PMC:2626671 / 1697-2107 JSONTXT

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    pmc-enju-pas

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    bionlp-st-ge-2016-spacy-parsed

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    GO-BP

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    GO-CC

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    sentences

    {"project":"sentences","denotations":[{"id":"T831","span":{"begin":171,"end":356},"obj":"Sentence"},{"id":"T12","span":{"begin":27,"end":170},"obj":"Sentence"},{"id":"T13","span":{"begin":171,"end":356},"obj":"Sentence"}],"namespaces":[{"prefix":"_base","uri":"http://pubannotation.org/ontology/tao.owl#"}],"text":"TL differentiation (5, 6).\nThe T-box transcription factors Eomesodermin (Eomes) and T-bet are needed for important aspects of effector and memory CTL differentiation (7). In uninfected mice, compound deletion of the Tbx21 (encoding T-bet) and eomesodermin genes is associated with a selective loss of CD8+ T cells with an IL-2Rβ–high, memory phenotype (8). Mice deficient for both T-bet and Eomes in T cells ha"}

    events-check-again

    {"project":"events-check-again","denotations":[{"id":"T2564","span":{"begin":59,"end":71},"obj":"Protein"},{"id":"T2565","span":{"begin":73,"end":78},"obj":"Protein"},{"id":"T2566","span":{"begin":84,"end":89},"obj":"Protein"},{"id":"T2567","span":{"begin":200,"end":208},"obj":"Negative_regulation"},{"id":"T2568","span":{"begin":200,"end":208},"obj":"Negative_regulation"},{"id":"T2569","span":{"begin":216,"end":221},"obj":"Protein"},{"id":"T2570","span":{"begin":232,"end":237},"obj":"Protein"},{"id":"T2571","span":{"begin":243,"end":255},"obj":"Protein"},{"id":"T2572","span":{"begin":301,"end":304},"obj":"Protein"},{"id":"T2573","span":{"begin":322,"end":328},"obj":"Protein"},{"id":"T2574","span":{"begin":362,"end":371},"obj":"Negative_regulation"},{"id":"T2575","span":{"begin":362,"end":371},"obj":"Negative_regulation"},{"id":"T2576","span":{"begin":381,"end":386},"obj":"Protein"},{"id":"T2577","span":{"begin":391,"end":396},"obj":"Protein"}],"relations":[{"id":"R2003","pred":"equivalentTo","subj":"T2565","obj":"T2564"},{"id":"R2007","pred":"themeOf","subj":"T2569","obj":"T2567"},{"id":"R2008","pred":"equivalentTo","subj":"T2570","obj":"T2569"},{"id":"R2009","pred":"themeOf","subj":"T2571","obj":"T2568"},{"id":"R2011","pred":"themeOf","subj":"T2576","obj":"T2574"},{"id":"R2012","pred":"themeOf","subj":"T2577","obj":"T2575"}],"text":"TL differentiation (5, 6).\nThe T-box transcription factors Eomesodermin (Eomes) and T-bet are needed for important aspects of effector and memory CTL differentiation (7). In uninfected mice, compound deletion of the Tbx21 (encoding T-bet) and eomesodermin genes is associated with a selective loss of CD8+ T cells with an IL-2Rβ–high, memory phenotype (8). Mice deficient for both T-bet and Eomes in T cells ha"}

    bionlp-st-ge-2016-reference

    {"project":"bionlp-st-ge-2016-reference","denotations":[{"id":"T1425","span":{"begin":200,"end":208},"obj":"Negative_regulation"},{"id":"T1436","span":{"begin":200,"end":208},"obj":"Negative_regulation"},{"id":"T1440","span":{"begin":362,"end":371},"obj":"Negative_regulation"},{"id":"T1441","span":{"begin":362,"end":371},"obj":"Negative_regulation"},{"id":"T1446","span":{"begin":232,"end":237},"obj":"Protein"},{"id":"T1447","span":{"begin":243,"end":255},"obj":"Protein"},{"id":"T1448","span":{"begin":301,"end":304},"obj":"Protein"},{"id":"T1449","span":{"begin":381,"end":386},"obj":"Protein"},{"id":"T1450","span":{"begin":391,"end":396},"obj":"Protein"},{"id":"T1497","span":{"begin":59,"end":71},"obj":"Protein"},{"id":"T1498","span":{"begin":73,"end":78},"obj":"Protein"},{"id":"T1499","span":{"begin":84,"end":89},"obj":"Protein"},{"id":"T1501","span":{"begin":216,"end":221},"obj":"Protein"},{"id":"T1502","span":{"begin":322,"end":328},"obj":"Protein"}],"relations":[{"id":"R1229","pred":"themeOf","subj":"T1501","obj":"T1425"},{"id":"R1183","pred":"themeOf","subj":"T1447","obj":"T1436"},{"id":"R1184","pred":"themeOf","subj":"T1449","obj":"T1440"},{"id":"R1185","pred":"themeOf","subj":"T1450","obj":"T1441"},{"id":"R1182","pred":"equivalentTo","subj":"T1446","obj":"T1501"},{"id":"R1224","pred":"equivalentTo","subj":"T1498","obj":"T1497"}],"namespaces":[{"prefix":"_base","uri":"http://bionlp.dbcls.jp/ontology/ge.owl#"}],"text":"TL differentiation (5, 6).\nThe T-box transcription factors Eomesodermin (Eomes) and T-bet are needed for important aspects of effector and memory CTL differentiation (7). In uninfected mice, compound deletion of the Tbx21 (encoding T-bet) and eomesodermin genes is associated with a selective loss of CD8+ T cells with an IL-2Rβ–high, memory phenotype (8). Mice deficient for both T-bet and Eomes in T cells ha"}

    bionlp-st-ge-2016-uniprot

    {"project":"bionlp-st-ge-2016-uniprot","denotations":[{"id":"T2006","span":{"begin":73,"end":78},"obj":"O95936"},{"id":"T2007","span":{"begin":84,"end":89},"obj":"Q9UL17"},{"id":"T2008","span":{"begin":232,"end":237},"obj":"Q9UL17"},{"id":"T2009","span":{"begin":301,"end":304},"obj":"P10966"},{"id":"T2010","span":{"begin":301,"end":304},"obj":"P01732"},{"id":"T2011","span":{"begin":381,"end":386},"obj":"Q9UL17"},{"id":"T2012","span":{"begin":391,"end":396},"obj":"O95936"}],"namespaces":[{"prefix":"_base","uri":"http://www.uniprot.org/uniprot/"}],"text":"TL differentiation (5, 6).\nThe T-box transcription factors Eomesodermin (Eomes) and T-bet are needed for important aspects of effector and memory CTL differentiation (7). In uninfected mice, compound deletion of the Tbx21 (encoding T-bet) and eomesodermin genes is associated with a selective loss of CD8+ T cells with an IL-2Rβ–high, memory phenotype (8). Mice deficient for both T-bet and Eomes in T cells ha"}

    test2

    {"project":"test2","denotations":[{"id":"T761","span":{"begin":391,"end":396},"obj":"Protein"},{"id":"T749","span":{"begin":59,"end":71},"obj":"Protein"},{"id":"T750","span":{"begin":73,"end":78},"obj":"Protein"},{"id":"T751","span":{"begin":84,"end":89},"obj":"Protein"},{"id":"T752","span":{"begin":200,"end":208},"obj":"Negative_regulation"},{"id":"T753","span":{"begin":212,"end":221},"obj":"Protein"},{"id":"T754","span":{"begin":232,"end":237},"obj":"Protein"},{"id":"T755","span":{"begin":239,"end":261},"obj":"Protein"},{"id":"T756","span":{"begin":265,"end":275},"obj":"Binding"},{"id":"T757","span":{"begin":301,"end":304},"obj":"Protein"},{"id":"T758","span":{"begin":322,"end":328},"obj":"Protein"},{"id":"T759","span":{"begin":362,"end":371},"obj":"Negative_regulation"},{"id":"T760","span":{"begin":381,"end":386},"obj":"Protein"}],"relations":[{"id":"R595","pred":"equivalentTo","subj":"T750","obj":"T749"},{"id":"R596","pred":"themeOf","subj":"T753","obj":"T752"},{"id":"R597","pred":"equivalentTo","subj":"T754","obj":"T753"},{"id":"R598","pred":"themeOf","subj":"T755","obj":"T756"},{"id":"R599","pred":"themeOf","subj":"T755","obj":"T752"},{"id":"R600","pred":"themeOf","subj":"T760","obj":"T759"},{"id":"R601","pred":"themeOf","subj":"T761","obj":"T759"}],"attributes":[{"id":"M7","pred":"Negation","subj":"T753","obj":"true"},{"id":"M6","pred":"Negation","subj":"T752","obj":"true"},{"id":"M5","pred":"Negation","subj":"T751","obj":"true"}],"text":"TL differentiation (5, 6).\nThe T-box transcription factors Eomesodermin (Eomes) and T-bet are needed for important aspects of effector and memory CTL differentiation (7). In uninfected mice, compound deletion of the Tbx21 (encoding T-bet) and eomesodermin genes is associated with a selective loss of CD8+ T cells with an IL-2Rβ–high, memory phenotype (8). Mice deficient for both T-bet and Eomes in T cells ha"}