PMC:2222968 / 24191-24406 JSONTXT

Annnotations TAB JSON ListView MergeView

    pmc-enju-pas

    {"project":"pmc-enju-pas","denotations":[{"id":"T11728","span":{"begin":0,"end":3},"obj":"DT"},{"id":"T11729","span":{"begin":4,"end":12},"obj":"NN"},{"id":"T11730","span":{"begin":13,"end":16},"obj":"VB"},{"id":"T11731","span":{"begin":17,"end":20},"obj":"RB"},{"id":"T11732","span":{"begin":21,"end":27},"obj":"JJ"},{"id":"T11733","span":{"begin":28,"end":30},"obj":"IN"},{"id":"T11734","span":{"begin":31,"end":34},"obj":"DT"},{"id":"T11735","span":{"begin":35,"end":51},"obj":"JJ"},{"id":"T11736","span":{"begin":52,"end":56},"obj":"NN"},{"id":"T11737","span":{"begin":57,"end":61},"obj":"NN"},{"id":"T11738","span":{"begin":62,"end":68},"obj":"NN"},{"id":"T11739","span":{"begin":69,"end":71},"obj":"CC"},{"id":"T11740","span":{"begin":72,"end":74},"obj":"IN"},{"id":"T11741","span":{"begin":75,"end":78},"obj":"DT"},{"id":"T11742","span":{"begin":79,"end":81},"obj":"IN"},{"id":"T11743","span":{"begin":82,"end":102},"obj":"JJ"},{"id":"T11744","span":{"begin":103,"end":106},"obj":"NN"},{"id":"T11745","span":{"begin":107,"end":112},"obj":"NN"},{"id":"T11746","span":{"begin":112,"end":113},"obj":"-COMMA-"},{"id":"T11747","span":{"begin":114,"end":121},"obj":"IN"},{"id":"T11748","span":{"begin":122,"end":125},"obj":"DT"},{"id":"T11749","span":{"begin":126,"end":135},"obj":"NN"},{"id":"T11750","span":{"begin":136,"end":139},"obj":"VB"},{"id":"T11751","span":{"begin":140,"end":146},"obj":"JJ"},{"id":"T11752","span":{"begin":147,"end":149},"obj":"IN"},{"id":"T11753","span":{"begin":150,"end":153},"obj":"DT"},{"id":"T11754","span":{"begin":154,"end":157},"obj":"NN"},{"id":"T11755","span":{"begin":158,"end":163},"obj":"NN"},{"id":"T11756","span":{"begin":163,"end":164},"obj":"-COMMA-"},{"id":"T11757","span":{"begin":165,"end":170},"obj":"WDT"},{"id":"T11758","span":{"begin":171,"end":178},"obj":"VB"},{"id":"T11759","span":{"begin":179,"end":180},"obj":"DT"},{"id":"T11760","span":{"begin":181,"end":186},"obj":"JJ"},{"id":"T11761","span":{"begin":187,"end":193},"obj":"NN"},{"id":"T11762","span":{"begin":194,"end":196},"obj":"IN"},{"id":"T11763","span":{"begin":197,"end":202},"obj":"NN"},{"id":"T11764","span":{"begin":203,"end":204},"obj":"-LRB-"},{"id":"T11765","span":{"begin":204,"end":210},"obj":"NN"},{"id":"T11766","span":{"begin":211,"end":213},"obj":"NN"},{"id":"T11767","span":{"begin":213,"end":214},"obj":"-RRB-"}],"relations":[{"id":"R8752","pred":"arg1Of","subj":"T11729","obj":"T11728"},{"id":"R8753","pred":"arg1Of","subj":"T11729","obj":"T11730"},{"id":"R8754","pred":"arg1Of","subj":"T11729","obj":"T11732"},{"id":"R8755","pred":"arg1Of","subj":"T11730","obj":"T11731"},{"id":"R8756","pred":"arg1Of","subj":"T11730","obj":"T11733"},{"id":"R8757","pred":"arg1Of","subj":"T11730","obj":"T11740"},{"id":"R8758","pred":"arg1Of","subj":"T11730","obj":"T11747"},{"id":"R8759","pred":"arg2Of","subj":"T11732","obj":"T11730"},{"id":"R8760","pred":"arg1Of","subj":"T11733","obj":"T11739"},{"id":"R8761","pred":"arg2Of","subj":"T11738","obj":"T11733"},{"id":"R8762","pred":"arg1Of","subj":"T11738","obj":"T11734"},{"id":"R8763","pred":"arg1Of","subj":"T11738","obj":"T11735"},{"id":"R8764","pred":"arg1Of","subj":"T11738","obj":"T11736"},{"id":"R8765","pred":"arg1Of","subj":"T11738","obj":"T11737"},{"id":"R8766","pred":"arg2Of","subj":"T11740","obj":"T11739"},{"id":"R8767","pred":"arg1Of","subj":"T11742","obj":"T11741"},{"id":"R8768","pred":"arg2Of","subj":"T11745","obj":"T11740"},{"id":"R8769","pred":"arg1Of","subj":"T11745","obj":"T11742"},{"id":"R8770","pred":"arg1Of","subj":"T11745","obj":"T11743"},{"id":"R8771","pred":"arg1Of","subj":"T11745","obj":"T11744"},{"id":"R8772","pred":"arg1Of","subj":"T11747","obj":"T11746"},{"id":"R8773","pred":"arg1Of","subj":"T11749","obj":"T11748"},{"id":"R8774","pred":"arg1Of","subj":"T11749","obj":"T11750"},{"id":"R8775","pred":"arg1Of","subj":"T11749","obj":"T11751"},{"id":"R8776","pred":"arg2Of","subj":"T11750","obj":"T11747"},{"id":"R8777","pred":"arg2Of","subj":"T11751","obj":"T11750"},{"id":"R8778","pred":"arg1Of","subj":"T11751","obj":"T11752"},{"id":"R8779","pred":"arg2Of","subj":"T11755","obj":"T11752"},{"id":"R8780","pred":"arg1Of","subj":"T11755","obj":"T11753"},{"id":"R8781","pred":"arg1Of","subj":"T11755","obj":"T11754"},{"id":"R8782","pred":"arg1Of","subj":"T11755","obj":"T11756"},{"id":"R8783","pred":"arg1Of","subj":"T11755","obj":"T11757"},{"id":"R8784","pred":"arg1Of","subj":"T11755","obj":"T11758"},{"id":"R8785","pred":"arg2Of","subj":"T11761","obj":"T11758"},{"id":"R8786","pred":"arg1Of","subj":"T11761","obj":"T11759"},{"id":"R8787","pred":"arg1Of","subj":"T11761","obj":"T11760"},{"id":"R8788","pred":"arg1Of","subj":"T11761","obj":"T11762"},{"id":"R8789","pred":"arg2Of","subj":"T11763","obj":"T11762"},{"id":"R8790","pred":"arg1Of","subj":"T11763","obj":"T11764"},{"id":"R8791","pred":"arg2Of","subj":"T11766","obj":"T11764"},{"id":"R8792","pred":"arg1Of","subj":"T11766","obj":"T11765"},{"id":"R8793","pred":"arg3Of","subj":"T11767","obj":"T11764"}],"namespaces":[{"prefix":"_base","uri":"http://kmcs.nii.ac.jp/enju/"}],"text":"The promoter was not active in the GATA3-expressing cell line Jurkat or in the in vitro-differentiated Th2 cells, whereas the construct was active in the CD4 cells, which express a lower amount of GATA3 (Figure 8A)."}

    bionlp-st-ge-2016-coref

    {"project":"bionlp-st-ge-2016-coref","denotations":[{"id":"T12015","span":{"begin":122,"end":135},"obj":"Anaphor"}],"namespaces":[{"prefix":"_base","uri":"https://bionlp.dbcls.jp/ontology/ge.owl#"}],"text":"The promoter was not active in the GATA3-expressing cell line Jurkat or in the in vitro-differentiated Th2 cells, whereas the construct was active in the CD4 cells, which express a lower amount of GATA3 (Figure 8A)."}

    bionlp-st-ge-2016-spacy-parsed

    {"project":"bionlp-st-ge-2016-spacy-parsed","denotations":[{"id":"T12215","span":{"begin":0,"end":3},"obj":"DT"},{"id":"T12216","span":{"begin":4,"end":12},"obj":"NN"},{"id":"T12217","span":{"begin":13,"end":16},"obj":"VBD"},{"id":"T12218","span":{"begin":17,"end":20},"obj":"RB"},{"id":"T12219","span":{"begin":21,"end":27},"obj":"JJ"},{"id":"T12220","span":{"begin":28,"end":30},"obj":"IN"},{"id":"T12221","span":{"begin":31,"end":34},"obj":"DT"},{"id":"T12222","span":{"begin":35,"end":51},"obj":"JJ"},{"id":"T12223","span":{"begin":52,"end":56},"obj":"NN"},{"id":"T12224","span":{"begin":57,"end":61},"obj":"NN"},{"id":"T12225","span":{"begin":62,"end":68},"obj":"NNP"},{"id":"T12226","span":{"begin":69,"end":71},"obj":"CC"},{"id":"T12227","span":{"begin":72,"end":74},"obj":"IN"},{"id":"T12228","span":{"begin":75,"end":78},"obj":"DT"},{"id":"T12229","span":{"begin":79,"end":81},"obj":"IN"},{"id":"T12230","span":{"begin":82,"end":102},"obj":"JJ"},{"id":"T12231","span":{"begin":103,"end":106},"obj":"JJ"},{"id":"T12232","span":{"begin":107,"end":112},"obj":"NNS"},{"id":"T12233","span":{"begin":112,"end":113},"obj":","},{"id":"T12234","span":{"begin":114,"end":121},"obj":"IN"},{"id":"T12235","span":{"begin":122,"end":125},"obj":"DT"},{"id":"T12236","span":{"begin":126,"end":135},"obj":"VBP"},{"id":"T12237","span":{"begin":136,"end":139},"obj":"VBD"},{"id":"T12238","span":{"begin":140,"end":146},"obj":"JJ"},{"id":"T12239","span":{"begin":147,"end":149},"obj":"IN"},{"id":"T12240","span":{"begin":150,"end":153},"obj":"DT"},{"id":"T12241","span":{"begin":154,"end":157},"obj":"NNP"},{"id":"T12242","span":{"begin":158,"end":163},"obj":"NNS"},{"id":"T12243","span":{"begin":163,"end":164},"obj":","},{"id":"T12244","span":{"begin":165,"end":170},"obj":"WDT"},{"id":"T12245","span":{"begin":171,"end":178},"obj":"VBP"},{"id":"T12246","span":{"begin":179,"end":180},"obj":"DT"},{"id":"T12247","span":{"begin":181,"end":186},"obj":"JJR"},{"id":"T12248","span":{"begin":187,"end":193},"obj":"NN"},{"id":"T12249","span":{"begin":194,"end":196},"obj":"IN"},{"id":"T12250","span":{"begin":197,"end":202},"obj":"NNP"},{"id":"T12251","span":{"begin":203,"end":204},"obj":"-LRB-"},{"id":"T12252","span":{"begin":204,"end":210},"obj":"NNP"},{"id":"T12253","span":{"begin":211,"end":213},"obj":"NNP"},{"id":"T12254","span":{"begin":213,"end":214},"obj":"-RRB-"},{"id":"T12255","span":{"begin":214,"end":215},"obj":"."}],"relations":[{"id":"R9177","pred":"det","subj":"T12215","obj":"T12216"},{"id":"R9178","pred":"nsubj","subj":"T12216","obj":"T12217"},{"id":"R9179","pred":"ROOT","subj":"T12217","obj":"T12217"},{"id":"R9180","pred":"neg","subj":"T12218","obj":"T12217"},{"id":"R9181","pred":"acomp","subj":"T12219","obj":"T12217"},{"id":"R9182","pred":"prep","subj":"T12220","obj":"T12219"},{"id":"R9183","pred":"det","subj":"T12221","obj":"T12224"},{"id":"R9184","pred":"compound","subj":"T12222","obj":"T12223"},{"id":"R9185","pred":"compound","subj":"T12223","obj":"T12224"},{"id":"R9186","pred":"pobj","subj":"T12224","obj":"T12220"},{"id":"R9187","pred":"appos","subj":"T12225","obj":"T12224"},{"id":"R9188","pred":"cc","subj":"T12226","obj":"T12220"},{"id":"R9189","pred":"conj","subj":"T12227","obj":"T12220"},{"id":"R9190","pred":"det","subj":"T12228","obj":"T12229"},{"id":"R9191","pred":"pobj","subj":"T12229","obj":"T12227"},{"id":"R9192","pred":"amod","subj":"T12230","obj":"T12232"},{"id":"R9193","pred":"amod","subj":"T12231","obj":"T12232"},{"id":"R9194","pred":"pobj","subj":"T12232","obj":"T12229"},{"id":"R9195","pred":"punct","subj":"T12233","obj":"T12217"},{"id":"R9196","pred":"mark","subj":"T12234","obj":"T12237"},{"id":"R9197","pred":"det","subj":"T12235","obj":"T12236"},{"id":"R9198","pred":"nsubj","subj":"T12236","obj":"T12237"},{"id":"R9199","pred":"advcl","subj":"T12237","obj":"T12217"},{"id":"R9200","pred":"acomp","subj":"T12238","obj":"T12237"},{"id":"R9201","pred":"prep","subj":"T12239","obj":"T12238"},{"id":"R9202","pred":"det","subj":"T12240","obj":"T12242"},{"id":"R9203","pred":"compound","subj":"T12241","obj":"T12242"},{"id":"R9204","pred":"pobj","subj":"T12242","obj":"T12239"},{"id":"R9205","pred":"punct","subj":"T12243","obj":"T12237"},{"id":"R9206","pred":"nsubj","subj":"T12244","obj":"T12245"},{"id":"R9207","pred":"conj","subj":"T12245","obj":"T12217"},{"id":"R9208","pred":"det","subj":"T12246","obj":"T12248"},{"id":"R9209","pred":"amod","subj":"T12247","obj":"T12248"},{"id":"R9210","pred":"dobj","subj":"T12248","obj":"T12245"},{"id":"R9211","pred":"prep","subj":"T12249","obj":"T12248"},{"id":"R9212","pred":"pobj","subj":"T12250","obj":"T12249"},{"id":"R9213","pred":"punct","subj":"T12251","obj":"T12253"},{"id":"R9214","pred":"compound","subj":"T12252","obj":"T12253"},{"id":"R9215","pred":"appos","subj":"T12253","obj":"T12250"},{"id":"R9216","pred":"punct","subj":"T12254","obj":"T12253"},{"id":"R9217","pred":"punct","subj":"T12255","obj":"T12217"}],"text":"The promoter was not active in the GATA3-expressing cell line Jurkat or in the in vitro-differentiated Th2 cells, whereas the construct was active in the CD4 cells, which express a lower amount of GATA3 (Figure 8A)."}

    GO-CC

    {"project":"GO-CC","denotations":[{"id":"T12608","span":{"begin":107,"end":112},"obj":"http://purl.obolibrary.org/obo/GO_0005623"},{"id":"T12609","span":{"begin":158,"end":163},"obj":"http://purl.obolibrary.org/obo/GO_0005623"}],"text":"The promoter was not active in the GATA3-expressing cell line Jurkat or in the in vitro-differentiated Th2 cells, whereas the construct was active in the CD4 cells, which express a lower amount of GATA3 (Figure 8A)."}

    sentences

    {"project":"sentences","denotations":[{"id":"T11574","span":{"begin":0,"end":215},"obj":"Sentence"},{"id":"T182","span":{"begin":0,"end":215},"obj":"Sentence"}],"namespaces":[{"prefix":"_base","uri":"http://pubannotation.org/ontology/tao.owl#"}],"text":"The promoter was not active in the GATA3-expressing cell line Jurkat or in the in vitro-differentiated Th2 cells, whereas the construct was active in the CD4 cells, which express a lower amount of GATA3 (Figure 8A)."}

    events-check-again

    {"project":"events-check-again","denotations":[{"id":"T12906","span":{"begin":35,"end":40},"obj":"Protein"},{"id":"T12907","span":{"begin":41,"end":51},"obj":"Gene_expression"},{"id":"T12908","span":{"begin":140,"end":146},"obj":"Positive_regulation"},{"id":"T12909","span":{"begin":154,"end":157},"obj":"Protein"},{"id":"T12910","span":{"begin":171,"end":178},"obj":"Gene_expression"},{"id":"T12911","span":{"begin":197,"end":202},"obj":"Protein"}],"relations":[{"id":"R9668","pred":"themeOf","subj":"T12906","obj":"T12907"},{"id":"R9669","pred":"causeOf","subj":"T12910","obj":"T12908"},{"id":"R9670","pred":"themeOf","subj":"T12911","obj":"T12910"}],"attributes":[{"id":"M328","pred":"Negation","subj":"T12910","obj":"true"}],"text":"The promoter was not active in the GATA3-expressing cell line Jurkat or in the in vitro-differentiated Th2 cells, whereas the construct was active in the CD4 cells, which express a lower amount of GATA3 (Figure 8A)."}

    bionlp-st-ge-2016-reference-tees

    {"project":"bionlp-st-ge-2016-reference-tees","denotations":[{"id":"T12637","span":{"begin":35,"end":40},"obj":"Protein"},{"id":"T12638","span":{"begin":154,"end":157},"obj":"Protein"},{"id":"T12639","span":{"begin":197,"end":202},"obj":"Protein"},{"id":"T12640","span":{"begin":41,"end":51},"obj":"Gene_expression"},{"id":"T12641","span":{"begin":171,"end":178},"obj":"Gene_expression"}],"relations":[{"id":"R9525","pred":"themeOf","subj":"T12637","obj":"T12640"},{"id":"R9526","pred":"themeOf","subj":"T12639","obj":"T12641"}],"text":"The promoter was not active in the GATA3-expressing cell line Jurkat or in the in vitro-differentiated Th2 cells, whereas the construct was active in the CD4 cells, which express a lower amount of GATA3 (Figure 8A)."}

    bionlp-st-ge-2016-reference

    {"project":"bionlp-st-ge-2016-reference","denotations":[{"id":"T11519","span":{"begin":35,"end":40},"obj":"Protein"},{"id":"T11520","span":{"begin":41,"end":51},"obj":"Gene_expression"},{"id":"T11521","span":{"begin":140,"end":146},"obj":"Positive_regulation"},{"id":"T11522","span":{"begin":154,"end":157},"obj":"Protein"},{"id":"T11523","span":{"begin":171,"end":178},"obj":"Gene_expression"},{"id":"T11524","span":{"begin":197,"end":202},"obj":"Protein"}],"relations":[{"id":"R8593","pred":"themeOf","subj":"T11519","obj":"T11520"},{"id":"R8594","pred":"causeOf","subj":"T11523","obj":"T11521"},{"id":"R8595","pred":"themeOf","subj":"T11524","obj":"T11523"}],"attributes":[{"id":"M315","pred":"Negation","subj":"T11523","obj":"true"}],"namespaces":[{"prefix":"_base","uri":"http://bionlp.dbcls.jp/ontology/ge.owl#"}],"text":"The promoter was not active in the GATA3-expressing cell line Jurkat or in the in vitro-differentiated Th2 cells, whereas the construct was active in the CD4 cells, which express a lower amount of GATA3 (Figure 8A)."}

    bionlp-st-ge-2016-uniprot

    {"project":"bionlp-st-ge-2016-uniprot","denotations":[{"id":"T12028","span":{"begin":35,"end":40},"obj":"P23771"},{"id":"T12029","span":{"begin":154,"end":157},"obj":"P01730"},{"id":"T12030","span":{"begin":197,"end":202},"obj":"P23771"}],"namespaces":[{"prefix":"_base","uri":"http://www.uniprot.org/uniprot/"}],"text":"The promoter was not active in the GATA3-expressing cell line Jurkat or in the in vitro-differentiated Th2 cells, whereas the construct was active in the CD4 cells, which express a lower amount of GATA3 (Figure 8A)."}

    test2

    {"project":"test2","denotations":[{"id":"T11448","span":{"begin":35,"end":40},"obj":"Protein"},{"id":"T11449","span":{"begin":41,"end":51},"obj":"Gene_expression"},{"id":"T11450","span":{"begin":154,"end":157},"obj":"Protein"},{"id":"T11451","span":{"begin":171,"end":178},"obj":"Gene_expression"},{"id":"T11452","span":{"begin":197,"end":202},"obj":"Protein"}],"relations":[{"id":"R8556","pred":"themeOf","subj":"T11448","obj":"T11449"},{"id":"R8557","pred":"themeOf","subj":"T11452","obj":"T11451"}],"text":"The promoter was not active in the GATA3-expressing cell line Jurkat or in the in vitro-differentiated Th2 cells, whereas the construct was active in the CD4 cells, which express a lower amount of GATA3 (Figure 8A)."}