PMC:1420271 / 17460-18413 JSONTXT

Annnotations TAB JSON ListView MergeView

    craft-ca-core-dev

    {"project":"craft-ca-core-dev","denotations":[{"id":"T9778","span":{"begin":53,"end":61},"obj":"CL:0002322"},{"id":"T9779","span":{"begin":62,"end":69},"obj":"SO:0001026"},{"id":"T9780","span":{"begin":103,"end":113},"obj":"GO:0019835"},{"id":"T9781","span":{"begin":114,"end":122},"obj":"CHEBI:75958"},{"id":"T9782","span":{"begin":172,"end":179},"obj":"SO:0001026"},{"id":"T9783","span":{"begin":240,"end":247},"obj":"CHEBI:2511"},{"id":"T9784","span":{"begin":273,"end":278},"obj":"CHEBI:25614"},{"id":"T9785","span":{"begin":313,"end":315},"obj":"SO:0000028"},{"id":"T9786","span":{"begin":435,"end":442},"obj":"SO:0000112"},{"id":"T9787","span":{"begin":482,"end":484},"obj":"SO:0000028"},{"id":"T9788","span":{"begin":522,"end":524},"obj":"SO:0000028"},{"id":"T9789","span":{"begin":562,"end":564},"obj":"SO:0000028"},{"id":"T9790","span":{"begin":591,"end":598},"obj":"SO:0001026"},{"id":"T9791","span":{"begin":670,"end":672},"obj":"SO:0000028"},{"id":"T9792","span":{"begin":800,"end":807},"obj":"SO:0000112"},{"id":"T9793","span":{"begin":819,"end":829},"obj":"GO:0097617"},{"id":"T9794","span":{"begin":842,"end":844},"obj":"SO:0000028"},{"id":"T9795","span":{"begin":884,"end":886},"obj":"SO:0000028"},{"id":"T9796","span":{"begin":925,"end":927},"obj":"SO:0000028"}],"text":"Southern blot screening for homologous recombination\nES cells genomic DNA was extracted with PUREGENE™ Cell Lysis Solution (Gentra systems). For 5' Southern blot analysis, genomic DNA was first digested with PstI, then separated on an 0.8% agarose gel and transferred to a nylon membrane as described [20]. A 560 bp 5' probe was amplified using the ESG1S5 (5'- GATGGTGGTGGTGACTCAGAG -3') and ESG1AS5 as (5'- CCTCCATTGCCTCTATATCAG -3') primers. The probe specifically labeled an 18 kbp band from the wild-type locus, a 15 kbp band from the β-geo locus, and a 12 kbp band from the HygR locus. Genomic DNA was also digested with SpeI for 3' Southern blot analysis. A 1,010 bp 3' probe was amplified with the pH34U-8000 (5'- CCAACCAGCCAGAGTTTCAGTTAT -3') and pH34L-9000 (5'-GATAAGCTGCTGCCAAAAGACAAG -3') primers. The probe hybridized to an 11.5 kbp band from the wild-type locus, a 12.5 kbp band from the β-geo locus, and a 9.5 kbp band from the HygR locus."}

    craft-ca-core-ex-dev

    {"project":"craft-ca-core-ex-dev","denotations":[{"id":"T9797","span":{"begin":39,"end":52},"obj":"GO_SO_EXT:sequence_rearrangement_process"},{"id":"T9798","span":{"begin":53,"end":61},"obj":"CL:0002322"},{"id":"T9799","span":{"begin":56,"end":61},"obj":"CL_GO_EXT:cell"},{"id":"T9800","span":{"begin":62,"end":73},"obj":"SO_EXT:genomic_DNA"},{"id":"T9801","span":{"begin":70,"end":73},"obj":"CHEBI_SO_EXT:DNA"},{"id":"T9802","span":{"begin":103,"end":107},"obj":"CL_GO_EXT:cell"},{"id":"T9803","span":{"begin":103,"end":113},"obj":"GO:0019835"},{"id":"T9804","span":{"begin":114,"end":122},"obj":"CHEBI:75958"},{"id":"T9805","span":{"begin":172,"end":183},"obj":"SO_EXT:genomic_DNA"},{"id":"T9806","span":{"begin":180,"end":183},"obj":"CHEBI_SO_EXT:DNA"},{"id":"T9807","span":{"begin":240,"end":247},"obj":"CHEBI:2511"},{"id":"T9808","span":{"begin":256,"end":267},"obj":"GO_EXT:biological_movement_or_translocation_process"},{"id":"T9809","span":{"begin":273,"end":278},"obj":"CHEBI:25614"},{"id":"T9810","span":{"begin":313,"end":315},"obj":"SO_EXT:0000028"},{"id":"T9811","span":{"begin":319,"end":324},"obj":"CHEBI_SO_EXT:molecular_probe"},{"id":"T9812","span":{"begin":435,"end":442},"obj":"SO_EXT:0000112"},{"id":"T9813","span":{"begin":448,"end":453},"obj":"CHEBI_SO_EXT:molecular_probe"},{"id":"T9814","span":{"begin":467,"end":474},"obj":"CHEBI_SO_EXT:molecular_label_or_mark_or_tag_process"},{"id":"T9815","span":{"begin":482,"end":484},"obj":"SO_EXT:0000028"},{"id":"T9816","span":{"begin":499,"end":508},"obj":"SO_EXT:wild_type_entity_or_quality"},{"id":"T9817","span":{"begin":522,"end":524},"obj":"SO_EXT:0000028"},{"id":"T9818","span":{"begin":539,"end":544},"obj":"GO_EXT:beta_geo"},{"id":"T9819","span":{"begin":562,"end":564},"obj":"SO_EXT:0000028"},{"id":"T9820","span":{"begin":591,"end":602},"obj":"SO_EXT:genomic_DNA"},{"id":"T9821","span":{"begin":599,"end":602},"obj":"CHEBI_SO_EXT:DNA"},{"id":"T9822","span":{"begin":670,"end":672},"obj":"SO_EXT:0000028"},{"id":"T9823","span":{"begin":676,"end":681},"obj":"CHEBI_SO_EXT:molecular_probe"},{"id":"T9824","span":{"begin":800,"end":807},"obj":"SO_EXT:0000112"},{"id":"T9825","span":{"begin":813,"end":818},"obj":"CHEBI_SO_EXT:molecular_probe"},{"id":"T9826","span":{"begin":819,"end":829},"obj":"GO:0097617"},{"id":"T9827","span":{"begin":842,"end":844},"obj":"SO_EXT:0000028"},{"id":"T9828","span":{"begin":859,"end":868},"obj":"SO_EXT:wild_type_entity_or_quality"},{"id":"T9829","span":{"begin":884,"end":886},"obj":"SO_EXT:0000028"},{"id":"T9830","span":{"begin":901,"end":906},"obj":"GO_EXT:beta_geo"},{"id":"T9831","span":{"begin":925,"end":927},"obj":"SO_EXT:0000028"}],"text":"Southern blot screening for homologous recombination\nES cells genomic DNA was extracted with PUREGENE™ Cell Lysis Solution (Gentra systems). For 5' Southern blot analysis, genomic DNA was first digested with PstI, then separated on an 0.8% agarose gel and transferred to a nylon membrane as described [20]. A 560 bp 5' probe was amplified using the ESG1S5 (5'- GATGGTGGTGGTGACTCAGAG -3') and ESG1AS5 as (5'- CCTCCATTGCCTCTATATCAG -3') primers. The probe specifically labeled an 18 kbp band from the wild-type locus, a 15 kbp band from the β-geo locus, and a 12 kbp band from the HygR locus. Genomic DNA was also digested with SpeI for 3' Southern blot analysis. A 1,010 bp 3' probe was amplified with the pH34U-8000 (5'- CCAACCAGCCAGAGTTTCAGTTAT -3') and pH34L-9000 (5'-GATAAGCTGCTGCCAAAAGACAAG -3') primers. The probe hybridized to an 11.5 kbp band from the wild-type locus, a 12.5 kbp band from the β-geo locus, and a 9.5 kbp band from the HygR locus."}

    craft-sa-dev

    {"project":"craft-sa-dev","denotations":[{"id":"T9832","span":{"begin":0,"end":8},"obj":"NNP"},{"id":"T9833","span":{"begin":9,"end":13},"obj":"NN"},{"id":"T9834","span":{"begin":14,"end":23},"obj":"NN"},{"id":"T9835","span":{"begin":24,"end":27},"obj":"IN"},{"id":"T9836","span":{"begin":28,"end":38},"obj":"JJ"},{"id":"T9837","span":{"begin":39,"end":52},"obj":"NN"},{"id":"T9838","span":{"begin":52,"end":140},"obj":"sentence"},{"id":"T9839","span":{"begin":53,"end":55},"obj":"NN"},{"id":"T9840","span":{"begin":56,"end":61},"obj":"NNS"},{"id":"T9841","span":{"begin":70,"end":73},"obj":"NN"},{"id":"T9842","span":{"begin":62,"end":69},"obj":"JJ"},{"id":"T9843","span":{"begin":78,"end":87},"obj":"VBN"},{"id":"T9844","span":{"begin":74,"end":77},"obj":"VBD"},{"id":"T9845","span":{"begin":88,"end":92},"obj":"IN"},{"id":"T9846","span":{"begin":93,"end":101},"obj":"NNP"},{"id":"T9847","span":{"begin":114,"end":122},"obj":"NN"},{"id":"T9848","span":{"begin":101,"end":102},"obj":"SYM"},{"id":"T9849","span":{"begin":103,"end":107},"obj":"NN"},{"id":"T9850","span":{"begin":108,"end":113},"obj":"NN"},{"id":"T9851","span":{"begin":123,"end":124},"obj":"-LRB-"},{"id":"T9852","span":{"begin":131,"end":138},"obj":"NNPS"},{"id":"T9853","span":{"begin":124,"end":130},"obj":"NNP"},{"id":"T9854","span":{"begin":138,"end":139},"obj":"-RRB-"},{"id":"T9855","span":{"begin":139,"end":140},"obj":"."},{"id":"T9856","span":{"begin":140,"end":306},"obj":"sentence"},{"id":"T9857","span":{"begin":141,"end":144},"obj":"IN"},{"id":"T9858","span":{"begin":194,"end":202},"obj":"VBN"},{"id":"T9859","span":{"begin":145,"end":146},"obj":"CD"},{"id":"T9860","span":{"begin":162,"end":170},"obj":"NN"},{"id":"T9861","span":{"begin":146,"end":147},"obj":"SYM"},{"id":"T9862","span":{"begin":148,"end":156},"obj":"NNP"},{"id":"T9863","span":{"begin":157,"end":161},"obj":"NN"},{"id":"T9864","span":{"begin":170,"end":172},"obj":","},{"id":"T9865","span":{"begin":172,"end":179},"obj":"JJ"},{"id":"T9866","span":{"begin":180,"end":183},"obj":"NN"},{"id":"T9867","span":{"begin":184,"end":187},"obj":"VBD"},{"id":"T9868","span":{"begin":188,"end":193},"obj":"RB"},{"id":"T9869","span":{"begin":203,"end":207},"obj":"IN"},{"id":"T9870","span":{"begin":208,"end":212},"obj":"NN"},{"id":"T9871","span":{"begin":212,"end":214},"obj":","},{"id":"T9872","span":{"begin":214,"end":218},"obj":"RB"},{"id":"T9873","span":{"begin":219,"end":228},"obj":"VBN"},{"id":"T9874","span":{"begin":229,"end":231},"obj":"IN"},{"id":"T9875","span":{"begin":232,"end":234},"obj":"DT"},{"id":"T9876","span":{"begin":248,"end":251},"obj":"NN"},{"id":"T9877","span":{"begin":235,"end":238},"obj":"CD"},{"id":"T9878","span":{"begin":238,"end":239},"obj":"NN"},{"id":"T9879","span":{"begin":240,"end":247},"obj":"NN"},{"id":"T9880","span":{"begin":252,"end":255},"obj":"CC"},{"id":"T9881","span":{"begin":256,"end":267},"obj":"VBN"},{"id":"T9882","span":{"begin":268,"end":270},"obj":"IN"},{"id":"T9883","span":{"begin":271,"end":272},"obj":"DT"},{"id":"T9884","span":{"begin":279,"end":287},"obj":"NN"},{"id":"T9885","span":{"begin":273,"end":278},"obj":"NN"},{"id":"T9886","span":{"begin":288,"end":290},"obj":"IN"},{"id":"T9887","span":{"begin":291,"end":300},"obj":"VBN"},{"id":"T9888","span":{"begin":301,"end":302},"obj":"-LRB-"},{"id":"T9889","span":{"begin":302,"end":304},"obj":"CD"},{"id":"T9890","span":{"begin":304,"end":305},"obj":"-RRB-"},{"id":"T9891","span":{"begin":305,"end":306},"obj":"."},{"id":"T9892","span":{"begin":306,"end":443},"obj":"sentence"},{"id":"T9893","span":{"begin":307,"end":308},"obj":"DT"},{"id":"T9894","span":{"begin":319,"end":324},"obj":"NN"},{"id":"T9895","span":{"begin":309,"end":312},"obj":"CD"},{"id":"T9896","span":{"begin":313,"end":315},"obj":"NN"},{"id":"T9897","span":{"begin":316,"end":317},"obj":"CD"},{"id":"T9898","span":{"begin":317,"end":318},"obj":"SYM"},{"id":"T9899","span":{"begin":329,"end":338},"obj":"VBN"},{"id":"T9900","span":{"begin":325,"end":328},"obj":"VBD"},{"id":"T9901","span":{"begin":339,"end":344},"obj":"VBG"},{"id":"T9902","span":{"begin":345,"end":348},"obj":"DT"},{"id":"T9903","span":{"begin":349,"end":355},"obj":"NN"},{"id":"T9904","span":{"begin":356,"end":357},"obj":"-LRB-"},{"id":"T9905","span":{"begin":361,"end":382},"obj":"NN"},{"id":"T9906","span":{"begin":357,"end":358},"obj":"CD"},{"id":"T9907","span":{"begin":358,"end":359},"obj":"SYM"},{"id":"T9908","span":{"begin":359,"end":360},"obj":"HYPH"},{"id":"T9909","span":{"begin":383,"end":384},"obj":"HYPH"},{"id":"T9910","span":{"begin":384,"end":385},"obj":"CD"},{"id":"T9911","span":{"begin":385,"end":386},"obj":"SYM"},{"id":"T9912","span":{"begin":386,"end":387},"obj":"-RRB-"},{"id":"T9913","span":{"begin":388,"end":391},"obj":"CC"},{"id":"T9914","span":{"begin":392,"end":399},"obj":"NN"},{"id":"T9915","span":{"begin":400,"end":402},"obj":"IN"},{"id":"T9916","span":{"begin":403,"end":404},"obj":"-LRB-"},{"id":"T9917","span":{"begin":435,"end":442},"obj":"NNS"},{"id":"T9918","span":{"begin":404,"end":405},"obj":"CD"},{"id":"T9919","span":{"begin":408,"end":429},"obj":"NN"},{"id":"T9920","span":{"begin":405,"end":406},"obj":"SYM"},{"id":"T9921","span":{"begin":406,"end":407},"obj":"HYPH"},{"id":"T9922","span":{"begin":430,"end":431},"obj":"HYPH"},{"id":"T9923","span":{"begin":431,"end":432},"obj":"CD"},{"id":"T9924","span":{"begin":432,"end":433},"obj":"SYM"},{"id":"T9925","span":{"begin":433,"end":434},"obj":"-RRB-"},{"id":"T9926","span":{"begin":442,"end":443},"obj":"."},{"id":"T9927","span":{"begin":443,"end":590},"obj":"sentence"},{"id":"T9928","span":{"begin":444,"end":447},"obj":"DT"},{"id":"T9929","span":{"begin":448,"end":453},"obj":"NN"},{"id":"T9930","span":{"begin":467,"end":474},"obj":"VBD"},{"id":"T9931","span":{"begin":454,"end":466},"obj":"RB"},{"id":"T9932","span":{"begin":475,"end":477},"obj":"DT"},{"id":"T9933","span":{"begin":485,"end":489},"obj":"NN"},{"id":"T9934","span":{"begin":478,"end":480},"obj":"CD"},{"id":"T9935","span":{"begin":481,"end":484},"obj":"NN"},{"id":"T9936","span":{"begin":490,"end":494},"obj":"IN"},{"id":"T9937","span":{"begin":495,"end":498},"obj":"DT"},{"id":"T9938","span":{"begin":509,"end":514},"obj":"NN"},{"id":"T9939","span":{"begin":499,"end":503},"obj":"JJ"},{"id":"T9940","span":{"begin":503,"end":504},"obj":"HYPH"},{"id":"T9941","span":{"begin":504,"end":508},"obj":"NN"},{"id":"T9942","span":{"begin":514,"end":516},"obj":","},{"id":"T9943","span":{"begin":516,"end":517},"obj":"DT"},{"id":"T9944","span":{"begin":525,"end":529},"obj":"NN"},{"id":"T9945","span":{"begin":518,"end":520},"obj":"CD"},{"id":"T9946","span":{"begin":521,"end":524},"obj":"NN"},{"id":"T9947","span":{"begin":530,"end":534},"obj":"IN"},{"id":"T9948","span":{"begin":535,"end":538},"obj":"DT"},{"id":"T9949","span":{"begin":545,"end":550},"obj":"NN"},{"id":"T9950","span":{"begin":539,"end":540},"obj":"NN"},{"id":"T9951","span":{"begin":541,"end":544},"obj":"NN"},{"id":"T9952","span":{"begin":540,"end":541},"obj":"HYPH"},{"id":"T9953","span":{"begin":550,"end":552},"obj":","},{"id":"T9954","span":{"begin":552,"end":555},"obj":"CC"},{"id":"T9955","span":{"begin":556,"end":557},"obj":"DT"},{"id":"T9956","span":{"begin":565,"end":569},"obj":"NN"},{"id":"T9957","span":{"begin":558,"end":560},"obj":"CD"},{"id":"T9958","span":{"begin":561,"end":564},"obj":"NN"},{"id":"T9959","span":{"begin":570,"end":574},"obj":"IN"},{"id":"T9960","span":{"begin":575,"end":578},"obj":"DT"},{"id":"T9961","span":{"begin":584,"end":589},"obj":"NN"},{"id":"T9962","span":{"begin":579,"end":583},"obj":"NN"},{"id":"T9963","span":{"begin":589,"end":590},"obj":"."},{"id":"T9964","span":{"begin":590,"end":661},"obj":"sentence"},{"id":"T9965","span":{"begin":591,"end":598},"obj":"JJ"},{"id":"T9966","span":{"begin":599,"end":602},"obj":"NN"},{"id":"T9967","span":{"begin":612,"end":620},"obj":"VBN"},{"id":"T9968","span":{"begin":603,"end":606},"obj":"VBD"},{"id":"T9969","span":{"begin":607,"end":611},"obj":"RB"},{"id":"T9970","span":{"begin":621,"end":625},"obj":"IN"},{"id":"T9971","span":{"begin":626,"end":630},"obj":"NN"},{"id":"T9972","span":{"begin":631,"end":634},"obj":"IN"},{"id":"T9973","span":{"begin":635,"end":636},"obj":"CD"},{"id":"T9974","span":{"begin":652,"end":660},"obj":"NN"},{"id":"T9975","span":{"begin":636,"end":637},"obj":"SYM"},{"id":"T9976","span":{"begin":638,"end":646},"obj":"NNP"},{"id":"T9977","span":{"begin":647,"end":651},"obj":"NN"},{"id":"T9978","span":{"begin":660,"end":661},"obj":"."},{"id":"T9979","span":{"begin":661,"end":808},"obj":"sentence"},{"id":"T9980","span":{"begin":662,"end":663},"obj":"DT"},{"id":"T9981","span":{"begin":676,"end":681},"obj":"NN"},{"id":"T9982","span":{"begin":664,"end":669},"obj":"CD"},{"id":"T9983","span":{"begin":670,"end":672},"obj":"NN"},{"id":"T9984","span":{"begin":673,"end":674},"obj":"CD"},{"id":"T9985","span":{"begin":674,"end":675},"obj":"SYM"},{"id":"T9986","span":{"begin":686,"end":695},"obj":"VBN"},{"id":"T9987","span":{"begin":682,"end":685},"obj":"VBD"},{"id":"T9988","span":{"begin":696,"end":700},"obj":"IN"},{"id":"T9989","span":{"begin":701,"end":704},"obj":"DT"},{"id":"T9990","span":{"begin":800,"end":807},"obj":"NNS"},{"id":"T9991","span":{"begin":705,"end":710},"obj":"NN"},{"id":"T9992","span":{"begin":710,"end":711},"obj":"HYPH"},{"id":"T9993","span":{"begin":711,"end":715},"obj":"CD"},{"id":"T9994","span":{"begin":716,"end":717},"obj":"-LRB-"},{"id":"T9995","span":{"begin":721,"end":745},"obj":"NN"},{"id":"T9996","span":{"begin":717,"end":718},"obj":"CD"},{"id":"T9997","span":{"begin":718,"end":719},"obj":"SYM"},{"id":"T9998","span":{"begin":719,"end":720},"obj":"HYPH"},{"id":"T9999","span":{"begin":746,"end":747},"obj":"HYPH"},{"id":"T10000","span":{"begin":747,"end":748},"obj":"CD"},{"id":"T10001","span":{"begin":748,"end":749},"obj":"SYM"},{"id":"T10002","span":{"begin":749,"end":750},"obj":"-RRB-"},{"id":"T10003","span":{"begin":751,"end":754},"obj":"CC"},{"id":"T10004","span":{"begin":755,"end":760},"obj":"NN"},{"id":"T10005","span":{"begin":760,"end":761},"obj":"HYPH"},{"id":"T10006","span":{"begin":761,"end":765},"obj":"CD"},{"id":"T10007","span":{"begin":766,"end":767},"obj":"-LRB-"},{"id":"T10008","span":{"begin":770,"end":794},"obj":"NN"},{"id":"T10009","span":{"begin":767,"end":768},"obj":"CD"},{"id":"T10010","span":{"begin":768,"end":769},"obj":"SYM"},{"id":"T10011","span":{"begin":769,"end":770},"obj":"HYPH"},{"id":"T10012","span":{"begin":795,"end":796},"obj":"HYPH"},{"id":"T10013","span":{"begin":796,"end":797},"obj":"CD"},{"id":"T10014","span":{"begin":797,"end":798},"obj":"SYM"},{"id":"T10015","span":{"begin":798,"end":799},"obj":"-RRB-"},{"id":"T10016","span":{"begin":807,"end":808},"obj":"."},{"id":"T10017","span":{"begin":808,"end":953},"obj":"sentence"},{"id":"T10018","span":{"begin":809,"end":812},"obj":"DT"},{"id":"T10019","span":{"begin":813,"end":818},"obj":"NN"},{"id":"T10020","span":{"begin":819,"end":829},"obj":"VBD"},{"id":"T10021","span":{"begin":830,"end":832},"obj":"IN"},{"id":"T10022","span":{"begin":833,"end":835},"obj":"DT"},{"id":"T10023","span":{"begin":845,"end":849},"obj":"NN"},{"id":"T10024","span":{"begin":836,"end":840},"obj":"CD"},{"id":"T10025","span":{"begin":841,"end":844},"obj":"NN"},{"id":"T10026","span":{"begin":850,"end":854},"obj":"IN"},{"id":"T10027","span":{"begin":855,"end":858},"obj":"DT"},{"id":"T10028","span":{"begin":869,"end":874},"obj":"NN"},{"id":"T10029","span":{"begin":859,"end":863},"obj":"JJ"},{"id":"T10030","span":{"begin":864,"end":868},"obj":"NN"},{"id":"T10031","span":{"begin":863,"end":864},"obj":"HYPH"},{"id":"T10032","span":{"begin":874,"end":876},"obj":","},{"id":"T10033","span":{"begin":876,"end":877},"obj":"DT"},{"id":"T10034","span":{"begin":887,"end":891},"obj":"NN"},{"id":"T10035","span":{"begin":878,"end":882},"obj":"CD"},{"id":"T10036","span":{"begin":883,"end":886},"obj":"NN"},{"id":"T10037","span":{"begin":892,"end":896},"obj":"IN"},{"id":"T10038","span":{"begin":897,"end":900},"obj":"DT"},{"id":"T10039","span":{"begin":907,"end":912},"obj":"NN"},{"id":"T10040","span":{"begin":901,"end":902},"obj":"NN"},{"id":"T10041","span":{"begin":903,"end":906},"obj":"NN"},{"id":"T10042","span":{"begin":902,"end":903},"obj":"HYPH"},{"id":"T10043","span":{"begin":912,"end":914},"obj":","},{"id":"T10044","span":{"begin":914,"end":917},"obj":"CC"},{"id":"T10045","span":{"begin":918,"end":919},"obj":"DT"},{"id":"T10046","span":{"begin":928,"end":932},"obj":"NN"},{"id":"T10047","span":{"begin":920,"end":923},"obj":"CD"},{"id":"T10048","span":{"begin":924,"end":927},"obj":"NN"},{"id":"T10049","span":{"begin":933,"end":937},"obj":"IN"},{"id":"T10050","span":{"begin":938,"end":941},"obj":"DT"},{"id":"T10051","span":{"begin":947,"end":952},"obj":"NN"},{"id":"T10052","span":{"begin":942,"end":946},"obj":"NN"},{"id":"T10053","span":{"begin":952,"end":953},"obj":"."}],"relations":[{"id":"R2683","pred":"compound","subj":"T9832","obj":"T9833"},{"id":"R2684","pred":"compound","subj":"T9833","obj":"T9834"},{"id":"R2685","pred":"prep","subj":"T9835","obj":"T9834"},{"id":"R2686","pred":"amod","subj":"T9836","obj":"T9837"},{"id":"R2687","pred":"pobj","subj":"T9837","obj":"T9835"},{"id":"R2688","pred":"nmod","subj":"T9839","obj":"T9840"},{"id":"R2689","pred":"nmod","subj":"T9840","obj":"T9841"},{"id":"R2690","pred":"nsubjpass","subj":"T9841","obj":"T9843"},{"id":"R2691","pred":"amod","subj":"T9842","obj":"T9841"},{"id":"R2692","pred":"auxpass","subj":"T9844","obj":"T9843"},{"id":"R2693","pred":"prep","subj":"T9845","obj":"T9843"},{"id":"R2694","pred":"nmod","subj":"T9846","obj":"T9847"},{"id":"R2695","pred":"pobj","subj":"T9847","obj":"T9845"},{"id":"R2696","pred":"punct","subj":"T9848","obj":"T9846"},{"id":"R2697","pred":"compound","subj":"T9849","obj":"T9850"},{"id":"R2698","pred":"compound","subj":"T9850","obj":"T9847"},{"id":"R2699","pred":"punct","subj":"T9851","obj":"T9852"},{"id":"R2700","pred":"parataxis","subj":"T9852","obj":"T9847"},{"id":"R2701","pred":"compound","subj":"T9853","obj":"T9852"},{"id":"R2702","pred":"punct","subj":"T9854","obj":"T9852"},{"id":"R2703","pred":"punct","subj":"T9855","obj":"T9843"},{"id":"R2704","pred":"prep","subj":"T9857","obj":"T9858"},{"id":"R2705","pred":"nummod","subj":"T9859","obj":"T9860"},{"id":"R2706","pred":"pobj","subj":"T9860","obj":"T9857"},{"id":"R2707","pred":"punct","subj":"T9861","obj":"T9859"},{"id":"R2708","pred":"compound","subj":"T9862","obj":"T9863"},{"id":"R2709","pred":"compound","subj":"T9863","obj":"T9860"},{"id":"R2710","pred":"punct","subj":"T9864","obj":"T9858"},{"id":"R2711","pred":"amod","subj":"T9865","obj":"T9866"},{"id":"R2712","pred":"nsubjpass","subj":"T9866","obj":"T9858"},{"id":"R2713","pred":"auxpass","subj":"T9867","obj":"T9858"},{"id":"R2714","pred":"advmod","subj":"T9868","obj":"T9858"},{"id":"R2715","pred":"prep","subj":"T9869","obj":"T9858"},{"id":"R2716","pred":"pobj","subj":"T9870","obj":"T9869"},{"id":"R2717","pred":"punct","subj":"T9871","obj":"T9858"},{"id":"R2718","pred":"advmod","subj":"T9872","obj":"T9873"},{"id":"R2719","pred":"conj","subj":"T9873","obj":"T9858"},{"id":"R2720","pred":"prep","subj":"T9874","obj":"T9873"},{"id":"R2721","pred":"det","subj":"T9875","obj":"T9876"},{"id":"R2722","pred":"pobj","subj":"T9876","obj":"T9874"},{"id":"R2723","pred":"nummod","subj":"T9877","obj":"T9878"},{"id":"R2724","pred":"compound","subj":"T9878","obj":"T9876"},{"id":"R2725","pred":"compound","subj":"T9879","obj":"T9876"},{"id":"R2726","pred":"cc","subj":"T9880","obj":"T9873"},{"id":"R2727","pred":"conj","subj":"T9881","obj":"T9873"},{"id":"R2728","pred":"prep","subj":"T9882","obj":"T9881"},{"id":"R2729","pred":"det","subj":"T9883","obj":"T9884"},{"id":"R2730","pred":"pobj","subj":"T9884","obj":"T9882"},{"id":"R2731","pred":"compound","subj":"T9885","obj":"T9884"},{"id":"R2732","pred":"mark","subj":"T9886","obj":"T9887"},{"id":"R2733","pred":"advcl","subj":"T9887","obj":"T9881"},{"id":"R2734","pred":"punct","subj":"T9888","obj":"T9889"},{"id":"R2735","pred":"parataxis","subj":"T9889","obj":"T9887"},{"id":"R2736","pred":"punct","subj":"T9890","obj":"T9889"},{"id":"R2737","pred":"punct","subj":"T9891","obj":"T9858"},{"id":"R2738","pred":"det","subj":"T9893","obj":"T9894"},{"id":"R2739","pred":"nsubjpass","subj":"T9894","obj":"T9899"},{"id":"R2740","pred":"nummod","subj":"T9895","obj":"T9896"},{"id":"R2741","pred":"nmod","subj":"T9896","obj":"T9894"},{"id":"R2742","pred":"nummod","subj":"T9897","obj":"T9894"},{"id":"R2743","pred":"punct","subj":"T9898","obj":"T9897"},{"id":"R2744","pred":"auxpass","subj":"T9900","obj":"T9899"},{"id":"R2745","pred":"advcl","subj":"T9901","obj":"T9899"},{"id":"R2746","pred":"det","subj":"T9902","obj":"T9903"},{"id":"R2747","pred":"dobj","subj":"T9903","obj":"T9901"},{"id":"R2748","pred":"punct","subj":"T9904","obj":"T9905"},{"id":"R2749","pred":"parataxis","subj":"T9905","obj":"T9903"},{"id":"R2750","pred":"nummod","subj":"T9906","obj":"T9905"},{"id":"R2751","pred":"punct","subj":"T9907","obj":"T9906"},{"id":"R2752","pred":"punct","subj":"T9908","obj":"T9905"},{"id":"R2753","pred":"punct","subj":"T9909","obj":"T9905"},{"id":"R2754","pred":"nummod","subj":"T9910","obj":"T9905"},{"id":"R2755","pred":"punct","subj":"T9911","obj":"T9905"},{"id":"R2756","pred":"punct","subj":"T9912","obj":"T9905"},{"id":"R2757","pred":"cc","subj":"T9913","obj":"T9903"},{"id":"R2758","pred":"conj","subj":"T9914","obj":"T9903"},{"id":"R2759","pred":"prep","subj":"T9915","obj":"T9901"},{"id":"R2760","pred":"punct","subj":"T9916","obj":"T9917"},{"id":"R2761","pred":"pobj","subj":"T9917","obj":"T9915"},{"id":"R2762","pred":"nummod","subj":"T9918","obj":"T9919"},{"id":"R2763","pred":"nmod","subj":"T9919","obj":"T9917"},{"id":"R2764","pred":"punct","subj":"T9920","obj":"T9918"},{"id":"R2765","pred":"punct","subj":"T9921","obj":"T9919"},{"id":"R2766","pred":"punct","subj":"T9922","obj":"T9919"},{"id":"R2767","pred":"nummod","subj":"T9923","obj":"T9919"},{"id":"R2768","pred":"punct","subj":"T9924","obj":"T9919"},{"id":"R2769","pred":"punct","subj":"T9925","obj":"T9919"},{"id":"R2770","pred":"punct","subj":"T9926","obj":"T9899"},{"id":"R2771","pred":"det","subj":"T9928","obj":"T9929"},{"id":"R2772","pred":"nsubj","subj":"T9929","obj":"T9930"},{"id":"R2773","pred":"advmod","subj":"T9931","obj":"T9930"},{"id":"R2774","pred":"det","subj":"T9932","obj":"T9933"},{"id":"R2775","pred":"dobj","subj":"T9933","obj":"T9930"},{"id":"R2776","pred":"nummod","subj":"T9934","obj":"T9935"},{"id":"R2777","pred":"compound","subj":"T9935","obj":"T9933"},{"id":"R2778","pred":"prep","subj":"T9936","obj":"T9933"},{"id":"R2779","pred":"det","subj":"T9937","obj":"T9938"},{"id":"R2780","pred":"pobj","subj":"T9938","obj":"T9936"},{"id":"R2781","pred":"nmod","subj":"T9939","obj":"T9938"},{"id":"R2782","pred":"punct","subj":"T9940","obj":"T9939"},{"id":"R2783","pred":"compound","subj":"T9941","obj":"T9938"},{"id":"R2784","pred":"punct","subj":"T9942","obj":"T9933"},{"id":"R2785","pred":"det","subj":"T9943","obj":"T9944"},{"id":"R2786","pred":"conj","subj":"T9944","obj":"T9933"},{"id":"R2787","pred":"nummod","subj":"T9945","obj":"T9946"},{"id":"R2788","pred":"compound","subj":"T9946","obj":"T9944"},{"id":"R2789","pred":"prep","subj":"T9947","obj":"T9944"},{"id":"R2790","pred":"det","subj":"T9948","obj":"T9949"},{"id":"R2791","pred":"pobj","subj":"T9949","obj":"T9947"},{"id":"R2792","pred":"compound","subj":"T9950","obj":"T9951"},{"id":"R2793","pred":"compound","subj":"T9951","obj":"T9949"},{"id":"R2794","pred":"punct","subj":"T9952","obj":"T9951"},{"id":"R2795","pred":"punct","subj":"T9953","obj":"T9944"},{"id":"R2796","pred":"cc","subj":"T9954","obj":"T9944"},{"id":"R2797","pred":"det","subj":"T9955","obj":"T9956"},{"id":"R2798","pred":"conj","subj":"T9956","obj":"T9944"},{"id":"R2799","pred":"nummod","subj":"T9957","obj":"T9958"},{"id":"R2800","pred":"compound","subj":"T9958","obj":"T9956"},{"id":"R2801","pred":"prep","subj":"T9959","obj":"T9956"},{"id":"R2802","pred":"det","subj":"T9960","obj":"T9961"},{"id":"R2803","pred":"pobj","subj":"T9961","obj":"T9959"},{"id":"R2804","pred":"compound","subj":"T9962","obj":"T9961"},{"id":"R2805","pred":"punct","subj":"T9963","obj":"T9930"},{"id":"R2806","pred":"amod","subj":"T9965","obj":"T9966"},{"id":"R2807","pred":"nsubjpass","subj":"T9966","obj":"T9967"},{"id":"R2808","pred":"auxpass","subj":"T9968","obj":"T9967"},{"id":"R2809","pred":"advmod","subj":"T9969","obj":"T9967"},{"id":"R2810","pred":"prep","subj":"T9970","obj":"T9967"},{"id":"R2811","pred":"pobj","subj":"T9971","obj":"T9970"},{"id":"R2812","pred":"prep","subj":"T9972","obj":"T9967"},{"id":"R2813","pred":"nummod","subj":"T9973","obj":"T9974"},{"id":"R2814","pred":"pobj","subj":"T9974","obj":"T9972"},{"id":"R2815","pred":"punct","subj":"T9975","obj":"T9973"},{"id":"R2816","pred":"compound","subj":"T9976","obj":"T9977"},{"id":"R2817","pred":"compound","subj":"T9977","obj":"T9974"},{"id":"R2818","pred":"punct","subj":"T9978","obj":"T9967"},{"id":"R2819","pred":"det","subj":"T9980","obj":"T9981"},{"id":"R2820","pred":"nsubjpass","subj":"T9981","obj":"T9986"},{"id":"R2821","pred":"nummod","subj":"T9982","obj":"T9983"},{"id":"R2822","pred":"nmod","subj":"T9983","obj":"T9981"},{"id":"R2823","pred":"nummod","subj":"T9984","obj":"T9981"},{"id":"R2824","pred":"punct","subj":"T9985","obj":"T9984"},{"id":"R2825","pred":"auxpass","subj":"T9987","obj":"T9986"},{"id":"R2826","pred":"prep","subj":"T9988","obj":"T9986"},{"id":"R2827","pred":"det","subj":"T9989","obj":"T9990"},{"id":"R2828","pred":"pobj","subj":"T9990","obj":"T9988"},{"id":"R2829","pred":"nmod","subj":"T9991","obj":"T9990"},{"id":"R2830","pred":"punct","subj":"T9992","obj":"T9991"},{"id":"R2831","pred":"nummod","subj":"T9993","obj":"T9991"},{"id":"R2832","pred":"punct","subj":"T9994","obj":"T9995"},{"id":"R2833","pred":"parataxis","subj":"T9995","obj":"T9991"},{"id":"R2834","pred":"nummod","subj":"T9996","obj":"T9995"},{"id":"R2835","pred":"punct","subj":"T9997","obj":"T9996"},{"id":"R2836","pred":"punct","subj":"T9998","obj":"T9995"},{"id":"R2837","pred":"punct","subj":"T9999","obj":"T9995"},{"id":"R2838","pred":"nummod","subj":"T10000","obj":"T9995"},{"id":"R2839","pred":"punct","subj":"T10001","obj":"T9995"},{"id":"R2840","pred":"punct","subj":"T10002","obj":"T9995"},{"id":"R2841","pred":"cc","subj":"T10003","obj":"T9991"},{"id":"R2842","pred":"conj","subj":"T10004","obj":"T9991"},{"id":"R2843","pred":"punct","subj":"T10005","obj":"T10004"},{"id":"R2844","pred":"nummod","subj":"T10006","obj":"T10004"},{"id":"R2845","pred":"punct","subj":"T10007","obj":"T10008"},{"id":"R2846","pred":"parataxis","subj":"T10008","obj":"T10004"},{"id":"R2847","pred":"nummod","subj":"T10009","obj":"T10008"},{"id":"R2848","pred":"punct","subj":"T10010","obj":"T10009"},{"id":"R2849","pred":"punct","subj":"T10011","obj":"T10008"},{"id":"R2850","pred":"punct","subj":"T10012","obj":"T10008"},{"id":"R2851","pred":"nummod","subj":"T10013","obj":"T10008"},{"id":"R2852","pred":"punct","subj":"T10014","obj":"T10008"},{"id":"R2853","pred":"punct","subj":"T10015","obj":"T10008"},{"id":"R2854","pred":"punct","subj":"T10016","obj":"T9986"},{"id":"R2855","pred":"det","subj":"T10018","obj":"T10019"},{"id":"R2856","pred":"nsubj","subj":"T10019","obj":"T10020"},{"id":"R2857","pred":"prep","subj":"T10021","obj":"T10020"},{"id":"R2858","pred":"det","subj":"T10022","obj":"T10023"},{"id":"R2859","pred":"pobj","subj":"T10023","obj":"T10021"},{"id":"R2860","pred":"nummod","subj":"T10024","obj":"T10025"},{"id":"R2861","pred":"compound","subj":"T10025","obj":"T10023"},{"id":"R2862","pred":"prep","subj":"T10026","obj":"T10023"},{"id":"R2863","pred":"det","subj":"T10027","obj":"T10028"},{"id":"R2864","pred":"pobj","subj":"T10028","obj":"T10026"},{"id":"R2865","pred":"amod","subj":"T10029","obj":"T10030"},{"id":"R2866","pred":"compound","subj":"T10030","obj":"T10028"},{"id":"R2867","pred":"punct","subj":"T10031","obj":"T10030"},{"id":"R2868","pred":"punct","subj":"T10032","obj":"T10023"},{"id":"R2869","pred":"det","subj":"T10033","obj":"T10034"},{"id":"R2870","pred":"conj","subj":"T10034","obj":"T10023"},{"id":"R2871","pred":"nummod","subj":"T10035","obj":"T10036"},{"id":"R2872","pred":"compound","subj":"T10036","obj":"T10034"},{"id":"R2873","pred":"prep","subj":"T10037","obj":"T10034"},{"id":"R2874","pred":"det","subj":"T10038","obj":"T10039"},{"id":"R2875","pred":"pobj","subj":"T10039","obj":"T10037"},{"id":"R2876","pred":"compound","subj":"T10040","obj":"T10041"},{"id":"R2877","pred":"compound","subj":"T10041","obj":"T10039"},{"id":"R2878","pred":"punct","subj":"T10042","obj":"T10041"},{"id":"R2879","pred":"punct","subj":"T10043","obj":"T10034"},{"id":"R2880","pred":"cc","subj":"T10044","obj":"T10034"},{"id":"R2881","pred":"det","subj":"T10045","obj":"T10046"},{"id":"R2882","pred":"conj","subj":"T10046","obj":"T10034"},{"id":"R2883","pred":"nummod","subj":"T10047","obj":"T10048"},{"id":"R2884","pred":"compound","subj":"T10048","obj":"T10046"},{"id":"R2885","pred":"prep","subj":"T10049","obj":"T10046"},{"id":"R2886","pred":"det","subj":"T10050","obj":"T10051"},{"id":"R2887","pred":"pobj","subj":"T10051","obj":"T10049"},{"id":"R2888","pred":"compound","subj":"T10052","obj":"T10051"},{"id":"R2889","pred":"punct","subj":"T10053","obj":"T10020"}],"text":"Southern blot screening for homologous recombination\nES cells genomic DNA was extracted with PUREGENE™ Cell Lysis Solution (Gentra systems). For 5' Southern blot analysis, genomic DNA was first digested with PstI, then separated on an 0.8% agarose gel and transferred to a nylon membrane as described [20]. A 560 bp 5' probe was amplified using the ESG1S5 (5'- GATGGTGGTGGTGACTCAGAG -3') and ESG1AS5 as (5'- CCTCCATTGCCTCTATATCAG -3') primers. The probe specifically labeled an 18 kbp band from the wild-type locus, a 15 kbp band from the β-geo locus, and a 12 kbp band from the HygR locus. Genomic DNA was also digested with SpeI for 3' Southern blot analysis. A 1,010 bp 3' probe was amplified with the pH34U-8000 (5'- CCAACCAGCCAGAGTTTCAGTTAT -3') and pH34L-9000 (5'-GATAAGCTGCTGCCAAAAGACAAG -3') primers. The probe hybridized to an 11.5 kbp band from the wild-type locus, a 12.5 kbp band from the β-geo locus, and a 9.5 kbp band from the HygR locus."}