PMC:1359074 / 663-875 JSONTXT

{"target":"https://pubannotation.org/docs/sourcedb/PMC/sourceid/1359074","sourcedb":"PMC","sourceid":"1359074","source_url":"http://www.ncbi.nlm.nih.gov/pmc/1359074","text":"–base pair region of the ɛy proximal promoter that is critical for Sox6 mediated repression. Electrophoretic mobility shift assay (EMSA) and chromatin immunoprecipitation (ChIP) assays demonstrate that Sox6 acts ","tracks":[{"project":"pmc-enju-pas","denotations":[{"id":"T384","span":{"begin":207,"end":211},"obj":"VB"},{"id":"T383","span":{"begin":202,"end":206},"obj":"NN"},{"id":"T382","span":{"begin":197,"end":201},"obj":"IN"},{"id":"T381","span":{"begin":185,"end":196},"obj":"VB"},{"id":"T380","span":{"begin":178,"end":184},"obj":"NN"},{"id":"T379","span":{"begin":176,"end":177},"obj":"-RRB-"},{"id":"T378","span":{"begin":172,"end":176},"obj":"NN"},{"id":"T377","span":{"begin":171,"end":172},"obj":"-LRB-"},{"id":"T376","span":{"begin":151,"end":170},"obj":"NN"},{"id":"T375","span":{"begin":141,"end":150},"obj":"NN"},{"id":"T374","span":{"begin":137,"end":140},"obj":"CC"},{"id":"T373","span":{"begin":135,"end":136},"obj":"-RRB-"},{"id":"T372","span":{"begin":131,"end":135},"obj":"NN"},{"id":"T371","span":{"begin":130,"end":131},"obj":"-LRB-"},{"id":"T370","span":{"begin":124,"end":129},"obj":"NN"},{"id":"T369","span":{"begin":118,"end":123},"obj":"NN"},{"id":"T368","span":{"begin":109,"end":117},"obj":"NN"},{"id":"T367","span":{"begin":93,"end":108},"obj":"JJ"},{"id":"T366","span":{"begin":81,"end":91},"obj":"NN"},{"id":"T365","span":{"begin":72,"end":80},"obj":"VB"},{"id":"T364","span":{"begin":67,"end":71},"obj":"NN"},{"id":"T363","span":{"begin":63,"end":66},"obj":"IN"},{"id":"T362","span":{"begin":54,"end":62},"obj":"JJ"},{"id":"T361","span":{"begin":51,"end":53},"obj":"VB"},{"id":"T360","span":{"begin":46,"end":50},"obj":"WDT"},{"id":"T359","span":{"begin":37,"end":45},"obj":"NN"},{"id":"T358","span":{"begin":28,"end":36},"obj":"JJ"},{"id":"T357","span":{"begin":25,"end":27},"obj":"JJ"},{"id":"T356","span":{"begin":21,"end":24},"obj":"DT"},{"id":"T355","span":{"begin":18,"end":20},"obj":"IN"},{"id":"T354","span":{"begin":11,"end":17},"obj":"NN"},{"id":"T353","span":{"begin":6,"end":10},"obj":"NN"}],"relations":[{"id":"R146","pred":"arg1Of","subj":"T354","obj":"T353"},{"id":"R147","pred":"arg1Of","subj":"T354","obj":"T355"},{"id":"R148","pred":"arg2Of","subj":"T359","obj":"T355"},{"id":"R149","pred":"arg1Of","subj":"T359","obj":"T356"},{"id":"R150","pred":"arg1Of","subj":"T359","obj":"T357"},{"id":"R151","pred":"arg1Of","subj":"T359","obj":"T358"},{"id":"R152","pred":"arg1Of","subj":"T359","obj":"T360"},{"id":"R153","pred":"arg1Of","subj":"T359","obj":"T361"},{"id":"R154","pred":"arg1Of","subj":"T359","obj":"T362"},{"id":"R155","pred":"arg2Of","subj":"T362","obj":"T361"},{"id":"R156","pred":"arg1Of","subj":"T362","obj":"T363"},{"id":"R157","pred":"arg2Of","subj":"T366","obj":"T363"},{"id":"R158","pred":"arg1Of","subj":"T366","obj":"T364"},{"id":"R159","pred":"arg2Of","subj":"T366","obj":"T365"},{"id":"R160","pred":"arg1Of","subj":"T370","obj":"T367"},{"id":"R161","pred":"arg1Of","subj":"T370","obj":"T368"},{"id":"R162","pred":"arg1Of","subj":"T370","obj":"T369"},{"id":"R163","pred":"arg1Of","subj":"T370","obj":"T371"},{"id":"R164","pred":"arg1Of","subj":"T370","obj":"T374"},{"id":"R165","pred":"arg2Of","subj":"T372","obj":"T371"},{"id":"R166","pred":"arg3Of","subj":"T373","obj":"T371"},{"id":"R167","pred":"arg1Of","subj":"T374","obj":"T381"},{"id":"R168","pred":"arg2Of","subj":"T378","obj":"T377"},{"id":"R169","pred":"arg3Of","subj":"T379","obj":"T377"},{"id":"R170","pred":"arg2Of","subj":"T380","obj":"T374"},{"id":"R171","pred":"arg1Of","subj":"T380","obj":"T375"},{"id":"R172","pred":"arg1Of","subj":"T380","obj":"T376"},{"id":"R173","pred":"arg1Of","subj":"T380","obj":"T377"},{"id":"R174","pred":"arg1Of","subj":"T383","obj":"T384"},{"id":"R175","pred":"arg2Of","subj":"T384","obj":"T381"},{"id":"R176","pred":"arg1Of","subj":"T384","obj":"T382"}],"namespaces":[{"prefix":"_base","uri":"http://kmcs.nii.ac.jp/enju/"}],"attributes":[{"subj":"T384","pred":"source","obj":"pmc-enju-pas"},{"subj":"T383","pred":"source","obj":"pmc-enju-pas"},{"subj":"T382","pred":"source","obj":"pmc-enju-pas"},{"subj":"T381","pred":"source","obj":"pmc-enju-pas"},{"subj":"T380","pred":"source","obj":"pmc-enju-pas"},{"subj":"T379","pred":"source","obj":"pmc-enju-pas"},{"subj":"T378","pred":"source","obj":"pmc-enju-pas"},{"subj":"T377","pred":"source","obj":"pmc-enju-pas"},{"subj":"T376","pred":"source","obj":"pmc-enju-pas"},{"subj":"T375","pred":"source","obj":"pmc-enju-pas"},{"subj":"T374","pred":"source","obj":"pmc-enju-pas"},{"subj":"T373","pred":"source","obj":"pmc-enju-pas"},{"subj":"T372","pred":"source","obj":"pmc-enju-pas"},{"subj":"T371","pred":"source","obj":"pmc-enju-pas"},{"subj":"T370","pred":"source","obj":"pmc-enju-pas"},{"subj":"T369","pred":"source","obj":"pmc-enju-pas"},{"subj":"T368","pred":"source","obj":"pmc-enju-pas"},{"subj":"T367","pred":"source","obj":"pmc-enju-pas"},{"subj":"T366","pred":"source","obj":"pmc-enju-pas"},{"subj":"T365","pred":"source","obj":"pmc-enju-pas"},{"subj":"T364","pred":"source","obj":"pmc-enju-pas"},{"subj":"T363","pred":"source","obj":"pmc-enju-pas"},{"subj":"T362","pred":"source","obj":"pmc-enju-pas"},{"subj":"T361","pred":"source","obj":"pmc-enju-pas"},{"subj":"T360","pred":"source","obj":"pmc-enju-pas"},{"subj":"T359","pred":"source","obj":"pmc-enju-pas"},{"subj":"T358","pred":"source","obj":"pmc-enju-pas"},{"subj":"T357","pred":"source","obj":"pmc-enju-pas"},{"subj":"T356","pred":"source","obj":"pmc-enju-pas"},{"subj":"T355","pred":"source","obj":"pmc-enju-pas"},{"subj":"T354","pred":"source","obj":"pmc-enju-pas"},{"subj":"T353","pred":"source","obj":"pmc-enju-pas"}]},{"project":"bionlp-st-ge-2016-test-proteins","denotations":[{"id":"T153","span":{"begin":25,"end":27},"obj":"Protein"},{"id":"T154","span":{"begin":67,"end":71},"obj":"Protein"},{"id":"T155","span":{"begin":202,"end":206},"obj":"Protein"}],"namespaces":[{"prefix":"_base","uri":"http://bionlp.dbcls.jp/ontology/ge.owl#"}],"attributes":[{"subj":"T153","pred":"source","obj":"bionlp-st-ge-2016-test-proteins"},{"subj":"T154","pred":"source","obj":"bionlp-st-ge-2016-test-proteins"},{"subj":"T155","pred":"source","obj":"bionlp-st-ge-2016-test-proteins"}]},{"project":"bionlp-st-ge-2016-uniprot","denotations":[{"id":"T477","span":{"begin":67,"end":71},"obj":"http://www.uniprot.org/uniprot/P35712"},{"id":"T478","span":{"begin":202,"end":206},"obj":"http://www.uniprot.org/uniprot/P35712"}],"namespaces":[{"prefix":"_base","uri":"http://www.uniprot.org/uniprot/"}],"attributes":[{"subj":"T477","pred":"source","obj":"bionlp-st-ge-2016-uniprot"},{"subj":"T478","pred":"source","obj":"bionlp-st-ge-2016-uniprot"}]},{"project":"GO-CC","denotations":[{"id":"T178","span":{"begin":141,"end":150},"obj":"http://purl.obolibrary.org/obo/GO_0000785"}],"attributes":[{"subj":"T178","pred":"source","obj":"GO-CC"}]},{"project":"simple1","denotations":[{"id":"T240","span":{"begin":202,"end":206},"obj":"Protein"},{"id":"T239","span":{"begin":67,"end":71},"obj":"Protein"},{"id":"T238","span":{"begin":25,"end":27},"obj":"Protein"}],"attributes":[{"subj":"T240","pred":"source","obj":"simple1"},{"subj":"T239","pred":"source","obj":"simple1"},{"subj":"T238","pred":"source","obj":"simple1"}]},{"project":"BioNLP16_DUT","denotations":[{"id":"T883","span":{"begin":25,"end":27},"obj":"Protein"},{"id":"T884","span":{"begin":67,"end":71},"obj":"Protein"},{"id":"T885","span":{"begin":202,"end":206},"obj":"Protein"},{"id":"T898","span":{"begin":81,"end":91},"obj":"Negative_regulation"}],"relations":[{"id":"R588","pred":"themeOf","subj":"T884","obj":"T898"}],"attributes":[{"subj":"T883","pred":"source","obj":"BioNLP16_DUT"},{"subj":"T884","pred":"source","obj":"BioNLP16_DUT"},{"subj":"T885","pred":"source","obj":"BioNLP16_DUT"},{"subj":"T898","pred":"source","obj":"BioNLP16_DUT"}]},{"project":"BioNLP16_Messiy","denotations":[{"id":"T491","span":{"begin":25,"end":27},"obj":"Protein"},{"id":"T492","span":{"begin":67,"end":71},"obj":"Protein"},{"id":"T493","span":{"begin":202,"end":206},"obj":"Protein"},{"id":"T507","span":{"begin":72,"end":80},"obj":"Positive_regulation"},{"id":"T508","span":{"begin":81,"end":91},"obj":"Negative_regulation"}],"relations":[{"id":"R449","pred":"themeOf","subj":"T492","obj":"T508"},{"id":"R459","pred":"themeOf","subj":"T508","obj":"T507"}],"attributes":[{"subj":"T491","pred":"source","obj":"BioNLP16_Messiy"},{"subj":"T492","pred":"source","obj":"BioNLP16_Messiy"},{"subj":"T493","pred":"source","obj":"BioNLP16_Messiy"},{"subj":"T507","pred":"source","obj":"BioNLP16_Messiy"},{"subj":"T508","pred":"source","obj":"BioNLP16_Messiy"}]},{"project":"DLUT931","denotations":[{"id":"T522","span":{"begin":25,"end":27},"obj":"Protein"},{"id":"T523","span":{"begin":67,"end":71},"obj":"Protein"},{"id":"T524","span":{"begin":202,"end":206},"obj":"Protein"}],"attributes":[{"subj":"T522","pred":"source","obj":"DLUT931"},{"subj":"T523","pred":"source","obj":"DLUT931"},{"subj":"T524","pred":"source","obj":"DLUT931"}]},{"project":"bionlp-st-ge-2016-test-ihmc","denotations":[{"id":"T873","span":{"begin":63,"end":91},"obj":"Regulation"},{"id":"T866","span":{"begin":25,"end":27},"obj":"Protein"},{"id":"T855","span":{"begin":141,"end":150},"obj":"Entity"},{"id":"T859","span":{"begin":18,"end":45},"obj":"Entity"},{"id":"T861","span":{"begin":63,"end":91},"obj":"Protein"},{"id":"T862","span":{"begin":202,"end":206},"obj":"Protein"}],"relations":[{"id":"R582","pred":"partOf","subj":"T859","obj":"T866"},{"id":"R584","pred":"themeOf","subj":"T861","obj":"T873"}],"attributes":[{"subj":"T873","pred":"source","obj":"bionlp-st-ge-2016-test-ihmc"},{"subj":"T866","pred":"source","obj":"bionlp-st-ge-2016-test-ihmc"},{"subj":"T855","pred":"source","obj":"bionlp-st-ge-2016-test-ihmc"},{"subj":"T859","pred":"source","obj":"bionlp-st-ge-2016-test-ihmc"},{"subj":"T861","pred":"source","obj":"bionlp-st-ge-2016-test-ihmc"},{"subj":"T862","pred":"source","obj":"bionlp-st-ge-2016-test-ihmc"}]},{"project":"bionlp-st-ge-2016-spacy-parsed","denotations":[{"id":"T712","span":{"begin":207,"end":211},"obj":"NNS"},{"id":"T711","span":{"begin":202,"end":206},"obj":"JJ"},{"id":"T710","span":{"begin":197,"end":201},"obj":"IN"},{"id":"T709","span":{"begin":185,"end":196},"obj":"VBP"},{"id":"T708","span":{"begin":178,"end":184},"obj":"NNS"},{"id":"T707","span":{"begin":176,"end":177},"obj":"-RRB-"},{"id":"T706","span":{"begin":172,"end":176},"obj":"NNP"},{"id":"T705","span":{"begin":171,"end":172},"obj":"-LRB-"},{"id":"T704","span":{"begin":151,"end":170},"obj":"NN"},{"id":"T703","span":{"begin":141,"end":150},"obj":"NN"},{"id":"T702","span":{"begin":137,"end":140},"obj":"CC"},{"id":"T701","span":{"begin":135,"end":136},"obj":"-RRB-"},{"id":"T700","span":{"begin":131,"end":135},"obj":"NNP"},{"id":"T699","span":{"begin":130,"end":131},"obj":"-LRB-"},{"id":"T698","span":{"begin":124,"end":129},"obj":"NN"},{"id":"T697","span":{"begin":118,"end":123},"obj":"NN"},{"id":"T696","span":{"begin":109,"end":117},"obj":"NN"},{"id":"T695","span":{"begin":93,"end":108},"obj":"JJ"},{"id":"T694","span":{"begin":91,"end":92},"obj":"."},{"id":"T693","span":{"begin":81,"end":91},"obj":"NN"},{"id":"T692","span":{"begin":72,"end":80},"obj":"VBN"},{"id":"T691","span":{"begin":67,"end":71},"obj":"JJ"},{"id":"T690","span":{"begin":63,"end":66},"obj":"IN"},{"id":"T689","span":{"begin":54,"end":62},"obj":"JJ"},{"id":"T688","span":{"begin":51,"end":53},"obj":"VBZ"},{"id":"T687","span":{"begin":46,"end":50},"obj":"WDT"},{"id":"T686","span":{"begin":37,"end":45},"obj":"NN"},{"id":"T685","span":{"begin":28,"end":36},"obj":"JJ"},{"id":"T684","span":{"begin":25,"end":27},"obj":"JJ"},{"id":"T683","span":{"begin":21,"end":24},"obj":"DT"},{"id":"T682","span":{"begin":18,"end":20},"obj":"IN"},{"id":"T681","span":{"begin":11,"end":17},"obj":"NN"},{"id":"T680","span":{"begin":6,"end":10},"obj":"NN"},{"id":"T679","span":{"begin":1,"end":5},"obj":"JJ"}],"relations":[{"id":"R375","pred":"compound","subj":"T679","obj":"T681"},{"id":"R376","pred":"compound","subj":"T680","obj":"T681"},{"id":"R378","pred":"prep","subj":"T682","obj":"T681"},{"id":"R379","pred":"det","subj":"T683","obj":"T686"},{"id":"R380","pred":"amod","subj":"T684","obj":"T686"},{"id":"R381","pred":"amod","subj":"T685","obj":"T686"},{"id":"R382","pred":"pobj","subj":"T686","obj":"T682"},{"id":"R383","pred":"nsubj","subj":"T687","obj":"T688"},{"id":"R384","pred":"relcl","subj":"T688","obj":"T686"},{"id":"R385","pred":"acomp","subj":"T689","obj":"T688"},{"id":"R386","pred":"prep","subj":"T690","obj":"T689"},{"id":"R387","pred":"amod","subj":"T691","obj":"T693"},{"id":"R388","pred":"amod","subj":"T692","obj":"T693"},{"id":"R389","pred":"pobj","subj":"T693","obj":"T690"},{"id":"R391","pred":"amod","subj":"T695","obj":"T698"},{"id":"R392","pred":"compound","subj":"T696","obj":"T698"},{"id":"R393","pred":"compound","subj":"T697","obj":"T698"},{"id":"R394","pred":"nmod","subj":"T698","obj":"T708"},{"id":"R395","pred":"punct","subj":"T699","obj":"T700"},{"id":"R396","pred":"appos","subj":"T700","obj":"T698"},{"id":"R397","pred":"punct","subj":"T701","obj":"T700"},{"id":"R398","pred":"cc","subj":"T702","obj":"T698"},{"id":"R399","pred":"compound","subj":"T703","obj":"T704"},{"id":"R400","pred":"conj","subj":"T704","obj":"T698"},{"id":"R401","pred":"punct","subj":"T705","obj":"T704"},{"id":"R402","pred":"appos","subj":"T706","obj":"T704"},{"id":"R403","pred":"punct","subj":"T707","obj":"T704"},{"id":"R404","pred":"nsubj","subj":"T708","obj":"T709"},{"id":"R405","pred":"ROOT","subj":"T709","obj":"T709"},{"id":"R407","pred":"amod","subj":"T711","obj":"T712"}],"attributes":[{"subj":"T712","pred":"source","obj":"bionlp-st-ge-2016-spacy-parsed"},{"subj":"T711","pred":"source","obj":"bionlp-st-ge-2016-spacy-parsed"},{"subj":"T710","pred":"source","obj":"bionlp-st-ge-2016-spacy-parsed"},{"subj":"T709","pred":"source","obj":"bionlp-st-ge-2016-spacy-parsed"},{"subj":"T708","pred":"source","obj":"bionlp-st-ge-2016-spacy-parsed"},{"subj":"T707","pred":"source","obj":"bionlp-st-ge-2016-spacy-parsed"},{"subj":"T706","pred":"source","obj":"bionlp-st-ge-2016-spacy-parsed"},{"subj":"T705","pred":"source","obj":"bionlp-st-ge-2016-spacy-parsed"},{"subj":"T704","pred":"source","obj":"bionlp-st-ge-2016-spacy-parsed"},{"subj":"T703","pred":"source","obj":"bionlp-st-ge-2016-spacy-parsed"},{"subj":"T702","pred":"source","obj":"bionlp-st-ge-2016-spacy-parsed"},{"subj":"T701","pred":"source","obj":"bionlp-st-ge-2016-spacy-parsed"},{"subj":"T700","pred":"source","obj":"bionlp-st-ge-2016-spacy-parsed"},{"subj":"T699","pred":"source","obj":"bionlp-st-ge-2016-spacy-parsed"},{"subj":"T698","pred":"source","obj":"bionlp-st-ge-2016-spacy-parsed"},{"subj":"T697","pred":"source","obj":"bionlp-st-ge-2016-spacy-parsed"},{"subj":"T696","pred":"source","obj":"bionlp-st-ge-2016-spacy-parsed"},{"subj":"T695","pred":"source","obj":"bionlp-st-ge-2016-spacy-parsed"},{"subj":"T694","pred":"source","obj":"bionlp-st-ge-2016-spacy-parsed"},{"subj":"T693","pred":"source","obj":"bionlp-st-ge-2016-spacy-parsed"},{"subj":"T692","pred":"source","obj":"bionlp-st-ge-2016-spacy-parsed"},{"subj":"T691","pred":"source","obj":"bionlp-st-ge-2016-spacy-parsed"},{"subj":"T690","pred":"source","obj":"bionlp-st-ge-2016-spacy-parsed"},{"subj":"T689","pred":"source","obj":"bionlp-st-ge-2016-spacy-parsed"},{"subj":"T688","pred":"source","obj":"bionlp-st-ge-2016-spacy-parsed"},{"subj":"T687","pred":"source","obj":"bionlp-st-ge-2016-spacy-parsed"},{"subj":"T686","pred":"source","obj":"bionlp-st-ge-2016-spacy-parsed"},{"subj":"T685","pred":"source","obj":"bionlp-st-ge-2016-spacy-parsed"},{"subj":"T684","pred":"source","obj":"bionlp-st-ge-2016-spacy-parsed"},{"subj":"T683","pred":"source","obj":"bionlp-st-ge-2016-spacy-parsed"},{"subj":"T682","pred":"source","obj":"bionlp-st-ge-2016-spacy-parsed"},{"subj":"T681","pred":"source","obj":"bionlp-st-ge-2016-spacy-parsed"},{"subj":"T680","pred":"source","obj":"bionlp-st-ge-2016-spacy-parsed"},{"subj":"T679","pred":"source","obj":"bionlp-st-ge-2016-spacy-parsed"}]},{"project":"bionlp-st-ge-2016-test-tees","denotations":[{"id":"T216","span":{"begin":202,"end":206},"obj":"Protein"},{"id":"T215","span":{"begin":67,"end":71},"obj":"Protein"}],"attributes":[{"subj":"T216","pred":"source","obj":"bionlp-st-ge-2016-test-tees"},{"subj":"T215","pred":"source","obj":"bionlp-st-ge-2016-test-tees"}]},{"project":"testone","denotations":[{"id":"T27","span":{"begin":25,"end":27},"obj":"Protein"},{"id":"T28","span":{"begin":67,"end":71},"obj":"Protein"},{"id":"T29","span":{"begin":202,"end":206},"obj":"Protein"}],"attributes":[{"subj":"T27","pred":"source","obj":"testone"},{"subj":"T28","pred":"source","obj":"testone"},{"subj":"T29","pred":"source","obj":"testone"}]},{"project":"test3","denotations":[{"id":"T52","span":{"begin":25,"end":27},"obj":"Protein"},{"id":"T53","span":{"begin":67,"end":71},"obj":"Protein"},{"id":"T54","span":{"begin":202,"end":206},"obj":"Protein"},{"id":"T73","span":{"begin":25,"end":27},"obj":"Protein"},{"id":"T74","span":{"begin":67,"end":71},"obj":"Protein"},{"id":"T75","span":{"begin":202,"end":206},"obj":"Protein"}],"relations":[{"id":"R13","pred":"themeOf","subj":"T74","obj":"T73"}],"attributes":[{"subj":"T52","pred":"source","obj":"test3"},{"subj":"T53","pred":"source","obj":"test3"},{"subj":"T54","pred":"source","obj":"test3"},{"subj":"T73","pred":"source","obj":"test3"},{"subj":"T74","pred":"source","obj":"test3"},{"subj":"T75","pred":"source","obj":"test3"}]}],"config":{"attribute types":[{"pred":"source","value type":"selection","values":[{"id":"pmc-enju-pas","color":"#93ecda","default":true},{"id":"bionlp-st-ge-2016-test-proteins","color":"#ecc093"},{"id":"bionlp-st-ge-2016-uniprot","color":"#a693ec"},{"id":"GO-CC","color":"#99ec93"},{"id":"simple1","color":"#ec93b3"},{"id":"BioNLP16_DUT","color":"#93cdec"},{"id":"BioNLP16_Messiy","color":"#e7ec93"},{"id":"DLUT931","color":"#d793ec"},{"id":"bionlp-st-ge-2016-test-ihmc","color":"#93ecbd"},{"id":"bionlp-st-ge-2016-spacy-parsed","color":"#eca393"},{"id":"bionlp-st-ge-2016-test-tees","color":"#939dec"},{"id":"testone","color":"#b7ec93"},{"id":"test3","color":"#ec93d1"}]}]}}