> top > docs > PMC:2222968 > spans > 28-456 > annotations

PMC:2222968 / 28-456 JSONTXT

Annnotations TAB JSON ListView MergeView

pmc-enju-pas

Id Subject Object Predicate Lexical cue
T111 7-21 JJ denotes TGF-β1–Induced
T112 22-27 NN denotes FOXP3
T113 28-38 NN denotes Expression
T114 39-42 CC denotes and
T115 43-46 DT denotes the
T116 47-56 NN denotes Formation
T117 57-59 IN denotes of
T118 60-70 JJ denotes Regulatory
T119 71-72 NN denotes T
T120 73-78 NN denotes Cells
T121 131-144 NN denotes Transcription
T122 145-152 NN denotes factors
T123 153-156 VB denotes act
T124 157-159 IN denotes in
T125 160-167 NN denotes concert
T126 168-170 TO denotes to
T127 171-177 VB denotes induce
T128 178-185 NN denotes lineage
T129 186-196 NN denotes commitment
T130 197-204 IN denotes towards
T131 205-208 NN denotes Th1
T132 208-209 -COMMA- denotes ,
T133 210-213 NN denotes Th2
T134 213-214 -COMMA- denotes ,
T135 215-217 CC denotes or
T136 218-219 NN denotes T
T137 220-230 JJ denotes regulatory
T138 231-232 -LRB- denotes (
T139 232-236 NN denotes Treg
T140 236-237 -RRB- denotes )
T141 238-243 NN denotes cells
T142 243-244 -COMMA- denotes ,
T143 245-248 CC denotes and
T144 249-254 PRP-DOLLAR- denotes their
T145 255-273 JJ denotes counter-regulatory
T146 274-284 NN denotes mechanisms
T147 285-289 VB denotes were
T148 290-295 VB denotes shown
T149 296-298 TO denotes to
T150 299-301 VB denotes be
T151 302-310 JJ denotes critical
T152 311-314 IN denotes for
T153 315-327 NN denotes polarization
T154 328-335 IN denotes between
T155 336-339 NN denotes Th1
T156 340-343 CC denotes and
T157 344-347 NN denotes Th2
T158 348-358 NN denotes phenotypes
T159 360-365 NN denotes FOXP3
T160 366-368 VB denotes is
T161 369-371 DT denotes an
T162 372-381 JJ denotes essential
T163 382-395 NN denotes transcription
T164 396-402 NN denotes factor
T165 403-406 IN denotes for
T166 407-414 JJ denotes natural
T167 414-415 -COMMA- denotes ,
R47 T113 T111 arg1Of Expression,TGF-β1–Induced
R48 T113 T112 arg1Of Expression,FOXP3
R49 T113 T114 arg1Of Expression,and
R51 T116 T114 arg2Of Formation,and
R52 T116 T115 arg1Of Formation,the
R53 T116 T117 arg1Of Formation,of
R54 T120 T117 arg2Of Cells,of
R55 T120 T118 arg1Of Cells,Regulatory
R56 T120 T119 arg1Of Cells,T
R57 T122 T121 arg1Of factors,Transcription
R58 T122 T123 arg1Of factors,act
R59 T122 T127 arg1Of factors,induce
R60 T123 T124 arg1Of act,in
R61 T123 T126 modOf act,to
R62 T123 T143 arg1Of act,and
R63 T125 T124 arg2Of concert,in
R64 T127 T126 arg1Of induce,to
R65 T129 T127 arg2Of commitment,induce
R66 T129 T128 arg1Of commitment,lineage
R67 T129 T130 arg1Of commitment,towards
R68 T131 T132 arg1Of Th1,","
R69 T132 T135 arg1Of ",",or
R70 T133 T132 arg2Of Th2,","
R71 T135 T134 arg1Of or,","
R72 T136 T135 arg2Of T,or
R73 T139 T138 arg2Of Treg,(
R74 T140 T138 arg3Of ),(
R75 T141 T130 arg2Of cells,towards
R76 T141 T131 arg1Of cells,Th1
R77 T141 T133 arg1Of cells,Th2
R78 T141 T136 arg1Of cells,T
R79 T141 T137 arg1Of cells,regulatory
R80 T141 T138 arg1Of cells,(
R81 T143 T142 arg1Of and,","
R82 T146 T144 arg1Of mechanisms,their
R83 T146 T145 arg1Of mechanisms,counter-regulatory
R84 T146 T147 arg1Of mechanisms,were
R85 T146 T148 arg2Of mechanisms,shown
R86 T146 T150 arg1Of mechanisms,be
R87 T146 T151 arg1Of mechanisms,critical
R88 T148 T143 arg2Of shown,and
R89 T148 T147 arg2Of shown,were
R90 T150 T148 arg3Of be,shown
R91 T150 T149 arg1Of be,to
R92 T151 T150 arg2Of critical,be
R93 T151 T152 arg1Of critical,for
R94 T153 T152 arg2Of polarization,for
R95 T153 T154 arg1Of polarization,between
R96 T155 T156 arg1Of Th1,and
R97 T157 T156 arg2Of Th2,and
R98 T158 T154 arg2Of phenotypes,between
R99 T158 T155 arg1Of phenotypes,Th1
R100 T158 T157 arg1Of phenotypes,Th2
R101 T159 T160 arg1Of FOXP3,is
R103 T164 T160 arg2Of factor,is
R104 T164 T161 arg1Of factor,an
R105 T164 T162 arg1Of factor,essential
R106 T164 T163 arg1Of factor,transcription
R107 T164 T165 arg1Of factor,for
R108 T166 T167 arg1Of natural,","

bionlp-st-ge-2016-coref

Id Subject Object Predicate Lexical cue
T336 360-365 Antecedent denotes FOXP3

bionlp-st-ge-2016-spacy-parsed

Id Subject Object Predicate Lexical cue
T365 7-13 NN denotes TGF-β1
T366 14-21 NNP denotes Induced
T367 22-27 NNP denotes FOXP3
T368 28-38 NNP denotes Expression
T369 39-42 CC denotes and
T370 43-46 DT denotes the
T371 47-56 NN denotes Formation
T372 57-59 IN denotes of
T373 60-70 NNP denotes Regulatory
T374 71-72 NNP denotes T
T375 73-78 NNP denotes Cells
T376 131-144 NNP denotes Transcription
T377 145-152 NNS denotes factors
T378 153-156 VBP denotes act
T379 157-159 IN denotes in
T380 160-167 NN denotes concert
T381 168-170 TO denotes to
T382 171-177 VB denotes induce
T383 178-185 NN denotes lineage
T384 186-196 NN denotes commitment
T385 197-204 IN denotes towards
T386 205-208 NNP denotes Th1
T387 208-209 , denotes ,
T388 210-213 NNP denotes Th2
T389 213-214 , denotes ,
T390 215-217 CC denotes or
T391 218-219 NNP denotes T
T392 220-230 JJ denotes regulatory
T393 231-232 -LRB- denotes (
T394 232-236 NNP denotes Treg
T395 236-237 -RRB- denotes )
T396 238-243 NNS denotes cells
T397 243-244 , denotes ,
T398 245-248 CC denotes and
T399 249-254 PRP$ denotes their
T400 255-273 JJ denotes counter-regulatory
T401 274-284 NNS denotes mechanisms
T402 285-289 VBD denotes were
T403 290-295 VBN denotes shown
T404 296-298 TO denotes to
T405 299-301 VB denotes be
T406 302-310 JJ denotes critical
T407 311-314 IN denotes for
T408 315-327 NN denotes polarization
T409 328-335 IN denotes between
T410 336-339 CD denotes Th1
T411 340-343 CC denotes and
T412 344-347 CD denotes Th2
T413 348-358 NNS denotes phenotypes
T414 358-359 . denotes .
T415 360-365 CD denotes FOXP3
T416 366-368 VBZ denotes is
T417 369-371 DT denotes an
T418 372-381 JJ denotes essential
T419 382-395 NN denotes transcription
T420 396-402 NN denotes factor
T421 403-406 IN denotes for
T422 407-414 JJ denotes natural
T423 414-415 , denotes ,
R286 T366 T368 compound Induced,Expression
R287 T367 T368 compound FOXP3,Expression
R288 T368 T378 nsubj Expression,act
R289 T369 T368 cc and,Expression
R290 T370 T371 det the,Formation
R291 T371 T368 conj Formation,Expression
R292 T372 T371 prep of,Formation
R293 T373 T376 compound Regulatory,Transcription
R294 T374 T376 compound T,Transcription
R295 T375 T376 compound Cells,Transcription
R296 T376 T377 compound Transcription,factors
R297 T377 T372 pobj factors,of
R299 T379 T378 prep in,act
R300 T380 T379 pobj concert,in
R301 T381 T382 aux to,induce
R302 T382 T378 advcl induce,act
R303 T383 T384 compound lineage,commitment
R304 T384 T382 dobj commitment,induce
R305 T385 T384 prep towards,commitment
R306 T386 T385 pobj Th1,towards
R307 T387 T386 punct ",",Th1
R308 T388 T386 conj Th2,Th1
R309 T389 T388 punct ",",Th2
R310 T390 T388 cc or,Th2
R311 T391 T388 conj T,Th2
R312 T392 T396 amod regulatory,cells
R313 T393 T394 punct (,Treg
R314 T394 T392 appos Treg,regulatory
R315 T395 T394 punct ),Treg
R316 T396 T385 pobj cells,towards
R317 T397 T378 punct ",",act
R318 T398 T378 cc and,act
R319 T399 T401 poss their,mechanisms
R320 T400 T401 amod counter-regulatory,mechanisms
R321 T401 T403 nsubjpass mechanisms,shown
R322 T402 T403 auxpass were,shown
R323 T403 T378 conj shown,act
R324 T404 T405 aux to,be
R325 T405 T403 xcomp be,shown
R326 T406 T405 acomp critical,be
R327 T407 T406 prep for,critical
R328 T408 T407 pobj polarization,for
R329 T409 T408 prep between,polarization
R330 T410 T413 nummod Th1,phenotypes
R331 T411 T410 cc and,Th1
R332 T412 T410 conj Th2,Th1
R333 T413 T409 pobj phenotypes,between
R334 T414 T403 punct .,shown
R335 T415 T416 nsubj FOXP3,is
R337 T417 T420 det an,factor
R338 T418 T420 amod essential,factor
R339 T419 T420 compound transcription,factor
R340 T420 T416 attr factor,is
R341 T421 T420 prep for,factor
R343 T423 T422 punct ",",natural

UBERON-AE

Id Subject Object Predicate Lexical cue
T57 416-422 http://purl.obolibrary.org/obo/UBERON_0002370 denotes thymus

GO-BP

Id Subject Object Predicate Lexical cue
T67 47-56 http://purl.obolibrary.org/obo/GO_0009058 denotes Formation
T68 131-144 http://purl.obolibrary.org/obo/GO_0006351 denotes Transcription
T69 382-395 http://purl.obolibrary.org/obo/GO_0006351 denotes transcription

GO-CC

Id Subject Object Predicate Lexical cue
T635 238-243 http://purl.obolibrary.org/obo/GO_0005623 denotes cells

sentences

Id Subject Object Predicate Lexical cue
T59 131-359 Sentence denotes Transcription factors act in concert to induce lineage commitment towards Th1, Th2, or T regulatory (Treg) cells, and their counter-regulatory mechanisms were shown to be critical for polarization between Th1 and Th2 phenotypes.
T2 122-130 Sentence denotes Abstract
T3 131-359 Sentence denotes Transcription factors act in concert to induce lineage commitment towards Th1, Th2, or T regulatory (Treg) cells, and their counter-regulatory mechanisms were shown to be critical for polarization between Th1 and Th2 phenotypes.

events-check-again

Id Subject Object Predicate Lexical cue
T754 7-13 Protein denotes TGF-β1
T755 14-21 Positive_regulation denotes Induced
T756 22-27 Protein denotes FOXP3
T757 28-38 Gene_expression denotes Expression
T758 360-365 Protein denotes FOXP3
R653 T754 T755 causeOf TGF-β1,Induced
R655 T756 T757 themeOf FOXP3,Expression
R656 T757 T755 themeOf Expression,Induced

bionlp-st-ge-2016-reference-tees

Id Subject Object Predicate Lexical cue
T641 7-21 Protein denotes TGF-β1–Induced
T642 22-27 Protein denotes FOXP3
T643 28-38 Gene_expression denotes Expression
T644 28-38 Gene_expression denotes Expression
T647 336-339 Protein denotes Th1
T648 344-358 Protein denotes Th2 phenotypes
T649 360-365 Protein denotes FOXP3
R541 T641 T643 themeOf TGF-β1–Induced,Expression
R542 T642 T644 themeOf FOXP3,Expression

bionlp-st-ge-2016-reference

Id Subject Object Predicate Lexical cue
T83 14-21 Positive_regulation denotes Induced
T84 28-38 Gene_expression denotes Expression
T98 7-13 Protein denotes TGF-β1
T99 22-27 Protein denotes FOXP3
T101 360-365 Protein denotes FOXP3
R621 T84 T83 themeOf Expression,Induced
R629 T98 T83 causeOf TGF-β1,Induced
R630 T99 T84 themeOf FOXP3,Expression

bionlp-st-ge-2016-uniprot

Id Subject Object Predicate Lexical cue
T340 22-27 Q9BZS1 denotes FOXP3
T341 360-365 Q9BZS1 denotes FOXP3

test2

Id Subject Object Predicate Lexical cue Speculation
T33 7-13 Protein denotes TGF-β1
T34 14-21 Positive_regulation denotes Induced true
T35 22-27 Protein denotes FOXP3
T36 28-38 Gene_expression denotes Expression
T37 360-365 Protein denotes FOXP3
R23 T33 T34 causeOf TGF-β1,Induced
R25 T35 T36 themeOf FOXP3,Expression
R26 T36 T34 themeOf Expression,Induced