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PMC:1359074 / 663-875
Annnotations
pmc-enju-pas
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bionlp-st-ge-2016-test-proteins
{"project":"bionlp-st-ge-2016-test-proteins","denotations":[{"id":"T153","span":{"begin":25,"end":27},"obj":"Protein"},{"id":"T154","span":{"begin":67,"end":71},"obj":"Protein"},{"id":"T155","span":{"begin":202,"end":206},"obj":"Protein"}],"namespaces":[{"prefix":"_base","uri":"http://bionlp.dbcls.jp/ontology/ge.owl#"}],"text":"–base pair region of the ɛy proximal promoter that is critical for Sox6 mediated repression. Electrophoretic mobility shift assay (EMSA) and chromatin immunoprecipitation (ChIP) assays demonstrate that Sox6 acts "}
bionlp-st-ge-2016-uniprot
{"project":"bionlp-st-ge-2016-uniprot","denotations":[{"id":"T477","span":{"begin":67,"end":71},"obj":"http://www.uniprot.org/uniprot/P35712"},{"id":"T478","span":{"begin":202,"end":206},"obj":"http://www.uniprot.org/uniprot/P35712"}],"namespaces":[{"prefix":"_base","uri":"http://www.uniprot.org/uniprot/"}],"text":"–base pair region of the ɛy proximal promoter that is critical for Sox6 mediated repression. Electrophoretic mobility shift assay (EMSA) and chromatin immunoprecipitation (ChIP) assays demonstrate that Sox6 acts "}
GO-CC
{"project":"GO-CC","denotations":[{"id":"T178","span":{"begin":141,"end":150},"obj":"http://purl.obolibrary.org/obo/GO_0000785"}],"text":"–base pair region of the ɛy proximal promoter that is critical for Sox6 mediated repression. Electrophoretic mobility shift assay (EMSA) and chromatin immunoprecipitation (ChIP) assays demonstrate that Sox6 acts "}
simple1
{"project":"simple1","denotations":[{"id":"T240","span":{"begin":202,"end":206},"obj":"Protein"},{"id":"T239","span":{"begin":67,"end":71},"obj":"Protein"},{"id":"T238","span":{"begin":25,"end":27},"obj":"Protein"}],"text":"–base pair region of the ɛy proximal promoter that is critical for Sox6 mediated repression. Electrophoretic mobility shift assay (EMSA) and chromatin immunoprecipitation (ChIP) assays demonstrate that Sox6 acts "}
BioNLP16_DUT
{"project":"BioNLP16_DUT","denotations":[{"id":"T883","span":{"begin":25,"end":27},"obj":"Protein"},{"id":"T884","span":{"begin":67,"end":71},"obj":"Protein"},{"id":"T885","span":{"begin":202,"end":206},"obj":"Protein"},{"id":"T898","span":{"begin":81,"end":91},"obj":"Negative_regulation"}],"relations":[{"id":"R588","pred":"themeOf","subj":"T884","obj":"T898"}],"text":"–base pair region of the ɛy proximal promoter that is critical for Sox6 mediated repression. Electrophoretic mobility shift assay (EMSA) and chromatin immunoprecipitation (ChIP) assays demonstrate that Sox6 acts "}
BioNLP16_Messiy
{"project":"BioNLP16_Messiy","denotations":[{"id":"T491","span":{"begin":25,"end":27},"obj":"Protein"},{"id":"T492","span":{"begin":67,"end":71},"obj":"Protein"},{"id":"T493","span":{"begin":202,"end":206},"obj":"Protein"},{"id":"T507","span":{"begin":72,"end":80},"obj":"Positive_regulation"},{"id":"T508","span":{"begin":81,"end":91},"obj":"Negative_regulation"}],"relations":[{"id":"R449","pred":"themeOf","subj":"T492","obj":"T508"},{"id":"R459","pred":"themeOf","subj":"T508","obj":"T507"}],"text":"–base pair region of the ɛy proximal promoter that is critical for Sox6 mediated repression. Electrophoretic mobility shift assay (EMSA) and chromatin immunoprecipitation (ChIP) assays demonstrate that Sox6 acts "}
DLUT931
{"project":"DLUT931","denotations":[{"id":"T522","span":{"begin":25,"end":27},"obj":"Protein"},{"id":"T523","span":{"begin":67,"end":71},"obj":"Protein"},{"id":"T524","span":{"begin":202,"end":206},"obj":"Protein"}],"text":"–base pair region of the ɛy proximal promoter that is critical for Sox6 mediated repression. Electrophoretic mobility shift assay (EMSA) and chromatin immunoprecipitation (ChIP) assays demonstrate that Sox6 acts "}
bionlp-st-ge-2016-test-ihmc
{"project":"bionlp-st-ge-2016-test-ihmc","denotations":[{"id":"T873","span":{"begin":63,"end":91},"obj":"Regulation"},{"id":"T866","span":{"begin":25,"end":27},"obj":"Protein"},{"id":"T855","span":{"begin":141,"end":150},"obj":"Entity"},{"id":"T859","span":{"begin":18,"end":45},"obj":"Entity"},{"id":"T861","span":{"begin":63,"end":91},"obj":"Protein"},{"id":"T862","span":{"begin":202,"end":206},"obj":"Protein"}],"relations":[{"id":"R582","pred":"partOf","subj":"T859","obj":"T866"},{"id":"R584","pred":"themeOf","subj":"T861","obj":"T873"}],"text":"–base pair region of the ɛy proximal promoter that is critical for Sox6 mediated repression. Electrophoretic mobility shift assay (EMSA) and chromatin immunoprecipitation (ChIP) assays demonstrate that Sox6 acts "}
bionlp-st-ge-2016-spacy-parsed
{"project":"bionlp-st-ge-2016-spacy-parsed","denotations":[{"id":"T712","span":{"begin":207,"end":211},"obj":"NNS"},{"id":"T711","span":{"begin":202,"end":206},"obj":"JJ"},{"id":"T710","span":{"begin":197,"end":201},"obj":"IN"},{"id":"T709","span":{"begin":185,"end":196},"obj":"VBP"},{"id":"T708","span":{"begin":178,"end":184},"obj":"NNS"},{"id":"T707","span":{"begin":176,"end":177},"obj":"-RRB-"},{"id":"T706","span":{"begin":172,"end":176},"obj":"NNP"},{"id":"T705","span":{"begin":171,"end":172},"obj":"-LRB-"},{"id":"T704","span":{"begin":151,"end":170},"obj":"NN"},{"id":"T703","span":{"begin":141,"end":150},"obj":"NN"},{"id":"T702","span":{"begin":137,"end":140},"obj":"CC"},{"id":"T701","span":{"begin":135,"end":136},"obj":"-RRB-"},{"id":"T700","span":{"begin":131,"end":135},"obj":"NNP"},{"id":"T699","span":{"begin":130,"end":131},"obj":"-LRB-"},{"id":"T698","span":{"begin":124,"end":129},"obj":"NN"},{"id":"T697","span":{"begin":118,"end":123},"obj":"NN"},{"id":"T696","span":{"begin":109,"end":117},"obj":"NN"},{"id":"T695","span":{"begin":93,"end":108},"obj":"JJ"},{"id":"T694","span":{"begin":91,"end":92},"obj":"."},{"id":"T693","span":{"begin":81,"end":91},"obj":"NN"},{"id":"T692","span":{"begin":72,"end":80},"obj":"VBN"},{"id":"T691","span":{"begin":67,"end":71},"obj":"JJ"},{"id":"T690","span":{"begin":63,"end":66},"obj":"IN"},{"id":"T689","span":{"begin":54,"end":62},"obj":"JJ"},{"id":"T688","span":{"begin":51,"end":53},"obj":"VBZ"},{"id":"T687","span":{"begin":46,"end":50},"obj":"WDT"},{"id":"T686","span":{"begin":37,"end":45},"obj":"NN"},{"id":"T685","span":{"begin":28,"end":36},"obj":"JJ"},{"id":"T684","span":{"begin":25,"end":27},"obj":"JJ"},{"id":"T683","span":{"begin":21,"end":24},"obj":"DT"},{"id":"T682","span":{"begin":18,"end":20},"obj":"IN"},{"id":"T681","span":{"begin":11,"end":17},"obj":"NN"},{"id":"T680","span":{"begin":6,"end":10},"obj":"NN"},{"id":"T679","span":{"begin":1,"end":5},"obj":"JJ"}],"relations":[{"id":"R375","pred":"compound","subj":"T679","obj":"T681"},{"id":"R376","pred":"compound","subj":"T680","obj":"T681"},{"id":"R378","pred":"prep","subj":"T682","obj":"T681"},{"id":"R379","pred":"det","subj":"T683","obj":"T686"},{"id":"R380","pred":"amod","subj":"T684","obj":"T686"},{"id":"R381","pred":"amod","subj":"T685","obj":"T686"},{"id":"R382","pred":"pobj","subj":"T686","obj":"T682"},{"id":"R383","pred":"nsubj","subj":"T687","obj":"T688"},{"id":"R384","pred":"relcl","subj":"T688","obj":"T686"},{"id":"R385","pred":"acomp","subj":"T689","obj":"T688"},{"id":"R386","pred":"prep","subj":"T690","obj":"T689"},{"id":"R387","pred":"amod","subj":"T691","obj":"T693"},{"id":"R388","pred":"amod","subj":"T692","obj":"T693"},{"id":"R389","pred":"pobj","subj":"T693","obj":"T690"},{"id":"R391","pred":"amod","subj":"T695","obj":"T698"},{"id":"R392","pred":"compound","subj":"T696","obj":"T698"},{"id":"R393","pred":"compound","subj":"T697","obj":"T698"},{"id":"R394","pred":"nmod","subj":"T698","obj":"T708"},{"id":"R395","pred":"punct","subj":"T699","obj":"T700"},{"id":"R396","pred":"appos","subj":"T700","obj":"T698"},{"id":"R397","pred":"punct","subj":"T701","obj":"T700"},{"id":"R398","pred":"cc","subj":"T702","obj":"T698"},{"id":"R399","pred":"compound","subj":"T703","obj":"T704"},{"id":"R400","pred":"conj","subj":"T704","obj":"T698"},{"id":"R401","pred":"punct","subj":"T705","obj":"T704"},{"id":"R402","pred":"appos","subj":"T706","obj":"T704"},{"id":"R403","pred":"punct","subj":"T707","obj":"T704"},{"id":"R404","pred":"nsubj","subj":"T708","obj":"T709"},{"id":"R405","pred":"ROOT","subj":"T709","obj":"T709"},{"id":"R407","pred":"amod","subj":"T711","obj":"T712"}],"text":"–base pair region of the ɛy proximal promoter that is critical for Sox6 mediated repression. Electrophoretic mobility shift assay (EMSA) and chromatin immunoprecipitation (ChIP) assays demonstrate that Sox6 acts "}
bionlp-st-ge-2016-test-tees
{"project":"bionlp-st-ge-2016-test-tees","denotations":[{"id":"T216","span":{"begin":202,"end":206},"obj":"Protein"},{"id":"T215","span":{"begin":67,"end":71},"obj":"Protein"}],"text":"–base pair region of the ɛy proximal promoter that is critical for Sox6 mediated repression. Electrophoretic mobility shift assay (EMSA) and chromatin immunoprecipitation (ChIP) assays demonstrate that Sox6 acts "}
testone
{"project":"testone","denotations":[{"id":"T27","span":{"begin":25,"end":27},"obj":"Protein"},{"id":"T28","span":{"begin":67,"end":71},"obj":"Protein"},{"id":"T29","span":{"begin":202,"end":206},"obj":"Protein"}],"text":"–base pair region of the ɛy proximal promoter that is critical for Sox6 mediated repression. Electrophoretic mobility shift assay (EMSA) and chromatin immunoprecipitation (ChIP) assays demonstrate that Sox6 acts "}
test3
{"project":"test3","denotations":[{"id":"T52","span":{"begin":25,"end":27},"obj":"Protein"},{"id":"T53","span":{"begin":67,"end":71},"obj":"Protein"},{"id":"T54","span":{"begin":202,"end":206},"obj":"Protein"},{"id":"T73","span":{"begin":25,"end":27},"obj":"Protein"},{"id":"T74","span":{"begin":67,"end":71},"obj":"Protein"},{"id":"T75","span":{"begin":202,"end":206},"obj":"Protein"}],"relations":[{"id":"R13","pred":"themeOf","subj":"T74","obj":"T73"}],"text":"–base pair region of the ɛy proximal promoter that is critical for Sox6 mediated repression. Electrophoretic mobility shift assay (EMSA) and chromatin immunoprecipitation (ChIP) assays demonstrate that Sox6 acts "}