 arg1Of gel,was
R17028 T21402 T21404 arg2Of gel,stained
R17029 T21404 T21399 arg2Of stained,and
R17030 T21404 T21403 arg2Of stained,was
R17031 T21404 T21405 arg1Of stained,with
R17032 T21407 T21405 arg2Of Blue,with
R17033 T21407 T21406 arg1Of Blue,Colloidal
R17034 T21407 T21408 arg1Of Blue,(
R17035 T21409 T21408 arg2Of Invitrogen,(
R17036 T21410 T21408 arg3Of ),(
R17037 T21414 T21411 arg1Of fragments,The
R17038 T21414 T21412 arg1Of fragments,corresponding
R17039 T21414 T21413 arg1Of fragments,protein
R17040 T21414 T21415 arg1Of fragments,were
R17041 T21414 T21416 arg2Of fragments,excised
R17042 T21414 T21418 arg2Of fragments,subjected
R17043 T21416 T21417 arg1Of excised,and
R17044 T21417 T21415 arg2Of and,were
R17045 T21418 T21417 arg2Of subjected,and
R17046 T21418 T21419 arg1Of subjected,to
R17047 T21421 T21420 arg1Of digestion,trypsin
R17048 T21421 T21422 arg1Of digestion,and
R17049 T21422 T21419 arg2Of and,to
R17050 T21422 T21424 arg1Of and,at
R17051 T21423 T21422 arg2Of LC-MS/MS,and
R17052 T21431 T21424 arg2Of Resource,at
R17053 T21431 T21425 arg1Of Resource,the
R17054 T21431 T21426 arg1Of Resource,Yale
R17055 T21431 T21427 arg1Of Resource,Cancer
R17056 T21431 T21428 arg1Of Resource,Center
R17057 T21431 T21429 arg1Of Resource,Mass
R17058 T21431 T21430 arg1Of Resource,Spectrometry
R17059 T21431 T21432 arg1Of Resource,(
R17060 T21434 T21432 arg2Of Haven,(
R17061 T21434 T21433 arg1Of Haven,New
R17062 T21434 T21435 arg1Of Haven,","
R17063 T21436 T21435 arg2Of CT,","
R17064 T21437 T21432 arg3Of ),(

bionlp-st-ge-2016-spacy-parsed

Id Subject Object Predicate Lexical cue
T21440 0-8 NNP denotes LC-MS/MS
T21441 9-17 NNP denotes Analysis
T21442 18-21 NNP denotes GST
T21443 22-24 CC denotes or
T21444 25-33 NNP denotes GST-RPS3
T21445 34-37 VBD denotes was
T21446 38-47 VBN denotes incubated
T21447 48-52 IN denotes with
T21448 53-64 JJ denotes recombinant
T21449 65-69 NNP denotes IKKβ
T21450 70-77 NN denotes protein
T21451 78-80 IN denotes as
T21452 81-90 VBN denotes described
T21453 91-96 IN denotes above
T21454 97-99 IN denotes in
T21455 100-102 DT denotes an
T21456 103-105 IN denotes in
T21457 106-111 NN denotes vitro
T21458 112-118 NN denotes kinase
T21459 119-124 NN denotes assay
T21460 125-133 NN denotes reaction
T21461 134-143 VBN denotes conducted
T21462 144-151 IN denotes without
T21463 152-161 NNP denotes 32P-γ-ATP
T21464 162-170 VBG denotes labeling
T21465 170-171 . denotes .
T21466 172-175 DT denotes The
T21467 176-184 NN denotes reaction
T21468 185-188 VBD denotes was
T21469 189-198 VBN denotes separated
T21470 199-201 IN denotes by
T21471 202-210 NNP denotes SDS-PAGE
T21472 210-211 , denotes ,
T21473 212-215 CC denotes and
T21474 216-219 DT denotes the
T21475 220-227 NN denotes protein
T21476 228-231 NN denotes gel
T21477 232-235 VBD denotes was
T21478 236-243 VBN denotes stained
T21479 244-248 IN denotes with
T21480 249-258 NNP denotes Colloidal
T21481 259-263 NNP denotes Blue
T21482 264-265 -LRB- denotes (
T21483 265-275 NNP denotes Invitrogen
T21484 275-276 -RRB- denotes )
T21485 276-277 . denotes .
T21486 278-281 DT denotes The
T21487 282-295 JJ denotes corresponding
T21488 296-303 NN denotes protein
T21489 304-313 NNS denotes fragments
T21490 314-318 VBD denotes were
T21491 319-326 VBN denotes excised
T21492 327-330 CC denotes and
T21493 331-340 VBN denotes subjected
T21494 341-343 TO denotes to
T21495 344-351 VB denotes trypsin
T21496 352-361 NN denotes digestion
T21497 362-365 CC denotes and
T21498 366-374 NN denotes LC-MS/MS
T21499 375-377 IN denotes at
T21500 378-381 DT denotes the
T21501 382-386 NNP denotes Yale
T21502 387-393 NNP denotes Cancer
T21503 394-400 NNP denotes Center
T21504 401-405 NNP denotes Mass
T21505 406-418 NNP denotes Spectrometry
T21506 419-427 NNP denotes Resource
T21507 428-429 -LRB- denotes (
T21508 429-432 NNP denotes New
T21509 433-438 NNP denotes Haven
T21510 438-439 , denotes ,
T21511 440-442 NNP denotes CT
T21512 442-443 -RRB- denotes )
T21513 443-444 . denotes .
R17065 T21440 T21442 compound LC-MS/MS,GST
R17066 T21441 T21442 compound Analysis,GST
R17067 T21442 T21446 nsubjpass GST,incubated
R17068 T21443 T21442 cc or,GST
R17069 T21444 T21442 conj GST-RPS3,GST
R17070 T21445 T21446 auxpass was,incubated
R17071 T21446 T21446 ROOT incubated,incubated
R17072 T21447 T21446 prep with,incubated
R17073 T21448 T21450 compound recombinant,protein
R17074 T21449 T21450 compound IKKβ,protein
R17075 T21450 T21447 pobj protein,with
R17076 T21451 T21452 mark as,described
R17077 T21452 T21446 advcl described,incubated
R17078 T21453 T21452 advmod above,described
R17079 T21454 T21452 prep in,described
R17080 T21455 T21454 pcomp an,in
R17081 T21456 T21455 prep in,an
R17082 T21457 T21460 amod vitro,reaction
R17083 T21458 T21460 amod kinase,reaction
R17084 T21459 T21460 compound assay,reaction
R17085 T21460 T21456 pobj reaction,in
R17086 T21461 T21460 acl conducted,reaction
R17087 T21462 T21461 prep without,conducted
R17088 T21463 T21464 compound 32P-γ-ATP,labeling
R17089 T21464 T21462 pobj labeling,without
R17090 T21465 T21446 punct .,incubated
R17091 T21466 T21467 det The,reaction
R17092 T21467 T21469 nsubjpass reaction,separated
R17093 T21468 T21469 auxpass was,separated
R17094 T21469 T21469 ROOT separated,separated
R17095 T21470 T21469 agent by,separated
R17096 T21471 T21470 pobj SDS-PAGE,by
R17097 T21472 T21469 punct ",",separated
R17098 T21473 T21469 cc and,separated
R17099 T21474 T21476 det the,gel
R17100 T21475 T21476 compound protein,gel
R17101 T21476 T21478 nsubjpass gel,stained
R17102 T21477 T21478 auxpass was,stained
R17103 T21478 T21469 conj stained,separated
R17104 T21479 T21478 prep with,stained
R17105 T21480 T21481 compound Colloidal,Blue
R17106 T21481 T21479 pobj Blue,with
R17107 T21482 T21481 punct (,Blue
R17108 T21483 T21481 appos Invitrogen,Blue
R17109 T21484 T21481 punct ),Blue
R17110 T21485 T21478 punct .,stained
R17111 T21486 T21489 det The,fragments
R17112 T21487 T21489 amod corresponding,fragments
R17113 T21488 T21489 compound protein,fragments
R17114 T21489 T21491 nsubjpass fragments,excised
R17115 T21490 T21491 auxpass were,excised
R17116 T21491 T21491 ROOT excised,excised
R17117 T21492 T21491 cc and,excised
R17118 T21493 T21491 conj subjected,excised
R17119 T21494 T21495 aux to,trypsin
R17120 T21495 T21493 xcomp trypsin,subjected
R17121 T21496 T21495 dobj digestion,trypsin
R17122 T21497 T21496 cc and,digestion
R17123 T21498 T21496 conj LC-MS/MS,digestion
R17124 T21499 T21495 prep at,trypsin
R17125 T21500 T21503 det the,Center
R17126 T21501 T21503 compound Yale,Center
R17127 T21502 T21503 compound Cancer,Center
R17128 T21503 T21506 compound Center,Resource
R17129 T21504 T21506 compound Mass,Resource
R17130 T21505 T21506 compound Spectrometry,Resource
R17131 T21506 T21499 pobj Resource,at
R17132 T21507 T21506 punct (,Resource
R17133 T21508 T21509 compound New,Haven
R17134 T21509 T21506 appos Haven,Resource
R17135 T21510 T21509 punct ",",Haven
R17136 T21511 T21509 conj CT,Haven
R17137 T21512 T21506 punct ),Resource
R17138 T21513 T21491 punct .,excised

GO-BP

Id Subject Object Predicate Lexical cue
T21520 352-361 http://purl.obolibrary.org/obo/GO_0007586 denotes digestion

sentences

Id Subject Object Predicate Lexical cue
T21363 0-17 Sentence denotes LC-MS/MS Analysis
T21364 18-171 Sentence denotes GST or GST-RPS3 was incubated with recombinant IKKβ protein as described above in an in vitro kinase assay reaction conducted without 32P-γ-ATP labeling.
T21365 172-277 Sentence denotes The reaction was separated by SDS-PAGE, and the protein gel was stained with Colloidal Blue (Invitrogen).
T21366 278-444 Sentence denotes The corresponding protein fragments were excised and subjected to trypsin digestion and LC-MS/MS at the Yale Cancer Center Mass Spectrometry Resource (New Haven, CT).
T213 0-17 Sentence denotes LC-MS/MS Analysis
T214 18-171 Sentence denotes GST or GST-RPS3 was incubated with recombinant IKKβ protein as described above in an in vitro kinase assay reaction conducted without 32P-γ-ATP labeling.
T215 172-277 Sentence denotes The reaction was separated by SDS-PAGE, and the protein gel was stained with Colloidal Blue (Invitrogen).
T216 278-444 Sentence denotes The corresponding protein fragments were excised and subjected to trypsin digestion and LC-MS/MS at the Yale Cancer Center Mass Spectrometry Resource (New Haven, CT).

events-check-again

Id Subject Object Predicate Lexical cue
T21532 25-33 Protein denotes GST-RPS3
T21533 65-69 Protein denotes IKKβ

bionlp-st-ge-2016-reference-tees

Id Subject Object Predicate Lexical cue
T21521 18-21 Protein denotes GST
T21522 25-28 Protein denotes GST
T21523 29-33 Protein denotes RPS3
T21524 53-77 Protein denotes recombinant IKKβ protein
T21525 344-351 Protein denotes trypsin

bionlp-st-ge-2016-reference

Id Subject Object Predicate Lexical cue
T21361 25-33 Protein denotes GST-RPS3
T21362 65-69 Protein denotes IKKβ

test2

Id Subject Object Predicate Lexical cue
T21359 25-33 Protein denotes GST-RPS3
T21360 65-69 Protein denotes IKKβ