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PMC:1253828 / 19545-20119 JSONTXT

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craft-sa-dev

Id Subject Object Predicate Lexical cue
T5834 0-3 IN denotes For
T5835 82-88 VBZ denotes exerts
T5836 4-7 DT denotes all
T5837 21-26 NNS denotes genes
T5838 8-11 NN denotes MTF
T5839 11-12 HYPH denotes -
T5840 12-13 CD denotes 1
T5841 14-20 NN denotes target
T5842 27-40 VBN denotes characterized
T5843 41-43 RB denotes so
T5844 44-47 RB denotes far
T5845 47-49 , denotes ,
T5846 49-53 JJ denotes such
T5847 54-56 IN denotes as
T5848 57-60 NN denotes Mt1
T5849 60-62 , denotes ,
T5850 62-65 NN denotes Mt2
T5851 66-69 CC denotes and
T5852 70-74 NN denotes Znt1
T5853 74-76 , denotes ,
T5854 76-79 NN denotes MTF
T5855 79-80 HYPH denotes -
T5856 80-81 CD denotes 1
T5857 89-92 PRP$ denotes its
T5858 120-128 NN denotes activity
T5859 93-108 JJ denotes transcriptional
T5860 109-119 NN denotes activation
T5861 129-132 IN denotes via
T5862 133-141 JJ denotes standard
T5863 146-155 NNS denotes sequences
T5864 142-145 NN denotes MRE
T5865 156-163 VBN denotes located
T5866 164-172 RB denotes proximal
T5867 173-175 IN denotes to
T5868 176-179 DT denotes the
T5869 194-199 NN denotes start
T5870 180-193 NN denotes transcription
T5871 200-201 -LRB- denotes (
T5872 210-212 CD denotes 19
T5873 201-202 CD denotes 4
T5874 202-203 , denotes ,
T5875 203-204 CD denotes 5
T5876 204-205 , denotes ,
T5877 205-206 CD denotes 8
T5878 206-207 , denotes ,
T5879 207-209 CD denotes 18
T5880 209-210 , denotes ,
T5881 212-213 -RRB- denotes )
T5882 213-214 . denotes .
T5883 214-419 sentence denotes Even a specific search for MTF-1 binding sites by selection from a pool of double-stranded oligonucleotides with random sequences yielded no new binding motif for MTF-1 in addition to the known MREs (34).
T5884 215-219 RB denotes Even
T5885 231-237 NN denotes search
T5886 220-221 DT denotes a
T5887 222-230 JJ denotes specific
T5888 345-352 VBD denotes yielded
T5889 238-241 IN denotes for
T5890 242-245 NN denotes MTF
T5891 256-261 NNS denotes sites
T5892 245-246 HYPH denotes -
T5893 246-247 CD denotes 1
T5894 248-255 NN denotes binding
T5895 262-264 IN denotes by
T5896 265-274 NN denotes selection
T5897 275-279 IN denotes from
T5898 280-281 DT denotes a
T5899 282-286 NN denotes pool
T5900 287-289 IN denotes of
T5901 290-296 JJ denotes double
T5902 297-305 VBN denotes stranded
T5903 296-297 HYPH denotes -
T5904 306-322 NNS denotes oligonucleotides
T5905 323-327 IN denotes with
T5906 328-334 JJ denotes random
T5907 335-344 NNS denotes sequences
T5908 353-355 DT denotes no
T5909 368-373 NN denotes motif
T5910 356-359 JJ denotes new
T5911 360-367 NN denotes binding
T5912 374-377 IN denotes for
T5913 378-381 NN denotes MTF
T5914 381-382 HYPH denotes -
T5915 382-383 CD denotes 1
T5916 384-386 IN denotes in
T5917 387-395 NN denotes addition
T5918 396-398 IN denotes to
T5919 399-402 DT denotes the
T5920 409-413 NNS denotes MREs
T5921 403-408 JJ denotes known
T5922 414-415 -LRB- denotes (
T5923 415-417 CD denotes 34
T5924 417-418 -RRB- denotes )
T5925 418-419 . denotes .
T5926 419-574 sentence denotes Thus, an MRE sequence is to date the only indication for a direct MTF-1 target gene, and four MRE-containing target gene candidates were further analyzed.
T5927 420-424 RB denotes Thus
T5928 442-444 VBZ denotes is
T5929 424-426 , denotes ,
T5930 426-428 DT denotes an
T5931 433-441 NN denotes sequence
T5932 429-432 NN denotes MRE
T5933 445-447 IN denotes to
T5934 448-452 NN denotes date
T5935 453-456 DT denotes the
T5936 462-472 NN denotes indication
T5937 457-461 JJ denotes only
T5938 473-476 IN denotes for
T5939 477-478 DT denotes a
T5940 499-503 NN denotes gene
T5941 479-485 JJ denotes direct
T5942 486-489 NN denotes MTF
T5943 489-490 HYPH denotes -
T5944 490-491 CD denotes 1
T5945 492-498 NN denotes target
T5946 503-505 , denotes ,
T5947 505-508 CC denotes and
T5948 509-513 CD denotes four
T5949 541-551 NNS denotes candidates
T5950 514-517 NN denotes MRE
T5951 518-528 VBG denotes containing
T5952 517-518 HYPH denotes -
T5953 529-535 NN denotes target
T5954 536-540 NN denotes gene
T5955 565-573 VBN denotes analyzed
T5956 552-556 VBD denotes were
T5957 557-564 RB denotes further
T5958 573-574 . denotes .
R3796 T5834 T5835 prep For,exerts
R3797 T5836 T5837 det all,genes
R3798 T5837 T5834 pobj genes,For
R3799 T5838 T5837 nmod MTF,genes
R3800 T5839 T5838 punct -,MTF
R3801 T5840 T5838 nummod 1,MTF
R3802 T5841 T5837 compound target,genes
R3803 T5842 T5837 acl characterized,genes
R3804 T5843 T5844 advmod so,far
R3805 T5844 T5842 advmod far,characterized
R3806 T5845 T5837 punct ", ",genes
R3807 T5846 T5847 amod such,as
R3808 T5847 T5837 prep as,genes
R3809 T5848 T5847 pobj Mt1,as
R3810 T5849 T5848 punct ", ",Mt1
R3811 T5850 T5848 conj Mt2,Mt1
R3812 T5851 T5850 cc and,Mt2
R3813 T5852 T5850 conj Znt1,Mt2
R3814 T5853 T5835 punct ", ",exerts
R3815 T5854 T5835 nsubj MTF,exerts
R3816 T5855 T5854 punct -,MTF
R3817 T5856 T5854 nummod 1,MTF
R3818 T5857 T5858 poss its,activity
R3819 T5858 T5835 dobj activity,exerts
R3820 T5859 T5860 amod transcriptional,activation
R3821 T5860 T5858 compound activation,activity
R3822 T5861 T5835 prep via,exerts
R3823 T5862 T5863 amod standard,sequences
R3824 T5863 T5861 pobj sequences,via
R3825 T5864 T5863 compound MRE,sequences
R3826 T5865 T5863 acl located,sequences
R3827 T5866 T5865 advmod proximal,located
R3828 T5867 T5866 prep to,proximal
R3829 T5868 T5869 det the,start
R3830 T5869 T5867 pobj start,to
R3831 T5870 T5869 compound transcription,start
R3832 T5871 T5872 punct (,19
R3833 T5872 T5835 parataxis 19,exerts
R3834 T5873 T5872 nummod 4,19
R3835 T5874 T5872 punct ",",19
R3836 T5875 T5872 nummod 5,19
R3837 T5876 T5872 punct ",",19
R3838 T5877 T5872 nummod 8,19
R3839 T5878 T5872 punct ",",19
R3840 T5879 T5872 nummod 18,19
R3841 T5880 T5872 punct ",",19
R3842 T5881 T5872 punct ),19
R3843 T5882 T5835 punct .,exerts
R3844 T5884 T5885 advmod Even,search
R3845 T5885 T5888 nsubj search,yielded
R3846 T5886 T5885 det a,search
R3847 T5887 T5885 amod specific,search
R3848 T5889 T5885 prep for,search
R3849 T5890 T5891 nmod MTF,sites
R3850 T5891 T5889 pobj sites,for
R3851 T5892 T5890 punct -,MTF
R3852 T5893 T5890 nummod 1,MTF
R3853 T5894 T5891 compound binding,sites
R3854 T5895 T5885 prep by,search
R3855 T5896 T5895 pobj selection,by
R3856 T5897 T5896 prep from,selection
R3857 T5898 T5899 det a,pool
R3858 T5899 T5897 pobj pool,from
R3859 T5900 T5899 prep of,pool
R3860 T5901 T5902 amod double,stranded
R3861 T5902 T5904 amod stranded,oligonucleotides
R3862 T5903 T5902 punct -,stranded
R3863 T5904 T5900 pobj oligonucleotides,of
R3864 T5905 T5904 prep with,oligonucleotides
R3865 T5906 T5907 amod random,sequences
R3866 T5907 T5905 pobj sequences,with
R3867 T5908 T5909 det no,motif
R3868 T5909 T5888 dobj motif,yielded
R3869 T5910 T5909 amod new,motif
R3870 T5911 T5909 compound binding,motif
R3871 T5912 T5909 prep for,motif
R3872 T5913 T5912 pobj MTF,for
R3873 T5914 T5913 punct -,MTF
R3874 T5915 T5913 nummod 1,MTF
R3875 T5916 T5909 prep in,motif
R3876 T5917 T5916 pobj addition,in
R3877 T5918 T5917 prep to,addition
R3878 T5919 T5920 det the,MREs
R3879 T5920 T5918 pobj MREs,to
R3880 T5921 T5920 amod known,MREs
R3881 T5922 T5923 punct (,34
R3882 T5923 T5888 parataxis 34,yielded
R3883 T5924 T5923 punct ),34
R3884 T5925 T5888 punct .,yielded
R3885 T5927 T5928 advmod Thus,is
R3886 T5929 T5928 punct ", ",is
R3887 T5930 T5931 det an,sequence
R3888 T5931 T5928 nsubj sequence,is
R3889 T5932 T5931 compound MRE,sequence
R3890 T5933 T5928 prep to,is
R3891 T5934 T5933 pobj date,to
R3892 T5935 T5936 det the,indication
R3893 T5936 T5928 attr indication,is
R3894 T5937 T5936 amod only,indication
R3895 T5938 T5936 prep for,indication
R3896 T5939 T5940 det a,gene
R3897 T5940 T5938 pobj gene,for
R3898 T5941 T5940 amod direct,gene
R3899 T5942 T5940 nmod MTF,gene
R3900 T5943 T5942 punct -,MTF
R3901 T5944 T5942 nummod 1,MTF
R3902 T5945 T5940 compound target,gene
R3903 T5946 T5928 punct ", ",is
R3904 T5947 T5928 cc and,is
R3905 T5948 T5949 nummod four,candidates
R3906 T5949 T5955 nsubjpass candidates,analyzed
R3907 T5950 T5951 npadvmod MRE,containing
R3908 T5951 T5949 amod containing,candidates
R3909 T5952 T5951 punct -,containing
R3910 T5953 T5949 compound target,candidates
R3911 T5954 T5949 compound gene,candidates
R3912 T5955 T5928 conj analyzed,is
R3913 T5956 T5955 auxpass were,analyzed
R3914 T5957 T5955 advmod further,analyzed
R3915 T5958 T5955 punct .,analyzed

2_test

Id Subject Object Predicate Lexical cue
16221973-8026472-77403425 201-202 8026472 denotes 4
16221973-8824273-77403426 203-204 8824273 denotes 5
16221973-6095286-77403427 205-206 6095286 denotes 8
16221973-10096565-77403428 207-209 10096565 denotes 18
16221973-10952993-77403429 210-212 10952993 denotes 19
16221973-15318811-77403430 415-417 15318811 denotes 34

craft-ca-core-dev

Below, discontinuous spans are shown in the chain model. You can change it to the bag model.

Id Subject Object Predicate Lexical cue
T5203 8-13 PR:000010717 denotes MTF-1
T5204 21-26 SO:0000704 denotes genes
T5205 57-60 PR:000010925 denotes Mt1
T5206 62-65 PR:000010704 denotes Mt2
T5207 70-74 PR:000015073 denotes Znt1
T5208 76-81 PR:000010717 denotes MTF-1
T5209 242-247 PR:000010717 denotes MTF-1
T5210 248-261 SO:0000409 denotes binding sites
T5211 290-322 SO:0000442 denotes double-stranded oligonucleotides
T5212 378-383 PR:000010717 denotes MTF-1
T5213 486-491 PR:000010717 denotes MTF-1
T5214 499-503 SO:0000704 denotes gene
T5215 536-540 SO:0000704 denotes gene

craft-ca-core-ex-dev

Below, discontinuous spans are shown in the chain model. You can change it to the bag model.

Id Subject Object Predicate Lexical cue
T5315 8-13 PR_EXT:000010717 denotes MTF-1
T5316 21-26 SO_EXT:0000704 denotes genes
T5317 57-60 PR_EXT:000010925 denotes Mt1
T5318 62-65 PR_EXT:000010704 denotes Mt2
T5319 70-74 PR_EXT:000015073 denotes Znt1
T5320 76-81 PR_EXT:000010717 denotes MTF-1
T5321 93-108 GO_EXT:transcription denotes transcriptional
T5322 146-155 SO_EXT:biological_sequence denotes sequences
T5323 180-199 GO_SO_EXT:transcriptional_start_entity_or_process denotes transcription start
T5324 242-247 PR_EXT:000010717 denotes MTF-1
T5325 248-255 CHEMINF_GO_EXT:chemical_binding_or_bond_formation denotes binding
T5326 248-261 SO_EXT:0000409 denotes binding sites
T5327 290-322 SO_EXT:0000442 denotes double-stranded oligonucleotides
T5328 306-322 CHEBI_SO_EXT:oligonucleotide denotes oligonucleotides
T5329 335-344 SO_EXT:biological_sequence denotes sequences
T5330 360-367 CHEMINF_GO_EXT:chemical_binding_or_bond_formation denotes binding
T5331 368-373 SO_EXT:sequence_or_structure_motif denotes motif
T5332 378-383 PR_EXT:000010717 denotes MTF-1
T5333 433-441 SO_EXT:biological_sequence denotes sequence
T5334 486-491 PR_EXT:000010717 denotes MTF-1
T5335 499-503 SO_EXT:0000704 denotes gene
T5336 536-540 SO_EXT:0000704 denotes gene