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PMC:2222968 / 24191-24406 JSONTXT

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pmc-enju-pas

Id Subject Object Predicate Lexical cue
T11728 0-3 DT denotes The
T11729 4-12 NN denotes promoter
T11730 13-16 VB denotes was
T11731 17-20 RB denotes not
T11732 21-27 JJ denotes active
T11733 28-30 IN denotes in
T11734 31-34 DT denotes the
T11735 35-51 JJ denotes GATA3-expressing
T11736 52-56 NN denotes cell
T11737 57-61 NN denotes line
T11738 62-68 NN denotes Jurkat
T11739 69-71 CC denotes or
T11740 72-74 IN denotes in
T11741 75-78 DT denotes the
T11742 79-81 IN denotes in
T11743 82-102 JJ denotes vitro-differentiated
T11744 103-106 NN denotes Th2
T11745 107-112 NN denotes cells
T11746 112-113 -COMMA- denotes ,
T11747 114-121 IN denotes whereas
T11748 122-125 DT denotes the
T11749 126-135 NN denotes construct
T11750 136-139 VB denotes was
T11751 140-146 JJ denotes active
T11752 147-149 IN denotes in
T11753 150-153 DT denotes the
T11754 154-157 NN denotes CD4
T11755 158-163 NN denotes cells
T11756 163-164 -COMMA- denotes ,
T11757 165-170 WDT denotes which
T11758 171-178 VB denotes express
T11759 179-180 DT denotes a
T11760 181-186 JJ denotes lower
T11761 187-193 NN denotes amount
T11762 194-196 IN denotes of
T11763 197-202 NN denotes GATA3
T11764 203-204 -LRB- denotes (
T11765 204-210 NN denotes Figure
T11766 211-213 NN denotes 8A
T11767 213-214 -RRB- denotes )
R8752 T11729 T11728 arg1Of promoter,The
R8753 T11729 T11730 arg1Of promoter,was
R8754 T11729 T11732 arg1Of promoter,active
R8755 T11730 T11731 arg1Of was,not
R8756 T11730 T11733 arg1Of was,in
R8757 T11730 T11740 arg1Of was,in
R8758 T11730 T11747 arg1Of was,whereas
R8759 T11732 T11730 arg2Of active,was
R8760 T11733 T11739 arg1Of in,or
R8761 T11738 T11733 arg2Of Jurkat,in
R8762 T11738 T11734 arg1Of Jurkat,the
R8763 T11738 T11735 arg1Of Jurkat,GATA3-expressing
R8764 T11738 T11736 arg1Of Jurkat,cell
R8765 T11738 T11737 arg1Of Jurkat,line
R8766 T11740 T11739 arg2Of in,or
R8767 T11742 T11741 arg1Of in,the
R8768 T11745 T11740 arg2Of cells,in
R8769 T11745 T11742 arg1Of cells,in
R8770 T11745 T11743 arg1Of cells,vitro-differentiated
R8771 T11745 T11744 arg1Of cells,Th2
R8772 T11747 T11746 arg1Of whereas,","
R8773 T11749 T11748 arg1Of construct,the
R8774 T11749 T11750 arg1Of construct,was
R8775 T11749 T11751 arg1Of construct,active
R8776 T11750 T11747 arg2Of was,whereas
R8777 T11751 T11750 arg2Of active,was
R8778 T11751 T11752 arg1Of active,in
R8779 T11755 T11752 arg2Of cells,in
R8780 T11755 T11753 arg1Of cells,the
R8781 T11755 T11754 arg1Of cells,CD4
R8782 T11755 T11756 arg1Of cells,","
R8783 T11755 T11757 arg1Of cells,which
R8784 T11755 T11758 arg1Of cells,express
R8785 T11761 T11758 arg2Of amount,express
R8786 T11761 T11759 arg1Of amount,a
R8787 T11761 T11760 arg1Of amount,lower
R8788 T11761 T11762 arg1Of amount,of
R8789 T11763 T11762 arg2Of GATA3,of
R8790 T11763 T11764 arg1Of GATA3,(
R8791 T11766 T11764 arg2Of 8A,(
R8792 T11766 T11765 arg1Of 8A,Figure
R8793 T11767 T11764 arg3Of ),(

bionlp-st-ge-2016-coref

Id Subject Object Predicate Lexical cue
T12015 122-135 Anaphor denotes the construct

bionlp-st-ge-2016-spacy-parsed

Id Subject Object Predicate Lexical cue
T12215 0-3 DT denotes The
T12216 4-12 NN denotes promoter
T12217 13-16 VBD denotes was
T12218 17-20 RB denotes not
T12219 21-27 JJ denotes active
T12220 28-30 IN denotes in
T12221 31-34 DT denotes the
T12222 35-51 JJ denotes GATA3-expressing
T12223 52-56 NN denotes cell
T12224 57-61 NN denotes line
T12225 62-68 NNP denotes Jurkat
T12226 69-71 CC denotes or
T12227 72-74 IN denotes in
T12228 75-78 DT denotes the
T12229 79-81 IN denotes in
T12230 82-102 JJ denotes vitro-differentiated
T12231 103-106 JJ denotes Th2
T12232 107-112 NNS denotes cells
T12233 112-113 , denotes ,
T12234 114-121 IN denotes whereas
T12235 122-125 DT denotes the
T12236 126-135 VBP denotes construct
T12237 136-139 VBD denotes was
T12238 140-146 JJ denotes active
T12239 147-149 IN denotes in
T12240 150-153 DT denotes the
T12241 154-157 NNP denotes CD4
T12242 158-163 NNS denotes cells
T12243 163-164 , denotes ,
T12244 165-170 WDT denotes which
T12245 171-178 VBP denotes express
T12246 179-180 DT denotes a
T12247 181-186 JJR denotes lower
T12248 187-193 NN denotes amount
T12249 194-196 IN denotes of
T12250 197-202 NNP denotes GATA3
T12251 203-204 -LRB- denotes (
T12252 204-210 NNP denotes Figure
T12253 211-213 NNP denotes 8A
T12254 213-214 -RRB- denotes )
T12255 214-215 . denotes .
R9177 T12215 T12216 det The,promoter
R9178 T12216 T12217 nsubj promoter,was
R9179 T12217 T12217 ROOT was,was
R9180 T12218 T12217 neg not,was
R9181 T12219 T12217 acomp active,was
R9182 T12220 T12219 prep in,active
R9183 T12221 T12224 det the,line
R9184 T12222 T12223 compound GATA3-expressing,cell
R9185 T12223 T12224 compound cell,line
R9186 T12224 T12220 pobj line,in
R9187 T12225 T12224 appos Jurkat,line
R9188 T12226 T12220 cc or,in
R9189 T12227 T12220 conj in,in
R9190 T12228 T12229 det the,in
R9191 T12229 T12227 pobj in,in
R9192 T12230 T12232 amod vitro-differentiated,cells
R9193 T12231 T12232 amod Th2,cells
R9194 T12232 T12229 pobj cells,in
R9195 T12233 T12217 punct ",",was
R9196 T12234 T12237 mark whereas,was
R9197 T12235 T12236 det the,construct
R9198 T12236 T12237 nsubj construct,was
R9199 T12237 T12217 advcl was,was
R9200 T12238 T12237 acomp active,was
R9201 T12239 T12238 prep in,active
R9202 T12240 T12242 det the,cells
R9203 T12241 T12242 compound CD4,cells
R9204 T12242 T12239 pobj cells,in
R9205 T12243 T12237 punct ",",was
R9206 T12244 T12245 nsubj which,express
R9207 T12245 T12217 conj express,was
R9208 T12246 T12248 det a,amount
R9209 T12247 T12248 amod lower,amount
R9210 T12248 T12245 dobj amount,express
R9211 T12249 T12248 prep of,amount
R9212 T12250 T12249 pobj GATA3,of
R9213 T12251 T12253 punct (,8A
R9214 T12252 T12253 compound Figure,8A
R9215 T12253 T12250 appos 8A,GATA3
R9216 T12254 T12253 punct ),8A
R9217 T12255 T12217 punct .,was

GO-CC

Id Subject Object Predicate Lexical cue
T12608 107-112 http://purl.obolibrary.org/obo/GO_0005623 denotes cells
T12609 158-163 http://purl.obolibrary.org/obo/GO_0005623 denotes cells

sentences

Id Subject Object Predicate Lexical cue
T11574 0-215 Sentence denotes The promoter was not active in the GATA3-expressing cell line Jurkat or in the in vitro-differentiated Th2 cells, whereas the construct was active in the CD4 cells, which express a lower amount of GATA3 (Figure 8A).
T182 0-215 Sentence denotes The promoter was not active in the GATA3-expressing cell line Jurkat or in the in vitro-differentiated Th2 cells, whereas the construct was active in the CD4 cells, which express a lower amount of GATA3 (Figure 8A).

events-check-again

Id Subject Object Predicate Lexical cue Negation
T12906 35-40 Protein denotes GATA3
T12907 41-51 Gene_expression denotes expressing
T12908 140-146 Positive_regulation denotes active
T12909 154-157 Protein denotes CD4
T12910 171-178 Gene_expression denotes express true
T12911 197-202 Protein denotes GATA3
R9668 T12906 T12907 themeOf GATA3,expressing
R9669 T12910 T12908 causeOf express,active
R9670 T12911 T12910 themeOf GATA3,express

bionlp-st-ge-2016-reference-tees

Id Subject Object Predicate Lexical cue
T12637 35-40 Protein denotes GATA3
T12638 154-157 Protein denotes CD4
T12639 197-202 Protein denotes GATA3
T12640 41-51 Gene_expression denotes expressing
T12641 171-178 Gene_expression denotes express
R9525 T12637 T12640 themeOf GATA3,expressing
R9526 T12639 T12641 themeOf GATA3,express

bionlp-st-ge-2016-reference

Id Subject Object Predicate Lexical cue Negation
T11519 35-40 Protein denotes GATA3
T11520 41-51 Gene_expression denotes expressing
T11521 140-146 Positive_regulation denotes active
T11522 154-157 Protein denotes CD4
T11523 171-178 Gene_expression denotes express true
T11524 197-202 Protein denotes GATA3
R8593 T11519 T11520 themeOf GATA3,expressing
R8594 T11523 T11521 causeOf express,active
R8595 T11524 T11523 themeOf GATA3,express

bionlp-st-ge-2016-uniprot

Id Subject Object Predicate Lexical cue
T12028 35-40 P23771 denotes GATA3
T12029 154-157 P01730 denotes CD4
T12030 197-202 P23771 denotes GATA3

test2

Id Subject Object Predicate Lexical cue
T11448 35-40 Protein denotes GATA3
T11449 41-51 Gene_expression denotes expressing
T11450 154-157 Protein denotes CD4
T11451 171-178 Gene_expression denotes express
T11452 197-202 Protein denotes GATA3
R8556 T11448 T11449 themeOf GATA3,expressing
R8557 T11452 T11451 themeOf GATA3,express