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PMC:2626671 / 1697-2107 JSONTXT

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pmc-enju-pas

Id Subject Object Predicate Lexical cue
T1593 3-18 NN denotes differentiation
T1594 19-20 -LRB- denotes (
T1595 20-24 NN denotes 5, 6
T1596 24-25 -RRB- denotes )
T1597 25-30 NN denotes . The
T1598 31-36 NN denotes T-box
T1599 37-50 NN denotes transcription
T1600 51-58 NN denotes factors
T1601 59-71 NN denotes Eomesodermin
T1602 72-73 -LRB- denotes (
T1603 73-78 NN denotes Eomes
T1604 78-79 -RRB- denotes )
T1605 80-83 CC denotes and
T1606 84-89 NN denotes T-bet
T1607 90-93 VB denotes are
T1608 94-100 VB denotes needed
T1609 101-104 IN denotes for
T1610 105-114 JJ denotes important
T1611 115-122 NN denotes aspects
T1612 123-125 IN denotes of
T1613 126-134 NN denotes effector
T1614 135-138 CC denotes and
T1615 139-145 NN denotes memory
T1616 146-149 NN denotes CTL
T1617 150-165 NN denotes differentiation
T1618 166-167 -LRB- denotes (
T1619 167-168 CD denotes 7
T1620 168-169 -RRB- denotes )
T1621 171-173 IN denotes In
T1622 174-184 JJ denotes uninfected
T1623 185-189 NN denotes mice
T1624 189-190 -COMMA- denotes ,
T1625 191-199 NN denotes compound
T1626 200-208 NN denotes deletion
T1627 209-211 IN denotes of
T1628 212-221 NN denotes the Tbx21
T1629 222-223 -LRB- denotes (
T1630 223-231 VB denotes encoding
T1631 232-237 NN denotes T-bet
T1632 237-238 -RRB- denotes )
T1633 239-261 NN denotes and eomesodermin genes
T1634 262-264 VB denotes is
T1635 265-275 VB denotes associated
T1636 276-280 IN denotes with
T1637 281-282 DT denotes a
T1638 283-292 JJ denotes selective
T1639 293-297 NN denotes loss
T1640 298-300 IN denotes of
T1641 301-307 NN denotes CD8+ T
T1642 308-313 NN denotes cells
T1643 314-318 IN denotes with
T1644 319-321 DT denotes an
T1645 322-333 NN denotes IL-2Rβ–high
T1646 333-334 -COMMA- denotes ,
T1647 335-341 NN denotes memory
T1648 342-351 NN denotes phenotype
T1649 352-353 -LRB- denotes (
T1650 353-354 CD denotes 8
T1651 354-355 -RRB- denotes )
T1652 357-361 NN denotes Mice
T1653 362-371 JJ denotes deficient
T1654 372-375 IN denotes for
T1655 376-380 CC denotes both
T1656 381-386 NN denotes T-bet
T1657 387-390 CC denotes and
T1658 391-396 NN denotes Eomes
T1659 397-399 IN denotes in
T1660 400-401 NN denotes T
T1661 402-407 NN denotes cells
R1320 T1593 T1594 arg1Of differentiation,(
R1321 T1595 T1594 arg2Of "5, 6",(
R1322 T1596 T1594 arg3Of ),(
R1324 T1604 T1602 arg3Of ),(
R1325 T1601 T1593 arg1Of Eomesodermin,differentiation
R1326 T1601 T1597 arg1Of Eomesodermin,". The"
R1327 T1601 T1598 arg1Of Eomesodermin,T-box
R1330 T1601 T1599 arg1Of Eomesodermin,transcription
R1331 T1601 T1600 arg1Of Eomesodermin,factors
R1332 T1606 T1607 arg1Of T-bet,are
R1333 T1606 T1608 arg2Of T-bet,needed
R1334 T1601 T1602 arg1Of Eomesodermin,(
R1335 T1603 T1602 arg2Of Eomes,(
R1336 T1608 T1605 arg2Of needed,and
R1337 T1608 T1607 arg2Of needed,are
R1338 T1608 T1609 arg1Of needed,for
R1339 T1611 T1610 arg1Of aspects,important
R1340 T1611 T1612 arg1Of aspects,of
R1341 T1611 T1614 arg1Of aspects,and
R1342 T1613 T1612 arg2Of effector,of
R1344 T1614 T1609 arg2Of and,for
R1345 T1617 T1614 arg2Of differentiation,and
R1346 T1617 T1615 arg1Of differentiation,memory
R1347 T1617 T1616 arg1Of differentiation,CTL
R1348 T1617 T1618 arg1Of differentiation,(
R1349 T1619 T1618 arg2Of 7,(
R1350 T1620 T1618 arg3Of ),(
R1351 T1623 T1621 arg2Of mice,In
R1352 T1623 T1622 arg1Of mice,uninfected
R1355 T1626 T1625 arg1Of deletion,compound
R1356 T1626 T1627 arg1Of deletion,of
R1357 T1626 T1634 arg1Of deletion,is
R1358 T1626 T1635 arg2Of deletion,associated
R1363 T1631 T1629 arg2Of T-bet,(
R1364 T1631 T1630 arg1Of T-bet,encoding
R1365 T1632 T1629 arg3Of ),(
R1367 T1633 T1627 arg2Of and eomesodermin genes,of
R1368 T1633 T1628 arg1Of and eomesodermin genes,the Tbx21
R1369 T1633 T1629 arg1Of and eomesodermin genes,(
R1371 T1635 T1621 arg1Of associated,In
R1372 T1635 T1624 arg1Of associated,","
R1373 T1635 T1634 arg2Of associated,is
R1374 T1635 T1636 arg1Of associated,with
R1375 T1639 T1636 arg2Of loss,with
R1378 T1639 T1637 arg1Of loss,a
R1379 T1639 T1638 arg1Of loss,selective
R1380 T1639 T1640 arg1Of loss,of
R1381 T1639 T1643 arg1Of loss,with
R1382 T1642 T1640 arg2Of cells,of
R1383 T1642 T1641 arg1Of cells,CD8+ T
R1386 T1645 T1643 arg2Of IL-2Rβ–high,with
R1387 T1645 T1644 arg1Of IL-2Rβ–high,an
R1388 T1645 T1646 arg1Of IL-2Rβ–high,","
R1392 T1648 T1646 arg2Of phenotype,","
R1393 T1648 T1647 arg1Of phenotype,memory
R1394 T1648 T1649 arg1Of phenotype,(
R1395 T1650 T1649 arg2Of 8,(
R1396 T1651 T1649 arg3Of ),(
R1397 T1652 T1653 arg1Of Mice,deficient
R1403 T1653 T1654 arg1Of deficient,for
R1404 T1656 T1657 arg1Of T-bet,and
R1405 T1657 T1654 arg2Of and,for
R1406 T1657 T1655 arg1Of and,both
R1407 T1657 T1659 arg1Of and,in
R1408 T1658 T1657 arg2Of Eomes,and
R1411 T1661 T1659 arg2Of cells,in
R1412 T1661 T1660 arg1Of cells,T

bionlp-st-ge-2016-spacy-parsed

Id Subject Object Predicate Lexical cue
T974 3-18 NN denotes differentiation
T975 19-20 -LRB- denotes (
T976 20-24 CD denotes 5, 6
T977 24-25 -RRB- denotes )
T978 25-26 . denotes .
T979 27-30 DT denotes The
T980 31-36 NN denotes T-box
T981 37-50 NN denotes transcription
T982 51-58 NNS denotes factors
T983 59-71 NNP denotes Eomesodermin
T984 72-73 -LRB- denotes (
T985 73-78 NNP denotes Eomes
T986 78-79 -RRB- denotes )
T987 80-83 CC denotes and
T988 84-89 NNP denotes T-bet
T989 90-93 VBP denotes are
T990 94-100 VBN denotes needed
T991 101-104 IN denotes for
T992 105-114 JJ denotes important
T993 115-122 NNS denotes aspects
T994 123-125 IN denotes of
T995 126-134 NN denotes effector
T996 135-138 CC denotes and
T997 139-145 NN denotes memory
T998 146-149 NNP denotes CTL
T999 150-165 NN denotes differentiation
T1000 166-167 -LRB- denotes (
T1001 167-168 CD denotes 7
T1002 168-169 -RRB- denotes )
T1003 169-170 . denotes .
T1004 171-173 IN denotes In
T1005 174-184 JJ denotes uninfected
T1006 185-189 NNS denotes mice
T1007 189-190 , denotes ,
T1008 191-199 NN denotes compound
T1009 200-208 NN denotes deletion
T1010 209-211 IN denotes of
T1011 212-221 NNP denotes the Tbx21
T1012 222-223 -LRB- denotes (
T1013 223-231 VBG denotes encoding
T1014 232-237 NNP denotes T-bet
T1015 237-238 -RRB- denotes )
T1016 239-261 NNS denotes and eomesodermin genes
T1017 262-264 VBZ denotes is
T1018 265-275 VBN denotes associated
T1019 276-280 IN denotes with
T1020 281-282 DT denotes a
T1021 283-292 JJ denotes selective
T1022 293-297 NN denotes loss
T1023 298-300 IN denotes of
T1024 301-304 CD denotes CD8
T1025 304-305 CD denotes +
T1026 306-307 NNP denotes T
T1027 308-313 NNS denotes cells
T1028 314-318 IN denotes with
T1029 319-321 DT denotes an
T1030 322-328 NN denotes IL-2Rβ
T1031 329-333 JJ denotes high
T1032 333-334 , denotes ,
T1033 335-341 NN denotes memory
T1034 342-351 NN denotes phenotype
T1035 352-353 -LRB- denotes (
T1036 353-354 CD denotes 8
T1037 354-355 -RRB- denotes )
T1038 355-356 . denotes .
T1039 357-361 NNP denotes Mice
T1040 362-371 NN denotes deficient
T1041 372-375 IN denotes for
T1042 376-380 DT denotes both
T1043 381-386 NNP denotes T-bet
T1044 387-390 CC denotes and
T1045 391-396 NNP denotes Eomes
T1046 397-399 IN denotes in
T1047 400-401 NNP denotes T
T1048 402-407 NNS denotes cells
R741 T975 T974 punct (,differentiation
R742 T976 T974 appos "5, 6",differentiation
R743 T977 T974 punct ),differentiation
R745 T979 T982 det The,factors
R746 T980 T982 amod T-box,factors
R747 T981 T982 compound transcription,factors
R748 T982 T990 nsubjpass factors,needed
R749 T983 T990 nsubjpass Eomesodermin,needed
R750 T984 T985 punct (,Eomes
R751 T985 T983 appos Eomes,Eomesodermin
R752 T986 T985 punct ),Eomes
R753 T987 T983 cc and,Eomesodermin
R754 T988 T983 conj T-bet,Eomesodermin
R755 T989 T990 auxpass are,needed
R756 T990 T990 ROOT needed,needed
R757 T991 T990 prep for,needed
R758 T992 T993 amod important,aspects
R759 T993 T991 pobj aspects,for
R760 T994 T993 prep of,aspects
R761 T995 T994 pobj effector,of
R762 T996 T995 cc and,effector
R763 T997 T999 compound memory,differentiation
R764 T998 T999 compound CTL,differentiation
R765 T999 T995 conj differentiation,effector
R766 T1000 T1001 punct (,7
R767 T1001 T999 npadvmod 7,differentiation
R768 T1002 T990 punct ),needed
R769 T1003 T990 punct .,needed
R770 T1004 T1018 prep In,associated
R771 T1005 T1006 amod uninfected,mice
R772 T1006 T1004 pobj mice,In
R773 T1007 T1018 punct ",",associated
R774 T1008 T1009 compound compound,deletion
R775 T1009 T1018 nsubjpass deletion,associated
R776 T1010 T1009 prep of,deletion
R777 T1011 T1010 pobj the Tbx21,of
R778 T1012 T1013 punct (,encoding
R779 T1013 T1016 nmod encoding,and eomesodermin genes
R780 T1014 T1013 dobj T-bet,encoding
R781 T1015 T1016 punct ),and eomesodermin genes
R782 T1016 T1009 nmod and eomesodermin genes,deletion
R783 T1017 T1018 auxpass is,associated
R784 T1018 T1018 ROOT associated,associated
R785 T1019 T1018 prep with,associated
R786 T1020 T1022 det a,loss
R787 T1021 T1022 amod selective,loss
R788 T1022 T1019 pobj loss,with
R789 T1023 T1022 prep of,loss
R790 T1024 T1027 nummod CD8,cells
R791 T1025 T1027 nummod +,cells
R792 T1026 T1027 compound T,cells
R793 T1027 T1023 pobj cells,of
R794 T1028 T1022 prep with,loss
R795 T1029 T1030 det an,IL-2Rβ
R796 T1030 T1028 pobj IL-2Rβ,with
R797 T1031 T1030 amod high,IL-2Rβ
R798 T1032 T1031 punct ",",high
R799 T1033 T1034 compound memory,phenotype
R800 T1034 T1030 appos phenotype,IL-2Rβ
R801 T1035 T1036 punct (,8
R802 T1036 T1034 parataxis 8,phenotype
R803 T1037 T1036 punct ),8
R804 T1038 T1018 punct .,associated
R805 T1039 T1040 npadvmod Mice,deficient
R807 T1041 T1040 prep for,deficient
R808 T1042 T1043 det both,T-bet
R809 T1043 T1041 pobj T-bet,for
R810 T1044 T1043 cc and,T-bet
R811 T1045 T1043 conj Eomes,T-bet
R812 T1046 T1040 prep in,deficient
R813 T1047 T1048 compound T,cells
R814 T1048 T1046 pobj cells,in

GO-BP

Id Subject Object Predicate Lexical cue
T872 37-50 http://purl.obolibrary.org/obo/GO_0006351 denotes transcription
T876 139-145 http://purl.obolibrary.org/obo/GO_0007613 denotes memory
T877 335-341 http://purl.obolibrary.org/obo/GO_0007613 denotes memory

GO-CC

Id Subject Object Predicate Lexical cue
T2081 308-313 http://purl.obolibrary.org/obo/GO_0005623 denotes cells
T2082 402-407 http://purl.obolibrary.org/obo/GO_0005623 denotes cells

sentences

Id Subject Object Predicate Lexical cue
T831 171-356 Sentence denotes In uninfected mice, compound deletion of the Tbx21 (encoding T-bet) and eomesodermin genes is associated with a selective loss of CD8+ T cells with an IL-2Rβ–high, memory phenotype (8).
T12 27-170 Sentence denotes The T-box transcription factors Eomesodermin (Eomes) and T-bet are needed for important aspects of effector and memory CTL differentiation (7).
T13 171-356 Sentence denotes In uninfected mice, compound deletion of the Tbx21 (encoding T-bet) and eomesodermin genes is associated with a selective loss of CD8+ T cells with an IL-2Rβ–high, memory phenotype (8).

events-check-again

Id Subject Object Predicate Lexical cue
T2564 59-71 Protein denotes Eomesodermin
T2565 73-78 Protein denotes Eomes
T2566 84-89 Protein denotes T-bet
T2567 200-208 Negative_regulation denotes deletion
T2568 200-208 Negative_regulation denotes deletion
T2569 216-221 Protein denotes Tbx21
T2570 232-237 Protein denotes T-bet
T2571 243-255 Protein denotes eomesodermin
T2572 301-304 Protein denotes CD8
T2573 322-328 Protein denotes IL-2Rβ
T2574 362-371 Negative_regulation denotes deficient
T2575 362-371 Negative_regulation denotes deficient
T2576 381-386 Protein denotes T-bet
T2577 391-396 Protein denotes Eomes
R2003 T2565 T2564 equivalentTo Eomes,Eomesodermin
R2007 T2569 T2567 themeOf Tbx21,deletion
R2008 T2570 T2569 equivalentTo T-bet,Tbx21
R2009 T2571 T2568 themeOf eomesodermin,deletion
R2011 T2576 T2574 themeOf T-bet,deficient
R2012 T2577 T2575 themeOf Eomes,deficient

bionlp-st-ge-2016-reference

Id Subject Object Predicate Lexical cue
T1425 200-208 Negative_regulation denotes deletion
T1436 200-208 Negative_regulation denotes deletion
T1440 362-371 Negative_regulation denotes deficient
T1441 362-371 Negative_regulation denotes deficient
T1446 232-237 Protein denotes T-bet
T1447 243-255 Protein denotes eomesodermin
T1448 301-304 Protein denotes CD8
T1449 381-386 Protein denotes T-bet
T1450 391-396 Protein denotes Eomes
T1497 59-71 Protein denotes Eomesodermin
T1498 73-78 Protein denotes Eomes
T1499 84-89 Protein denotes T-bet
T1501 216-221 Protein denotes Tbx21
T1502 322-328 Protein denotes IL-2Rβ
R1229 T1501 T1425 themeOf Tbx21,deletion
R1183 T1447 T1436 themeOf eomesodermin,deletion
R1184 T1449 T1440 themeOf T-bet,deficient
R1185 T1450 T1441 themeOf Eomes,deficient
R1182 T1446 T1501 equivalentTo T-bet,Tbx21
R1224 T1498 T1497 equivalentTo Eomes,Eomesodermin

bionlp-st-ge-2016-uniprot

Id Subject Object Predicate Lexical cue
T2006 73-78 O95936 denotes Eomes
T2007 84-89 Q9UL17 denotes T-bet
T2008 232-237 Q9UL17 denotes T-bet
T2009 301-304 P10966 denotes CD8
T2010 301-304 P01732 denotes CD8
T2011 381-386 Q9UL17 denotes T-bet
T2012 391-396 O95936 denotes Eomes

test2

Id Subject Object Predicate Lexical cue Negation
T761 391-396 Protein denotes Eomes
T749 59-71 Protein denotes Eomesodermin
T750 73-78 Protein denotes Eomes
T751 84-89 Protein denotes T-bet true
T752 200-208 Negative_regulation denotes deletion true
T753 212-221 Protein denotes the Tbx21 true
T754 232-237 Protein denotes T-bet
T755 239-261 Protein denotes and eomesodermin genes
T756 265-275 Binding denotes associated
T757 301-304 Protein denotes CD8
T758 322-328 Protein denotes IL-2Rβ
T759 362-371 Negative_regulation denotes deficient
T760 381-386 Protein denotes T-bet
R595 T750 T749 equivalentTo Eomes,Eomesodermin
R596 T753 T752 themeOf the Tbx21,deletion
R597 T754 T753 equivalentTo T-bet,the Tbx21
R598 T755 T756 themeOf and eomesodermin genes,associated
R599 T755 T752 themeOf and eomesodermin genes,deletion
R600 T760 T759 themeOf T-bet,deficient
R601 T761 T759 themeOf Eomes,deficient