PMC:1359074 / 663-875
Annnotations
pmc-enju-pas
| Id | Subject | Object | Predicate | Lexical cue |
|---|---|---|---|---|
| T384 | 207-211 | VB | denotes | acts |
| T383 | 202-206 | NN | denotes | Sox6 |
| T382 | 197-201 | IN | denotes | that |
| T381 | 185-196 | VB | denotes | demonstrate |
| T380 | 178-184 | NN | denotes | assays |
| T379 | 176-177 | -RRB- | denotes | ) |
| T378 | 172-176 | NN | denotes | ChIP |
| T377 | 171-172 | -LRB- | denotes | ( |
| T376 | 151-170 | NN | denotes | immunoprecipitation |
| T375 | 141-150 | NN | denotes | chromatin |
| T374 | 137-140 | CC | denotes | and |
| T373 | 135-136 | -RRB- | denotes | ) |
| T372 | 131-135 | NN | denotes | EMSA |
| T371 | 130-131 | -LRB- | denotes | ( |
| T370 | 124-129 | NN | denotes | assay |
| T369 | 118-123 | NN | denotes | shift |
| T368 | 109-117 | NN | denotes | mobility |
| T367 | 93-108 | JJ | denotes | Electrophoretic |
| T366 | 81-91 | NN | denotes | repression |
| T365 | 72-80 | VB | denotes | mediated |
| T364 | 67-71 | NN | denotes | Sox6 |
| T363 | 63-66 | IN | denotes | for |
| T362 | 54-62 | JJ | denotes | critical |
| T361 | 51-53 | VB | denotes | is |
| T360 | 46-50 | WDT | denotes | that |
| T359 | 37-45 | NN | denotes | promoter |
| T358 | 28-36 | JJ | denotes | proximal |
| T357 | 25-27 | JJ | denotes | ɛy |
| T356 | 21-24 | DT | denotes | the |
| T355 | 18-20 | IN | denotes | of |
| T354 | 11-17 | NN | denotes | region |
| T353 | 6-10 | NN | denotes | pair |
| R146 | T354 | T353 | arg1Of | region,pair |
| R147 | T354 | T355 | arg1Of | region,of |
| R148 | T359 | T355 | arg2Of | promoter,of |
| R149 | T359 | T356 | arg1Of | promoter,the |
| R150 | T359 | T357 | arg1Of | promoter,ɛy |
| R151 | T359 | T358 | arg1Of | promoter,proximal |
| R152 | T359 | T360 | arg1Of | promoter,that |
| R153 | T359 | T361 | arg1Of | promoter,is |
| R154 | T359 | T362 | arg1Of | promoter,critical |
| R155 | T362 | T361 | arg2Of | critical,is |
| R156 | T362 | T363 | arg1Of | critical,for |
| R157 | T366 | T363 | arg2Of | repression,for |
| R158 | T366 | T364 | arg1Of | repression,Sox6 |
| R159 | T366 | T365 | arg2Of | repression,mediated |
| R160 | T370 | T367 | arg1Of | assay,Electrophoretic |
| R161 | T370 | T368 | arg1Of | assay,mobility |
| R162 | T370 | T369 | arg1Of | assay,shift |
| R163 | T370 | T371 | arg1Of | assay,( |
| R164 | T370 | T374 | arg1Of | assay,and |
| R165 | T372 | T371 | arg2Of | EMSA,( |
| R166 | T373 | T371 | arg3Of | ),( |
| R167 | T374 | T381 | arg1Of | and,demonstrate |
| R168 | T378 | T377 | arg2Of | ChIP,( |
| R169 | T379 | T377 | arg3Of | ),( |
| R170 | T380 | T374 | arg2Of | assays,and |
| R171 | T380 | T375 | arg1Of | assays,chromatin |
| R172 | T380 | T376 | arg1Of | assays,immunoprecipitation |
| R173 | T380 | T377 | arg1Of | assays,( |
| R174 | T383 | T384 | arg1Of | Sox6,acts |
| R175 | T384 | T381 | arg2Of | acts,demonstrate |
| R176 | T384 | T382 | arg1Of | acts,that |
bionlp-st-ge-2016-test-proteins
| Id | Subject | Object | Predicate | Lexical cue |
|---|---|---|---|---|
| T153 | 25-27 | Protein | denotes | ɛy |
| T154 | 67-71 | Protein | denotes | Sox6 |
| T155 | 202-206 | Protein | denotes | Sox6 |
bionlp-st-ge-2016-uniprot
| Id | Subject | Object | Predicate | Lexical cue |
|---|---|---|---|---|
| T477 | 67-71 | http://www.uniprot.org/uniprot/P35712 | denotes | Sox6 |
| T478 | 202-206 | http://www.uniprot.org/uniprot/P35712 | denotes | Sox6 |
GO-CC
| Id | Subject | Object | Predicate | Lexical cue |
|---|---|---|---|---|
| T178 | 141-150 | http://purl.obolibrary.org/obo/GO_0000785 | denotes | chromatin |
simple1
| Id | Subject | Object | Predicate | Lexical cue |
|---|---|---|---|---|
| T240 | 202-206 | Protein | denotes | Sox6 |
| T239 | 67-71 | Protein | denotes | Sox6 |
| T238 | 25-27 | Protein | denotes | ɛy |
BioNLP16_DUT
| Id | Subject | Object | Predicate | Lexical cue |
|---|---|---|---|---|
| T883 | 25-27 | Protein | denotes | ɛy |
| T884 | 67-71 | Protein | denotes | Sox6 |
| T885 | 202-206 | Protein | denotes | Sox6 |
| T898 | 81-91 | Negative_regulation | denotes | repression |
| R588 | T884 | T898 | themeOf | Sox6,repression |
BioNLP16_Messiy
| Id | Subject | Object | Predicate | Lexical cue |
|---|---|---|---|---|
| T491 | 25-27 | Protein | denotes | ɛy |
| T492 | 67-71 | Protein | denotes | Sox6 |
| T493 | 202-206 | Protein | denotes | Sox6 |
| T507 | 72-80 | Positive_regulation | denotes | mediated |
| T508 | 81-91 | Negative_regulation | denotes | repression |
| R449 | T492 | T508 | themeOf | Sox6,repression |
| R459 | T508 | T507 | themeOf | repression,mediated |
DLUT931
| Id | Subject | Object | Predicate | Lexical cue |
|---|---|---|---|---|
| T522 | 25-27 | Protein | denotes | ɛy |
| T523 | 67-71 | Protein | denotes | Sox6 |
| T524 | 202-206 | Protein | denotes | Sox6 |
bionlp-st-ge-2016-test-ihmc
| Id | Subject | Object | Predicate | Lexical cue |
|---|---|---|---|---|
| T873 | 63-91 | Regulation | denotes | for Sox6 mediated repression |
| T866 | 25-27 | Protein | denotes | ɛy |
| T855 | 141-150 | Entity | denotes | chromatin |
| T859 | 18-45 | Entity | denotes | of the ɛy proximal promoter |
| T861 | 63-91 | Protein | denotes | for Sox6 mediated repression |
| T862 | 202-206 | Protein | denotes | Sox6 |
| R582 | T859 | T866 | partOf | of the ɛy proximal promoter,ɛy |
| R584 | T861 | T873 | themeOf | for Sox6 mediated repression,for Sox6 mediated repression |
bionlp-st-ge-2016-spacy-parsed
| Id | Subject | Object | Predicate | Lexical cue |
|---|---|---|---|---|
| T712 | 207-211 | NNS | denotes | acts |
| T711 | 202-206 | JJ | denotes | Sox6 |
| T710 | 197-201 | IN | denotes | that |
| T709 | 185-196 | VBP | denotes | demonstrate |
| T708 | 178-184 | NNS | denotes | assays |
| T707 | 176-177 | -RRB- | denotes | ) |
| T706 | 172-176 | NNP | denotes | ChIP |
| T705 | 171-172 | -LRB- | denotes | ( |
| T704 | 151-170 | NN | denotes | immunoprecipitation |
| T703 | 141-150 | NN | denotes | chromatin |
| T702 | 137-140 | CC | denotes | and |
| T701 | 135-136 | -RRB- | denotes | ) |
| T700 | 131-135 | NNP | denotes | EMSA |
| T699 | 130-131 | -LRB- | denotes | ( |
| T698 | 124-129 | NN | denotes | assay |
| T697 | 118-123 | NN | denotes | shift |
| T696 | 109-117 | NN | denotes | mobility |
| T695 | 93-108 | JJ | denotes | Electrophoretic |
| T694 | 91-92 | . | denotes | . |
| T693 | 81-91 | NN | denotes | repression |
| T692 | 72-80 | VBN | denotes | mediated |
| T691 | 67-71 | JJ | denotes | Sox6 |
| T690 | 63-66 | IN | denotes | for |
| T689 | 54-62 | JJ | denotes | critical |
| T688 | 51-53 | VBZ | denotes | is |
| T687 | 46-50 | WDT | denotes | that |
| T686 | 37-45 | NN | denotes | promoter |
| T685 | 28-36 | JJ | denotes | proximal |
| T684 | 25-27 | JJ | denotes | ɛy |
| T683 | 21-24 | DT | denotes | the |
| T682 | 18-20 | IN | denotes | of |
| T681 | 11-17 | NN | denotes | region |
| T680 | 6-10 | NN | denotes | pair |
| T679 | 1-5 | JJ | denotes | base |
| R375 | T679 | T681 | compound | base,region |
| R376 | T680 | T681 | compound | pair,region |
| R378 | T682 | T681 | prep | of,region |
| R379 | T683 | T686 | det | the,promoter |
| R380 | T684 | T686 | amod | ɛy,promoter |
| R381 | T685 | T686 | amod | proximal,promoter |
| R382 | T686 | T682 | pobj | promoter,of |
| R383 | T687 | T688 | nsubj | that,is |
| R384 | T688 | T686 | relcl | is,promoter |
| R385 | T689 | T688 | acomp | critical,is |
| R386 | T690 | T689 | prep | for,critical |
| R387 | T691 | T693 | amod | Sox6,repression |
| R388 | T692 | T693 | amod | mediated,repression |
| R389 | T693 | T690 | pobj | repression,for |
| R391 | T695 | T698 | amod | Electrophoretic,assay |
| R392 | T696 | T698 | compound | mobility,assay |
| R393 | T697 | T698 | compound | shift,assay |
| R394 | T698 | T708 | nmod | assay,assays |
| R395 | T699 | T700 | punct | (,EMSA |
| R396 | T700 | T698 | appos | EMSA,assay |
| R397 | T701 | T700 | punct | ),EMSA |
| R398 | T702 | T698 | cc | and,assay |
| R399 | T703 | T704 | compound | chromatin,immunoprecipitation |
| R400 | T704 | T698 | conj | immunoprecipitation,assay |
| R401 | T705 | T704 | punct | (,immunoprecipitation |
| R402 | T706 | T704 | appos | ChIP,immunoprecipitation |
| R403 | T707 | T704 | punct | ),immunoprecipitation |
| R404 | T708 | T709 | nsubj | assays,demonstrate |
| R405 | T709 | T709 | ROOT | demonstrate,demonstrate |
| R407 | T711 | T712 | amod | Sox6,acts |
bionlp-st-ge-2016-test-tees
| Id | Subject | Object | Predicate | Lexical cue |
|---|---|---|---|---|
| T216 | 202-206 | Protein | denotes | Sox6 |
| T215 | 67-71 | Protein | denotes | Sox6 |
testone
| Id | Subject | Object | Predicate | Lexical cue |
|---|---|---|---|---|
| T27 | 25-27 | Protein | denotes | ɛy |
| T28 | 67-71 | Protein | denotes | Sox6 |
| T29 | 202-206 | Protein | denotes | Sox6 |
test3
| Id | Subject | Object | Predicate | Lexical cue |
|---|---|---|---|---|
| T52 | 25-27 | Protein | denotes | ɛy |
| T53 | 67-71 | Protein | denotes | Sox6 |
| T54 | 202-206 | Protein | denotes | Sox6 |
| T73 | 25-27 | Protein | denotes | ɛy |
| T74 | 67-71 | Protein | denotes | Sox6 |
| T75 | 202-206 | Protein | denotes | Sox6 |
| R13 | T74 | T73 | themeOf | Sox6,ɛy |