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PMC:2222968 / 19625-20016 JSONTXT

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pmc-enju-pas

Id Subject Object Predicate Lexical cue
T8599 0-3 DT denotes The
T8600 4-14 NN denotes expression
T8601 15-22 JJ denotes kinetic
T8602 23-25 IN denotes of
T8603 26-31 JJ denotes naive
T8604 32-33 NN denotes T
T8605 34-39 NN denotes cells
T8606 40-47 VB denotes exposed
T8607 48-50 TO denotes to
T8608 51-55 NN denotes IL-4
T8609 56-59 CC denotes and
T8610 60-65 NN denotes TGF-β
T8611 66-78 VB denotes demonstrated
T8612 79-83 IN denotes that
T8613 84-89 NN denotes GATA3
T8614 90-93 CC denotes and
T8615 94-99 NN denotes FOXP3
T8616 100-103 VB denotes are
T8617 104-113 RB denotes initially
T8618 114-119 VB denotes found
T8619 120-122 IN denotes in
T8620 123-131 JJ denotes separate
T8621 132-143 NN denotes populations
T8622 144-145 -LRB- denotes (
T8623 145-148 NN denotes day
T8624 149-150 CD denotes 2
T8625 150-151 -RRB- denotes )
T8626 151-152 -COMMA- denotes ,
T8627 153-156 CC denotes but
T8628 157-168 RB denotes transiently
T8629 169-179 VB denotes co-express
T8630 180-184 DT denotes both
T8631 185-192 NN denotes factors
T8632 193-194 -LRB- denotes (
T8633 194-198 NN denotes days
T8634 199-202 CD denotes 4–8
T8635 202-203 -RRB- denotes )
T8636 203-204 -COMMA- denotes ,
T8637 205-211 IN denotes before
T8638 212-224 VB denotes establishing
T8639 225-233 JJ denotes separate
T8640 234-245 NN denotes populations
T8641 246-248 IN denotes at
T8642 249-252 DT denotes the
T8643 253-256 NN denotes end
T8644 257-259 IN denotes of
T8645 260-263 DT denotes the
T8646 264-279 NN denotes differentiation
T8647 280-287 NN denotes process
T8648 288-289 -LRB- denotes (
T8649 289-292 NN denotes day
T8650 293-295 CD denotes 10
T8651 295-296 -COLON- denotes ;
T8652 297-303 NN denotes Figure
T8653 304-306 NN denotes 6C
T8654 306-307 -RRB- denotes )
T8655 307-308 -COMMA- denotes ,
T8656 309-319 VB denotes suggesting
T8657 320-324 IN denotes that
T8658 325-330 NN denotes GATA3
T8659 331-339 VB denotes inhibits
T8660 340-343 DT denotes the
T8661 344-355 NN denotes development
T8662 356-358 IN denotes of
T8663 359-364 NN denotes iTreg
T8664 365-370 NN denotes cells
T8665 371-373 IN denotes by
T8666 374-384 VB denotes repressing
T8667 385-390 NN denotes FOXP3
R6573 T8600 T8599 arg1Of expression,The
R6574 T8600 T8601 arg1Of expression,kinetic
R6575 T8600 T8611 arg1Of expression,demonstrated
R6576 T8601 T8602 arg1Of kinetic,of
R6577 T8605 T8602 arg2Of cells,of
R6578 T8605 T8603 arg1Of cells,naive
R6579 T8605 T8604 arg1Of cells,T
R6580 T8605 T8606 arg2Of cells,exposed
R6581 T8606 T8607 arg1Of exposed,to
R6582 T8608 T8609 arg1Of IL-4,and
R6583 T8609 T8607 arg2Of and,to
R6584 T8610 T8609 arg2Of TGF-β,and
R6585 T8613 T8614 arg1Of GATA3,and
R6586 T8614 T8616 arg1Of and,are
R6587 T8614 T8618 arg2Of and,found
R6588 T8614 T8629 arg1Of and,co-express
R6589 T8614 T8638 arg1Of and,establishing
R6590 T8615 T8614 arg2Of FOXP3,and
R6591 T8618 T8616 arg2Of found,are
R6592 T8618 T8617 arg1Of found,initially
R6593 T8618 T8619 arg1Of found,in
R6594 T8618 T8627 arg1Of found,but
R6595 T8621 T8619 arg2Of populations,in
R6596 T8621 T8620 arg1Of populations,separate
R6597 T8621 T8622 arg1Of populations,(
R6598 T8623 T8622 arg2Of day,(
R6599 T8623 T8624 arg1Of day,2
R6600 T8625 T8622 arg3Of ),(
R6601 T8627 T8611 arg2Of but,demonstrated
R6602 T8627 T8612 arg1Of but,that
R6603 T8627 T8626 arg1Of but,","
R6604 T8627 T8655 arg1Of but,","
R6605 T8627 T8656 modOf but,suggesting
R6606 T8629 T8627 arg2Of co-express,but
R6607 T8629 T8628 arg1Of co-express,transiently
R6608 T8629 T8636 arg1Of co-express,","
R6609 T8629 T8637 arg1Of co-express,before
R6610 T8631 T8629 arg2Of factors,co-express
R6611 T8631 T8630 arg1Of factors,both
R6612 T8631 T8632 arg1Of factors,(
R6613 T8634 T8632 arg2Of 4–8,(
R6614 T8634 T8633 arg1Of 4–8,days
R6615 T8635 T8632 arg3Of ),(
R6616 T8638 T8637 arg2Of establishing,before
R6617 T8638 T8641 arg1Of establishing,at
R6618 T8640 T8638 arg2Of populations,establishing
R6619 T8640 T8639 arg1Of populations,separate
R6620 T8643 T8641 arg2Of end,at
R6621 T8643 T8642 arg1Of end,the
R6622 T8643 T8644 arg1Of end,of
R6623 T8647 T8644 arg2Of process,of
R6624 T8647 T8645 arg1Of process,the
R6625 T8647 T8646 arg1Of process,differentiation
R6626 T8647 T8648 arg1Of process,(
R6627 T8649 T8650 arg1Of day,10
R6628 T8649 T8651 arg1Of day,;
R6629 T8651 T8648 arg2Of ;,(
R6630 T8653 T8651 arg2Of 6C,;
R6631 T8653 T8652 arg1Of 6C,Figure
R6632 T8654 T8648 arg3Of ),(
R6633 T8658 T8659 arg1Of GATA3,inhibits
R6634 T8658 T8666 arg1Of GATA3,repressing
R6635 T8659 T8656 arg2Of inhibits,suggesting
R6636 T8659 T8657 arg1Of inhibits,that
R6637 T8659 T8665 arg1Of inhibits,by
R6638 T8661 T8659 arg2Of development,inhibits
R6639 T8661 T8660 arg1Of development,the
R6640 T8661 T8662 arg1Of development,of
R6641 T8664 T8662 arg2Of cells,of
R6642 T8664 T8663 arg1Of cells,iTreg
R6643 T8666 T8665 arg2Of repressing,by
R6644 T8667 T8666 arg2Of FOXP3,repressing

bionlp-st-ge-2016-coref

Id Subject Object Predicate Lexical cue
T8704 180-192 Anaphor denotes both factors
T8705 84-89 Antecedent denotes GATA3
T8706 94-99 Antecedent denotes FOXP3
R6681 T8704 T8705 boundBy both factors,GATA3
R6682 T8704 T8706 boundBy both factors,FOXP3

bionlp-st-ge-2016-spacy-parsed

Id Subject Object Predicate Lexical cue
T9036 0-3 DT denotes The
T9037 4-14 NN denotes expression
T9038 15-22 NN denotes kinetic
T9039 23-25 IN denotes of
T9040 26-31 JJ denotes naive
T9041 32-33 NNP denotes T
T9042 34-39 NNS denotes cells
T9043 40-47 VBN denotes exposed
T9044 48-50 TO denotes to
T9045 51-55 NN denotes IL-4
T9046 56-59 CC denotes and
T9047 60-65 JJ denotes TGF-β
T9048 66-78 VBD denotes demonstrated
T9049 79-83 IN denotes that
T9050 84-89 NNP denotes GATA3
T9051 90-93 CC denotes and
T9052 94-99 NNP denotes FOXP3
T9053 100-103 VBP denotes are
T9054 104-113 RB denotes initially
T9055 114-119 VBN denotes found
T9056 120-122 IN denotes in
T9057 123-131 JJ denotes separate
T9058 132-143 NNS denotes populations
T9059 144-145 -LRB- denotes (
T9060 145-148 NN denotes day
T9061 149-150 CD denotes 2
T9062 150-151 -RRB- denotes )
T9063 151-152 , denotes ,
T9064 153-156 CC denotes but
T9065 157-168 RB denotes transiently
T9066 169-179 JJ denotes co-express
T9067 180-184 DT denotes both
T9068 185-192 NNS denotes factors
T9069 193-194 -LRB- denotes (
T9070 194-198 NNS denotes days
T9071 199-200 CD denotes 4
T9072 201-202 CD denotes 8
T9073 202-203 -RRB- denotes )
T9074 203-204 , denotes ,
T9075 205-211 IN denotes before
T9076 212-224 VBG denotes establishing
T9077 225-233 JJ denotes separate
T9078 234-245 NNS denotes populations
T9079 246-248 IN denotes at
T9080 249-252 DT denotes the
T9081 253-256 NN denotes end
T9082 257-259 IN denotes of
T9083 260-263 DT denotes the
T9084 264-279 NN denotes differentiation
T9085 280-287 NN denotes process
T9086 288-289 -LRB- denotes (
T9087 289-292 NN denotes day
T9088 293-295 CD denotes 10
T9089 295-296 : denotes ;
T9090 297-303 NN denotes Figure
T9091 304-306 NN denotes 6C
T9092 306-307 -RRB- denotes )
T9093 307-308 , denotes ,
T9094 309-319 VBG denotes suggesting
T9095 320-324 IN denotes that
T9096 325-330 NNP denotes GATA3
T9097 331-339 VBZ denotes inhibits
T9098 340-343 DT denotes the
T9099 344-355 NN denotes development
T9100 356-358 IN denotes of
T9101 359-364 NNP denotes iTreg
T9102 365-370 NNS denotes cells
T9103 371-373 IN denotes by
T9104 374-384 VBG denotes repressing
T9105 385-390 NNP denotes FOXP3
T9106 390-391 . denotes .
R6955 T9036 T9038 det The,kinetic
R6956 T9037 T9038 compound expression,kinetic
R6957 T9038 T9043 nsubj kinetic,exposed
R6958 T9039 T9038 prep of,kinetic
R6959 T9040 T9042 amod naive,cells
R6960 T9041 T9042 compound T,cells
R6961 T9042 T9039 pobj cells,of
R6962 T9043 T9048 csubj exposed,demonstrated
R6963 T9044 T9043 prep to,exposed
R6964 T9045 T9044 pobj IL-4,to
R6965 T9046 T9045 cc and,IL-4
R6966 T9047 T9045 conj TGF-β,IL-4
R6967 T9048 T9048 ROOT demonstrated,demonstrated
R6968 T9049 T9055 mark that,found
R6969 T9050 T9055 nsubjpass GATA3,found
R6970 T9051 T9050 cc and,GATA3
R6971 T9052 T9050 conj FOXP3,GATA3
R6972 T9053 T9055 auxpass are,found
R6973 T9054 T9055 advmod initially,found
R6974 T9055 T9048 ccomp found,demonstrated
R6975 T9056 T9055 prep in,found
R6976 T9057 T9058 amod separate,populations
R6977 T9058 T9056 pobj populations,in
R6978 T9059 T9060 punct (,day
R6979 T9060 T9055 npadvmod day,found
R6980 T9061 T9060 nummod 2,day
R6981 T9062 T9060 punct ),day
R6982 T9063 T9055 punct ",",found
R6983 T9064 T9055 cc but,found
R6984 T9065 T9066 advmod transiently,co-express
R6985 T9066 T9068 nummod co-express,factors
R6986 T9067 T9068 det both,factors
R6987 T9068 T9048 dobj factors,demonstrated
R6988 T9069 T9068 punct (,factors
R6989 T9070 T9068 appos days,factors
R6990 T9071 T9070 nummod 4,days
R6991 T9072 T9070 appos 8,days
R6992 T9073 T9070 punct ),days
R6993 T9074 T9068 punct ",",factors
R6994 T9075 T9087 prep before,day
R6995 T9076 T9075 pcomp establishing,before
R6996 T9077 T9078 amod separate,populations
R6997 T9078 T9076 dobj populations,establishing
R6998 T9079 T9076 prep at,establishing
R6999 T9080 T9081 det the,end
R7000 T9081 T9079 pobj end,at
R7001 T9082 T9081 prep of,end
R7002 T9083 T9085 det the,process
R7003 T9084 T9085 compound differentiation,process
R7004 T9085 T9082 pobj process,of
R7005 T9086 T9087 punct (,day
R7006 T9087 T9068 appos day,factors
R7007 T9088 T9087 nummod 10,day
R7008 T9089 T9068 punct ;,factors
R7009 T9090 T9091 compound Figure,6C
R7010 T9091 T9068 appos 6C,factors
R7011 T9092 T9068 punct ),factors
R7012 T9093 T9048 punct ",",demonstrated
R7013 T9094 T9048 advcl suggesting,demonstrated
R7014 T9095 T9097 mark that,inhibits
R7015 T9096 T9097 nsubj GATA3,inhibits
R7016 T9097 T9094 ccomp inhibits,suggesting
R7017 T9098 T9099 det the,development
R7018 T9099 T9097 dobj development,inhibits
R7019 T9100 T9099 prep of,development
R7020 T9101 T9102 compound iTreg,cells
R7021 T9102 T9100 pobj cells,of
R7022 T9103 T9097 prep by,inhibits
R7023 T9104 T9103 pcomp repressing,by
R7024 T9105 T9104 dobj FOXP3,repressing
R7025 T9106 T9048 punct .,demonstrated

GO-BP

Id Subject Object Predicate Lexical cue
T8277 344-355 http://purl.obolibrary.org/obo/GO_0032502 denotes development

GO-MF

Id Subject Object Predicate Lexical cue
T9223 51-55 http://purl.obolibrary.org/obo/GO_0005136 denotes IL-4

GO-CC

Id Subject Object Predicate Lexical cue
T9239 34-39 http://purl.obolibrary.org/obo/GO_0005623 denotes cells
T9240 365-370 http://purl.obolibrary.org/obo/GO_0005623 denotes cells

sentences

Id Subject Object Predicate Lexical cue
T8271 0-391 Sentence denotes The expression kinetic of naive T cells exposed to IL-4 and TGF-β demonstrated that GATA3 and FOXP3 are initially found in separate populations (day 2), but transiently co-express both factors (days 4–8), before establishing separate populations at the end of the differentiation process (day 10; Figure 6C), suggesting that GATA3 inhibits the development of iTreg cells by repressing FOXP3.
T149 0-391 Sentence denotes The expression kinetic of naive T cells exposed to IL-4 and TGF-β demonstrated that GATA3 and FOXP3 are initially found in separate populations (day 2), but transiently co-express both factors (days 4–8), before establishing separate populations at the end of the differentiation process (day 10; Figure 6C), suggesting that GATA3 inhibits the development of iTreg cells by repressing FOXP3.

events-check-again

Id Subject Object Predicate Lexical cue Speculation
T9486 51-55 Protein denotes IL-4
T9487 60-65 Protein denotes TGF-β
T9488 66-78 Positive_regulation denotes demonstrated
T9489 66-78 Positive_regulation denotes demonstrated
T9490 66-78 Positive_regulation denotes demonstrated
T9491 66-78 Positive_regulation denotes demonstrated
T9492 84-89 Protein denotes GATA3
T9493 94-99 Protein denotes FOXP3
T9494 169-179 Gene_expression denotes co-express
T9495 169-179 Gene_expression denotes co-express
T9496 325-330 Protein denotes GATA3
T9497 374-384 Negative_regulation denotes repressing true
T9498 385-390 Protein denotes FOXP3
R7232 T9486 T9488 causeOf IL-4,demonstrated
R7233 T9486 T9490 causeOf IL-4,demonstrated
R7234 T9487 T9489 causeOf TGF-β,demonstrated
R7235 T9487 T9491 causeOf TGF-β,demonstrated
R7236 T9492 T9494 themeOf GATA3,co-express
R7237 T9493 T9495 themeOf FOXP3,co-express
R7238 T9494 T9488 themeOf co-express,demonstrated
R7239 T9494 T9489 themeOf co-express,demonstrated
R7240 T9495 T9490 themeOf co-express,demonstrated
R7241 T9495 T9491 themeOf co-express,demonstrated
R7242 T9496 T9497 causeOf GATA3,repressing
R7243 T9498 T9497 themeOf FOXP3,repressing

bionlp-st-ge-2016-reference

Id Subject Object Predicate Lexical cue Speculation
T8289 66-78 Positive_regulation denotes demonstrated
T8290 169-179 Gene_expression denotes co-express
T8292 66-78 Positive_regulation denotes demonstrated
T8293 66-78 Positive_regulation denotes demonstrated
T8294 169-179 Gene_expression denotes co-express
T8295 66-78 Positive_regulation denotes demonstrated
T8296 374-384 Negative_regulation denotes repressing true
T8339 325-330 Protein denotes GATA3
T8341 385-390 Protein denotes FOXP3
T8335 51-55 Protein denotes IL-4
T8336 60-65 Protein denotes TGF-β
T8337 84-89 Protein denotes GATA3
T8338 94-99 Protein denotes FOXP3
R6280 T8290 T8289 themeOf co-express,demonstrated
R6281 T8290 T8292 themeOf co-express,demonstrated
R6283 T8294 T8293 themeOf co-express,demonstrated
R6284 T8294 T8295 themeOf co-express,demonstrated
R6302 T8335 T8289 causeOf IL-4,demonstrated
R6303 T8335 T8293 causeOf IL-4,demonstrated
R6304 T8336 T8292 causeOf TGF-β,demonstrated
R6305 T8336 T8295 causeOf TGF-β,demonstrated
R6306 T8337 T8290 themeOf GATA3,co-express
R6307 T8338 T8294 themeOf FOXP3,co-express
R6308 T8339 T8296 causeOf GATA3,repressing
R6310 T8341 T8296 themeOf FOXP3,repressing

bionlp-st-ge-2016-uniprot

Id Subject Object Predicate Lexical cue
T8742 51-55 P05112 denotes IL-4
T8743 60-65 P01137 denotes TGF-β
T8744 84-89 P23771 denotes GATA3
T8745 94-99 Q9BZS1 denotes FOXP3
T8746 325-330 P23771 denotes GATA3
T8747 385-390 Q9BZS1 denotes FOXP3

test2

Id Subject Object Predicate Lexical cue
T8245 51-55 Protein denotes IL-4
T8246 60-65 Protein denotes TGF-β
T8247 84-89 Protein denotes GATA3
T8248 94-99 Protein denotes FOXP3
T8249 169-179 Gene_expression denotes co-express
T8250 325-330 Protein denotes GATA3
T8251 374-384 Negative_regulation denotes repressing
T8252 385-390 Protein denotes FOXP3
R6270 T8247 T8249 themeOf GATA3,co-express
R6271 T8248 T8249 themeOf FOXP3,co-express
R6272 T8250 T8251 causeOf GATA3,repressing
R6273 T8250 T8249 themeOf GATA3,co-express
R6274 T8252 T8251 themeOf FOXP3,repressing