PMC:1253828 / 19545-20119
Annnotations
craft-sa-dev
Id | Subject | Object | Predicate | Lexical cue |
---|---|---|---|---|
T5834 | 0-3 | IN | denotes | For |
T5835 | 82-88 | VBZ | denotes | exerts |
T5836 | 4-7 | DT | denotes | all |
T5837 | 21-26 | NNS | denotes | genes |
T5838 | 8-11 | NN | denotes | MTF |
T5839 | 11-12 | HYPH | denotes | - |
T5840 | 12-13 | CD | denotes | 1 |
T5841 | 14-20 | NN | denotes | target |
T5842 | 27-40 | VBN | denotes | characterized |
T5843 | 41-43 | RB | denotes | so |
T5844 | 44-47 | RB | denotes | far |
T5845 | 47-49 | , | denotes | , |
T5846 | 49-53 | JJ | denotes | such |
T5847 | 54-56 | IN | denotes | as |
T5848 | 57-60 | NN | denotes | Mt1 |
T5849 | 60-62 | , | denotes | , |
T5850 | 62-65 | NN | denotes | Mt2 |
T5851 | 66-69 | CC | denotes | and |
T5852 | 70-74 | NN | denotes | Znt1 |
T5853 | 74-76 | , | denotes | , |
T5854 | 76-79 | NN | denotes | MTF |
T5855 | 79-80 | HYPH | denotes | - |
T5856 | 80-81 | CD | denotes | 1 |
T5857 | 89-92 | PRP$ | denotes | its |
T5858 | 120-128 | NN | denotes | activity |
T5859 | 93-108 | JJ | denotes | transcriptional |
T5860 | 109-119 | NN | denotes | activation |
T5861 | 129-132 | IN | denotes | via |
T5862 | 133-141 | JJ | denotes | standard |
T5863 | 146-155 | NNS | denotes | sequences |
T5864 | 142-145 | NN | denotes | MRE |
T5865 | 156-163 | VBN | denotes | located |
T5866 | 164-172 | RB | denotes | proximal |
T5867 | 173-175 | IN | denotes | to |
T5868 | 176-179 | DT | denotes | the |
T5869 | 194-199 | NN | denotes | start |
T5870 | 180-193 | NN | denotes | transcription |
T5871 | 200-201 | -LRB- | denotes | ( |
T5872 | 210-212 | CD | denotes | 19 |
T5873 | 201-202 | CD | denotes | 4 |
T5874 | 202-203 | , | denotes | , |
T5875 | 203-204 | CD | denotes | 5 |
T5876 | 204-205 | , | denotes | , |
T5877 | 205-206 | CD | denotes | 8 |
T5878 | 206-207 | , | denotes | , |
T5879 | 207-209 | CD | denotes | 18 |
T5880 | 209-210 | , | denotes | , |
T5881 | 212-213 | -RRB- | denotes | ) |
T5882 | 213-214 | . | denotes | . |
T5883 | 214-419 | sentence | denotes | Even a specific search for MTF-1 binding sites by selection from a pool of double-stranded oligonucleotides with random sequences yielded no new binding motif for MTF-1 in addition to the known MREs (34). |
T5884 | 215-219 | RB | denotes | Even |
T5885 | 231-237 | NN | denotes | search |
T5886 | 220-221 | DT | denotes | a |
T5887 | 222-230 | JJ | denotes | specific |
T5888 | 345-352 | VBD | denotes | yielded |
T5889 | 238-241 | IN | denotes | for |
T5890 | 242-245 | NN | denotes | MTF |
T5891 | 256-261 | NNS | denotes | sites |
T5892 | 245-246 | HYPH | denotes | - |
T5893 | 246-247 | CD | denotes | 1 |
T5894 | 248-255 | NN | denotes | binding |
T5895 | 262-264 | IN | denotes | by |
T5896 | 265-274 | NN | denotes | selection |
T5897 | 275-279 | IN | denotes | from |
T5898 | 280-281 | DT | denotes | a |
T5899 | 282-286 | NN | denotes | pool |
T5900 | 287-289 | IN | denotes | of |
T5901 | 290-296 | JJ | denotes | double |
T5902 | 297-305 | VBN | denotes | stranded |
T5903 | 296-297 | HYPH | denotes | - |
T5904 | 306-322 | NNS | denotes | oligonucleotides |
T5905 | 323-327 | IN | denotes | with |
T5906 | 328-334 | JJ | denotes | random |
T5907 | 335-344 | NNS | denotes | sequences |
T5908 | 353-355 | DT | denotes | no |
T5909 | 368-373 | NN | denotes | motif |
T5910 | 356-359 | JJ | denotes | new |
T5911 | 360-367 | NN | denotes | binding |
T5912 | 374-377 | IN | denotes | for |
T5913 | 378-381 | NN | denotes | MTF |
T5914 | 381-382 | HYPH | denotes | - |
T5915 | 382-383 | CD | denotes | 1 |
T5916 | 384-386 | IN | denotes | in |
T5917 | 387-395 | NN | denotes | addition |
T5918 | 396-398 | IN | denotes | to |
T5919 | 399-402 | DT | denotes | the |
T5920 | 409-413 | NNS | denotes | MREs |
T5921 | 403-408 | JJ | denotes | known |
T5922 | 414-415 | -LRB- | denotes | ( |
T5923 | 415-417 | CD | denotes | 34 |
T5924 | 417-418 | -RRB- | denotes | ) |
T5925 | 418-419 | . | denotes | . |
T5926 | 419-574 | sentence | denotes | Thus, an MRE sequence is to date the only indication for a direct MTF-1 target gene, and four MRE-containing target gene candidates were further analyzed. |
T5927 | 420-424 | RB | denotes | Thus |
T5928 | 442-444 | VBZ | denotes | is |
T5929 | 424-426 | , | denotes | , |
T5930 | 426-428 | DT | denotes | an |
T5931 | 433-441 | NN | denotes | sequence |
T5932 | 429-432 | NN | denotes | MRE |
T5933 | 445-447 | IN | denotes | to |
T5934 | 448-452 | NN | denotes | date |
T5935 | 453-456 | DT | denotes | the |
T5936 | 462-472 | NN | denotes | indication |
T5937 | 457-461 | JJ | denotes | only |
T5938 | 473-476 | IN | denotes | for |
T5939 | 477-478 | DT | denotes | a |
T5940 | 499-503 | NN | denotes | gene |
T5941 | 479-485 | JJ | denotes | direct |
T5942 | 486-489 | NN | denotes | MTF |
T5943 | 489-490 | HYPH | denotes | - |
T5944 | 490-491 | CD | denotes | 1 |
T5945 | 492-498 | NN | denotes | target |
T5946 | 503-505 | , | denotes | , |
T5947 | 505-508 | CC | denotes | and |
T5948 | 509-513 | CD | denotes | four |
T5949 | 541-551 | NNS | denotes | candidates |
T5950 | 514-517 | NN | denotes | MRE |
T5951 | 518-528 | VBG | denotes | containing |
T5952 | 517-518 | HYPH | denotes | - |
T5953 | 529-535 | NN | denotes | target |
T5954 | 536-540 | NN | denotes | gene |
T5955 | 565-573 | VBN | denotes | analyzed |
T5956 | 552-556 | VBD | denotes | were |
T5957 | 557-564 | RB | denotes | further |
T5958 | 573-574 | . | denotes | . |
R3796 | T5834 | T5835 | prep | For,exerts |
R3797 | T5836 | T5837 | det | all,genes |
R3798 | T5837 | T5834 | pobj | genes,For |
R3799 | T5838 | T5837 | nmod | MTF,genes |
R3800 | T5839 | T5838 | punct | -,MTF |
R3801 | T5840 | T5838 | nummod | 1,MTF |
R3802 | T5841 | T5837 | compound | target,genes |
R3803 | T5842 | T5837 | acl | characterized,genes |
R3804 | T5843 | T5844 | advmod | so,far |
R3805 | T5844 | T5842 | advmod | far,characterized |
R3806 | T5845 | T5837 | punct | ", ",genes |
R3807 | T5846 | T5847 | amod | such,as |
R3808 | T5847 | T5837 | prep | as,genes |
R3809 | T5848 | T5847 | pobj | Mt1,as |
R3810 | T5849 | T5848 | punct | ", ",Mt1 |
R3811 | T5850 | T5848 | conj | Mt2,Mt1 |
R3812 | T5851 | T5850 | cc | and,Mt2 |
R3813 | T5852 | T5850 | conj | Znt1,Mt2 |
R3814 | T5853 | T5835 | punct | ", ",exerts |
R3815 | T5854 | T5835 | nsubj | MTF,exerts |
R3816 | T5855 | T5854 | punct | -,MTF |
R3817 | T5856 | T5854 | nummod | 1,MTF |
R3818 | T5857 | T5858 | poss | its,activity |
R3819 | T5858 | T5835 | dobj | activity,exerts |
R3820 | T5859 | T5860 | amod | transcriptional,activation |
R3821 | T5860 | T5858 | compound | activation,activity |
R3822 | T5861 | T5835 | prep | via,exerts |
R3823 | T5862 | T5863 | amod | standard,sequences |
R3824 | T5863 | T5861 | pobj | sequences,via |
R3825 | T5864 | T5863 | compound | MRE,sequences |
R3826 | T5865 | T5863 | acl | located,sequences |
R3827 | T5866 | T5865 | advmod | proximal,located |
R3828 | T5867 | T5866 | prep | to,proximal |
R3829 | T5868 | T5869 | det | the,start |
R3830 | T5869 | T5867 | pobj | start,to |
R3831 | T5870 | T5869 | compound | transcription,start |
R3832 | T5871 | T5872 | punct | (,19 |
R3833 | T5872 | T5835 | parataxis | 19,exerts |
R3834 | T5873 | T5872 | nummod | 4,19 |
R3835 | T5874 | T5872 | punct | ",",19 |
R3836 | T5875 | T5872 | nummod | 5,19 |
R3837 | T5876 | T5872 | punct | ",",19 |
R3838 | T5877 | T5872 | nummod | 8,19 |
R3839 | T5878 | T5872 | punct | ",",19 |
R3840 | T5879 | T5872 | nummod | 18,19 |
R3841 | T5880 | T5872 | punct | ",",19 |
R3842 | T5881 | T5872 | punct | ),19 |
R3843 | T5882 | T5835 | punct | .,exerts |
R3844 | T5884 | T5885 | advmod | Even,search |
R3845 | T5885 | T5888 | nsubj | search,yielded |
R3846 | T5886 | T5885 | det | a,search |
R3847 | T5887 | T5885 | amod | specific,search |
R3848 | T5889 | T5885 | prep | for,search |
R3849 | T5890 | T5891 | nmod | MTF,sites |
R3850 | T5891 | T5889 | pobj | sites,for |
R3851 | T5892 | T5890 | punct | -,MTF |
R3852 | T5893 | T5890 | nummod | 1,MTF |
R3853 | T5894 | T5891 | compound | binding,sites |
R3854 | T5895 | T5885 | prep | by,search |
R3855 | T5896 | T5895 | pobj | selection,by |
R3856 | T5897 | T5896 | prep | from,selection |
R3857 | T5898 | T5899 | det | a,pool |
R3858 | T5899 | T5897 | pobj | pool,from |
R3859 | T5900 | T5899 | prep | of,pool |
R3860 | T5901 | T5902 | amod | double,stranded |
R3861 | T5902 | T5904 | amod | stranded,oligonucleotides |
R3862 | T5903 | T5902 | punct | -,stranded |
R3863 | T5904 | T5900 | pobj | oligonucleotides,of |
R3864 | T5905 | T5904 | prep | with,oligonucleotides |
R3865 | T5906 | T5907 | amod | random,sequences |
R3866 | T5907 | T5905 | pobj | sequences,with |
R3867 | T5908 | T5909 | det | no,motif |
R3868 | T5909 | T5888 | dobj | motif,yielded |
R3869 | T5910 | T5909 | amod | new,motif |
R3870 | T5911 | T5909 | compound | binding,motif |
R3871 | T5912 | T5909 | prep | for,motif |
R3872 | T5913 | T5912 | pobj | MTF,for |
R3873 | T5914 | T5913 | punct | -,MTF |
R3874 | T5915 | T5913 | nummod | 1,MTF |
R3875 | T5916 | T5909 | prep | in,motif |
R3876 | T5917 | T5916 | pobj | addition,in |
R3877 | T5918 | T5917 | prep | to,addition |
R3878 | T5919 | T5920 | det | the,MREs |
R3879 | T5920 | T5918 | pobj | MREs,to |
R3880 | T5921 | T5920 | amod | known,MREs |
R3881 | T5922 | T5923 | punct | (,34 |
R3882 | T5923 | T5888 | parataxis | 34,yielded |
R3883 | T5924 | T5923 | punct | ),34 |
R3884 | T5925 | T5888 | punct | .,yielded |
R3885 | T5927 | T5928 | advmod | Thus,is |
R3886 | T5929 | T5928 | punct | ", ",is |
R3887 | T5930 | T5931 | det | an,sequence |
R3888 | T5931 | T5928 | nsubj | sequence,is |
R3889 | T5932 | T5931 | compound | MRE,sequence |
R3890 | T5933 | T5928 | prep | to,is |
R3891 | T5934 | T5933 | pobj | date,to |
R3892 | T5935 | T5936 | det | the,indication |
R3893 | T5936 | T5928 | attr | indication,is |
R3894 | T5937 | T5936 | amod | only,indication |
R3895 | T5938 | T5936 | prep | for,indication |
R3896 | T5939 | T5940 | det | a,gene |
R3897 | T5940 | T5938 | pobj | gene,for |
R3898 | T5941 | T5940 | amod | direct,gene |
R3899 | T5942 | T5940 | nmod | MTF,gene |
R3900 | T5943 | T5942 | punct | -,MTF |
R3901 | T5944 | T5942 | nummod | 1,MTF |
R3902 | T5945 | T5940 | compound | target,gene |
R3903 | T5946 | T5928 | punct | ", ",is |
R3904 | T5947 | T5928 | cc | and,is |
R3905 | T5948 | T5949 | nummod | four,candidates |
R3906 | T5949 | T5955 | nsubjpass | candidates,analyzed |
R3907 | T5950 | T5951 | npadvmod | MRE,containing |
R3908 | T5951 | T5949 | amod | containing,candidates |
R3909 | T5952 | T5951 | punct | -,containing |
R3910 | T5953 | T5949 | compound | target,candidates |
R3911 | T5954 | T5949 | compound | gene,candidates |
R3912 | T5955 | T5928 | conj | analyzed,is |
R3913 | T5956 | T5955 | auxpass | were,analyzed |
R3914 | T5957 | T5955 | advmod | further,analyzed |
R3915 | T5958 | T5955 | punct | .,analyzed |
2_test
Id | Subject | Object | Predicate | Lexical cue |
---|---|---|---|---|
16221973-8026472-77403425 | 201-202 | 8026472 | denotes | 4 |
16221973-8824273-77403426 | 203-204 | 8824273 | denotes | 5 |
16221973-6095286-77403427 | 205-206 | 6095286 | denotes | 8 |
16221973-10096565-77403428 | 207-209 | 10096565 | denotes | 18 |
16221973-10952993-77403429 | 210-212 | 10952993 | denotes | 19 |
16221973-15318811-77403430 | 415-417 | 15318811 | denotes | 34 |
craft-ca-core-dev
Below, discontinuous spans are shown in the bag model. You can change it to the chain model.
Id | Subject | Object | Predicate | Lexical cue |
---|---|---|---|---|
T5203 | 8-13 | PR:000010717 | denotes | MTF-1 |
T5204 | 21-26 | SO:0000704 | denotes | genes |
T5205 | 57-60 | PR:000010925 | denotes | Mt1 |
T5206 | 62-65 | PR:000010704 | denotes | Mt2 |
T5207 | 70-74 | PR:000015073 | denotes | Znt1 |
T5208 | 76-81 | PR:000010717 | denotes | MTF-1 |
T5209 | 242-247 | PR:000010717 | denotes | MTF-1 |
T5210 | 248-261 | SO:0000409 | denotes | binding sites |
T5211 | 290-322 | SO:0000442 | denotes | double-stranded oligonucleotides |
T5212 | 378-383 | PR:000010717 | denotes | MTF-1 |
T5213 | 486-491 | PR:000010717 | denotes | MTF-1 |
T5214 | 499-503 | SO:0000704 | denotes | gene |
T5215 | 536-540 | SO:0000704 | denotes | gene |
craft-ca-core-ex-dev
Below, discontinuous spans are shown in the bag model. You can change it to the chain model.
Id | Subject | Object | Predicate | Lexical cue |
---|---|---|---|---|
T5315 | 8-13 | PR_EXT:000010717 | denotes | MTF-1 |
T5316 | 21-26 | SO_EXT:0000704 | denotes | genes |
T5317 | 57-60 | PR_EXT:000010925 | denotes | Mt1 |
T5318 | 62-65 | PR_EXT:000010704 | denotes | Mt2 |
T5319 | 70-74 | PR_EXT:000015073 | denotes | Znt1 |
T5320 | 76-81 | PR_EXT:000010717 | denotes | MTF-1 |
T5321 | 93-108 | GO_EXT:transcription | denotes | transcriptional |
T5322 | 146-155 | SO_EXT:biological_sequence | denotes | sequences |
T5323 | 180-199 | GO_SO_EXT:transcriptional_start_entity_or_process | denotes | transcription start |
T5324 | 242-247 | PR_EXT:000010717 | denotes | MTF-1 |
T5325 | 248-255 | CHEMINF_GO_EXT:chemical_binding_or_bond_formation | denotes | binding |
T5326 | 248-261 | SO_EXT:0000409 | denotes | binding sites |
T5327 | 290-322 | SO_EXT:0000442 | denotes | double-stranded oligonucleotides |
T5328 | 306-322 | CHEBI_SO_EXT:oligonucleotide | denotes | oligonucleotides |
T5329 | 335-344 | SO_EXT:biological_sequence | denotes | sequences |
T5330 | 360-367 | CHEMINF_GO_EXT:chemical_binding_or_bond_formation | denotes | binding |
T5331 | 368-373 | SO_EXT:sequence_or_structure_motif | denotes | motif |
T5332 | 378-383 | PR_EXT:000010717 | denotes | MTF-1 |
T5333 | 433-441 | SO_EXT:biological_sequence | denotes | sequence |
T5334 | 486-491 | PR_EXT:000010717 | denotes | MTF-1 |
T5335 | 499-503 | SO_EXT:0000704 | denotes | gene |
T5336 | 536-540 | SO_EXT:0000704 | denotes | gene |