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PMC:1140370 / 24661-26014 JSONTXT

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Id Subject Object Predicate Lexical cue
T7743 0-3 PRP$ denotes Our
T7744 4-11 NNS denotes results
T7745 12-20 VBP denotes indicate
T7746 21-25 IN denotes that
T7747 62-70 VBN denotes required
T7748 26-33 NN denotes thymine
T7749 34-38 JJ denotes rich
T7750 33-34 HYPH denotes -
T7751 55-58 NN denotes DNA
T7752 39-45 JJ denotes single
T7753 46-54 VBN denotes stranded
T7754 45-46 HYPH denotes -
T7755 59-61 VBZ denotes is
T7756 71-74 IN denotes for
T7757 75-82 JJ denotes initial
T7758 83-90 NN denotes loading
T7759 91-94 CC denotes and
T7760 95-105 NN denotes activation
T7761 106-108 IN denotes of
T7762 109-112 DT denotes the
T7763 117-125 NN denotes helicase
T7764 113-116 NN denotes Mcm
T7765 125-126 . denotes .
T7766 126-230 sentence denotes However, it is not known whether thymine sequences are required for processive unwinding of duplex DNA.
T7767 127-134 RB denotes However
T7768 146-151 VBN denotes known
T7769 134-136 , denotes ,
T7770 136-138 PRP denotes it
T7771 139-141 VBZ denotes is
T7772 142-145 RB denotes not
T7773 152-159 IN denotes whether
T7774 182-190 VBN denotes required
T7775 160-167 NN denotes thymine
T7776 168-177 NNS denotes sequences
T7777 178-181 VBP denotes are
T7778 191-194 IN denotes for
T7779 195-205 JJ denotes processive
T7780 206-215 NN denotes unwinding
T7781 216-218 IN denotes of
T7782 219-225 NN denotes duplex
T7783 226-229 NN denotes DNA
T7784 229-230 . denotes .
T7785 230-346 sentence denotes Therefore, we have examined whether the nucleotide composition of the duplex region affects its unwinding activity.
T7786 231-240 RB denotes Therefore
T7787 250-258 VBN denotes examined
T7788 240-242 , denotes ,
T7789 242-244 PRP denotes we
T7790 245-249 VBP denotes have
T7791 259-266 IN denotes whether
T7792 315-322 VBZ denotes affects
T7793 267-270 DT denotes the
T7794 282-293 NN denotes composition
T7795 271-281 NN denotes nucleotide
T7796 294-296 IN denotes of
T7797 297-300 DT denotes the
T7798 308-314 NN denotes region
T7799 301-307 NN denotes duplex
T7800 323-326 PRP$ denotes its
T7801 337-345 NN denotes activity
T7802 327-336 NN denotes unwinding
T7803 345-346 . denotes .
T7804 346-484 sentence denotes To address this issue, we constructed a series of T-tailed Y-fork structures (T-fork) containing various sequences in the duplex segment.
T7805 347-349 TO denotes To
T7806 350-357 VB denotes address
T7807 373-384 VBD denotes constructed
T7808 358-362 DT denotes this
T7809 363-368 NN denotes issue
T7810 368-370 , denotes ,
T7811 370-372 PRP denotes we
T7812 385-386 DT denotes a
T7813 387-393 NN denotes series
T7814 394-396 IN denotes of
T7815 397-398 NN denotes T
T7816 399-405 VBN denotes tailed
T7817 398-399 HYPH denotes -
T7818 413-423 NNS denotes structures
T7819 406-407 NN denotes Y
T7820 408-412 NN denotes fork
T7821 407-408 HYPH denotes -
T7822 424-425 -LRB- denotes (
T7823 425-426 NN denotes T
T7824 427-431 NN denotes fork
T7825 426-427 HYPH denotes -
T7826 431-432 -RRB- denotes )
T7827 433-443 VBG denotes containing
T7828 444-451 JJ denotes various
T7829 452-461 NNS denotes sequences
T7830 462-464 IN denotes in
T7831 465-468 DT denotes the
T7832 476-483 NN denotes segment
T7833 469-475 NN denotes duplex
T7834 483-484 . denotes .
T7835 484-557 sentence denotes They carried varied contents of cytosine residues on the 3′-tail strand.
T7836 485-489 PRP denotes They
T7837 490-497 VBD denotes carried
T7838 498-504 VBN denotes varied
T7839 505-513 NNS denotes contents
T7840 514-516 IN denotes of
T7841 517-525 NN denotes cytosine
T7842 526-534 NNS denotes residues
T7843 535-537 IN denotes on
T7844 538-541 DT denotes the
T7845 550-556 NN denotes strand
T7846 542-543 CD denotes 3
T7847 545-549 NN denotes tail
T7848 543-544 SYM denotes ′
T7849 544-545 HYPH denotes -
T7850 556-557 . denotes .
T7851 557-734 sentence denotes In gel shift assays, Mcm4/6/7 bound to these Y-fork substrates with identical affinity (Figure 8A), consistent with the notion that the Mcm4/6/7 binds to single-stranded tails.
T7852 558-560 IN denotes In
T7853 588-593 VBD denotes bound
T7854 561-564 NN denotes gel
T7855 565-570 NN denotes shift
T7856 571-577 NNS denotes assays
T7857 577-579 , denotes ,
T7858 579-583 NN denotes Mcm4
T7859 583-584 HYPH denotes /
T7860 584-585 CD denotes 6
T7861 585-586 HYPH denotes /
T7862 586-587 CD denotes 7
T7863 594-596 IN denotes to
T7864 597-602 DT denotes these
T7865 610-620 NNS denotes substrates
T7866 603-604 NN denotes Y
T7867 605-609 NN denotes fork
T7868 604-605 HYPH denotes -
T7869 621-625 IN denotes with
T7870 626-635 JJ denotes identical
T7871 636-644 NN denotes affinity
T7872 645-646 -LRB- denotes (
T7873 653-655 NN denotes 8A
T7874 646-652 NN denotes Figure
T7875 655-656 -RRB- denotes )
T7876 656-658 , denotes ,
T7877 658-668 JJ denotes consistent
T7878 669-673 IN denotes with
T7879 674-677 DT denotes the
T7880 678-684 NN denotes notion
T7881 685-689 IN denotes that
T7882 703-708 VBZ denotes binds
T7883 690-693 DT denotes the
T7884 694-698 NN denotes Mcm4
T7885 698-699 HYPH denotes /
T7886 699-700 CD denotes 6
T7887 700-701 HYPH denotes /
T7888 701-702 CD denotes 7
T7889 709-711 IN denotes to
T7890 712-718 JJ denotes single
T7891 719-727 VBN denotes stranded
T7892 718-719 HYPH denotes -
T7893 728-733 NNS denotes tails
T7894 733-734 . denotes .
T7895 734-886 sentence denotes However, in DNA helicase assays, T-fork/(C:G)49 was hardly displaced by Mcm4/6/7, but was readily displaced by SV40 T-antigen DNA helicase (Figure 8B).
T7896 735-742 RB denotes However
T7897 794-803 VBN denotes displaced
T7898 742-744 , denotes ,
T7899 744-746 IN denotes in
T7900 747-750 NN denotes DNA
T7901 751-759 NN denotes helicase
T7902 760-766 NNS denotes assays
T7903 766-768 , denotes ,
T7904 768-769 NN denotes T
T7905 770-774 NN denotes fork
T7906 769-770 HYPH denotes -
T7907 774-775 HYPH denotes /
T7908 775-776 -LRB- denotes (
T7909 778-779 NN denotes G
T7910 776-777 NN denotes C
T7911 777-778 : denotes :
T7912 779-780 -RRB- denotes )
T7913 780-782 CD denotes 49
T7914 783-786 VBD denotes was
T7915 787-793 RB denotes hardly
T7916 804-806 IN denotes by
T7917 807-811 NN denotes Mcm4
T7918 811-812 HYPH denotes /
T7919 812-813 CD denotes 6
T7920 813-814 HYPH denotes /
T7921 814-815 CD denotes 7
T7922 815-817 , denotes ,
T7923 817-820 CC denotes but
T7924 821-824 VBD denotes was
T7925 833-842 VBN denotes displaced
T7926 825-832 RB denotes readily
T7927 843-845 IN denotes by
T7928 846-850 NN denotes SV40
T7929 865-873 NN denotes helicase
T7930 851-852 NN denotes T
T7931 853-860 NN denotes antigen
T7932 852-853 HYPH denotes -
T7933 861-864 NN denotes DNA
T7934 874-875 -LRB- denotes (
T7935 882-884 NN denotes 8B
T7936 875-881 NN denotes Figure
T7937 884-885 -RRB- denotes )
T7938 885-886 . denotes .
T7939 886-1052 sentence denotes When thymine or adenine is inserted as every third nucleotide (repeats of CCT or CCA), the extent of unwinding increased (T-fork/(CCT:GGA)16 and T-fork/(CCA:GGT)16).
T7940 887-891 WRB denotes When
T7941 914-922 VBN denotes inserted
T7942 892-899 NN denotes thymine
T7943 900-902 CC denotes or
T7944 903-910 NN denotes adenine
T7945 911-913 VBZ denotes is
T7946 998-1007 VBD denotes increased
T7947 923-925 IN denotes as
T7948 926-931 DT denotes every
T7949 938-948 NN denotes nucleotide
T7950 932-937 JJ denotes third
T7951 949-950 -LRB- denotes (
T7952 950-957 NNS denotes repeats
T7953 958-960 IN denotes of
T7954 961-964 NN denotes CCT
T7955 965-967 CC denotes or
T7956 968-971 NN denotes CCA
T7957 971-972 -RRB- denotes )
T7958 972-974 , denotes ,
T7959 974-977 DT denotes the
T7960 978-984 NN denotes extent
T7961 985-987 IN denotes of
T7962 988-997 NN denotes unwinding
T7963 1008-1009 -LRB- denotes (
T7964 1021-1024 NN denotes GGA
T7965 1009-1010 NN denotes T
T7966 1011-1015 NN denotes fork
T7967 1010-1011 HYPH denotes -
T7968 1015-1016 HYPH denotes /
T7969 1016-1017 -LRB- denotes (
T7970 1017-1020 NN denotes CCT
T7971 1020-1021 : denotes :
T7972 1024-1025 -RRB- denotes )
T7973 1025-1027 CD denotes 16
T7974 1028-1031 CC denotes and
T7975 1032-1033 NN denotes T
T7976 1034-1038 NN denotes fork
T7977 1033-1034 HYPH denotes -
T7978 1044-1047 NN denotes GGT
T7979 1038-1039 HYPH denotes /
T7980 1039-1040 -LRB- denotes (
T7981 1040-1043 NN denotes CCA
T7982 1043-1044 : denotes :
T7983 1047-1048 -RRB- denotes )
T7984 1048-1050 CD denotes 16
T7985 1050-1051 -RRB- denotes )
T7986 1051-1052 . denotes .
T7987 1052-1257 sentence denotes The efficiency of unwinding is roughly correlated with the content of GC pairs in the duplex segment [T-fork/(CCAA:GGTT)12, T-fork/(CCTT:GGAA)12, T-fork/(CAAA:GTTT)12 and T-fork/(CTTT:GAAA)12; Figure 8B].
T7988 1053-1056 DT denotes The
T7989 1057-1067 NN denotes efficiency
T7990 1092-1102 VBN denotes correlated
T7991 1068-1070 IN denotes of
T7992 1071-1080 NN denotes unwinding
T7993 1081-1083 VBZ denotes is
T7994 1084-1091 RB denotes roughly
T7995 1103-1107 IN denotes with
T7996 1108-1111 DT denotes the
T7997 1112-1119 NN denotes content
T7998 1120-1122 IN denotes of
T7999 1123-1125 NN denotes GC
T8000 1126-1131 NNS denotes pairs
T8001 1132-1134 IN denotes in
T8002 1135-1138 DT denotes the
T8003 1146-1153 NN denotes segment
T8004 1139-1145 NN denotes duplex
T8005 1154-1155 -LRB- denotes [
T8006 1168-1172 NN denotes GGTT
T8007 1155-1156 NN denotes T
T8008 1157-1161 NN denotes fork
T8009 1156-1157 HYPH denotes -
T8010 1161-1162 HYPH denotes /
T8011 1162-1163 -LRB- denotes (
T8012 1163-1167 NN denotes CCAA
T8013 1167-1168 : denotes :
T8014 1172-1173 -RRB- denotes )
T8015 1173-1175 CD denotes 12
T8016 1175-1177 , denotes ,
T8017 1177-1178 NN denotes T
T8018 1179-1183 NN denotes fork
T8019 1178-1179 HYPH denotes -
T8020 1190-1194 NN denotes GGAA
T8021 1183-1184 HYPH denotes /
T8022 1184-1185 -LRB- denotes (
T8023 1185-1189 NN denotes CCTT
T8024 1189-1190 : denotes :
T8025 1194-1195 -RRB- denotes )
T8026 1195-1197 CD denotes 12
T8027 1197-1199 , denotes ,
T8028 1199-1200 NN denotes T
T8029 1201-1205 NN denotes fork
T8030 1200-1201 HYPH denotes -
T8031 1212-1216 NN denotes GTTT
T8032 1205-1206 HYPH denotes /
T8033 1206-1207 -LRB- denotes (
T8034 1207-1211 NN denotes CAAA
T8035 1211-1212 : denotes :
T8036 1216-1217 -RRB- denotes )
T8037 1217-1219 CD denotes 12
T8038 1220-1223 CC denotes and
T8039 1224-1225 NN denotes T
T8040 1226-1230 NN denotes fork
T8041 1225-1226 HYPH denotes -
T8042 1237-1241 NN denotes GAAA
T8043 1230-1231 HYPH denotes /
T8044 1231-1232 -LRB- denotes (
T8045 1232-1236 NN denotes CTTT
T8046 1236-1237 : denotes :
T8047 1241-1242 -RRB- denotes )
T8048 1242-1244 CD denotes 12
T8049 1244-1245 : denotes ;
T8050 1253-1255 NN denotes 8B
T8051 1246-1252 NN denotes Figure
T8052 1255-1256 -RRB- denotes ]
T8053 1256-1257 . denotes .
T8054 1257-1353 sentence denotes It appears that the duplex segment containing <50% GC pairs is efficiently unwound (Figure 8C).
T8055 1258-1260 PRP denotes It
T8056 1261-1268 VBZ denotes appears
T8057 1269-1273 IN denotes that
T8058 1333-1340 VBN denotes unwound
T8059 1274-1277 DT denotes the
T8060 1285-1292 NN denotes segment
T8061 1278-1284 NN denotes duplex
T8062 1293-1303 VBG denotes containing
T8063 1304-1305 SYM denotes <
T8064 1305-1307 CD denotes 50
T8065 1307-1308 NN denotes %
T8066 1312-1317 NNS denotes pairs
T8067 1309-1311 NN denotes GC
T8068 1318-1320 VBZ denotes is
T8069 1321-1332 RB denotes efficiently
T8070 1341-1342 -LRB- denotes (
T8071 1349-1351 NN denotes 8C
T8072 1342-1348 NN denotes Figure
T8073 1351-1352 -RRB- denotes )
T8074 1352-1353 . denotes .
R5143 T7743 T7744 poss Our,results
R5144 T7744 T7745 nsubj results,indicate
R5145 T7746 T7747 mark that,required
R5146 T7747 T7745 ccomp required,indicate
R5147 T7748 T7749 npadvmod thymine,rich
R5148 T7749 T7751 amod rich,DNA
R5149 T7750 T7749 punct -,rich
R5150 T7751 T7747 nsubjpass DNA,required
R5151 T7752 T7753 amod single,stranded
R5152 T7753 T7751 amod stranded,DNA
R5153 T7754 T7753 punct -,stranded
R5154 T7755 T7747 auxpass is,required
R5155 T7756 T7747 prep for,required
R5156 T7757 T7758 amod initial,loading
R5157 T7758 T7756 pobj loading,for
R5158 T7759 T7758 cc and,loading
R5159 T7760 T7758 conj activation,loading
R5160 T7761 T7758 prep of,loading
R5161 T7762 T7763 det the,helicase
R5162 T7763 T7761 pobj helicase,of
R5163 T7764 T7763 compound Mcm,helicase
R5164 T7765 T7745 punct .,indicate
R5165 T7767 T7768 advmod However,known
R5166 T7769 T7768 punct ", ",known
R5167 T7770 T7768 nsubjpass it,known
R5168 T7771 T7768 auxpass is,known
R5169 T7772 T7768 neg not,known
R5170 T7773 T7774 mark whether,required
R5171 T7774 T7768 ccomp required,known
R5172 T7775 T7776 compound thymine,sequences
R5173 T7776 T7774 nsubjpass sequences,required
R5174 T7777 T7774 auxpass are,required
R5175 T7778 T7774 prep for,required
R5176 T7779 T7780 amod processive,unwinding
R5177 T7780 T7778 pobj unwinding,for
R5178 T7781 T7780 prep of,unwinding
R5179 T7782 T7783 compound duplex,DNA
R5180 T7783 T7781 pobj DNA,of
R5181 T7784 T7768 punct .,known
R5182 T7786 T7787 advmod Therefore,examined
R5183 T7788 T7787 punct ", ",examined
R5184 T7789 T7787 nsubj we,examined
R5185 T7790 T7787 aux have,examined
R5186 T7791 T7792 mark whether,affects
R5187 T7792 T7787 ccomp affects,examined
R5188 T7793 T7794 det the,composition
R5189 T7794 T7792 nsubj composition,affects
R5190 T7795 T7794 compound nucleotide,composition
R5191 T7796 T7794 prep of,composition
R5192 T7797 T7798 det the,region
R5193 T7798 T7796 pobj region,of
R5194 T7799 T7798 compound duplex,region
R5195 T7800 T7801 poss its,activity
R5196 T7801 T7792 dobj activity,affects
R5197 T7802 T7801 compound unwinding,activity
R5198 T7803 T7787 punct .,examined
R5199 T7805 T7806 aux To,address
R5200 T7806 T7807 advcl address,constructed
R5201 T7808 T7809 det this,issue
R5202 T7809 T7806 dobj issue,address
R5203 T7810 T7807 punct ", ",constructed
R5204 T7811 T7807 nsubj we,constructed
R5205 T7812 T7813 det a,series
R5206 T7813 T7807 dobj series,constructed
R5207 T7814 T7813 prep of,series
R5208 T7815 T7816 npadvmod T,tailed
R5209 T7816 T7818 amod tailed,structures
R5210 T7817 T7816 punct -,tailed
R5211 T7818 T7814 pobj structures,of
R5212 T7819 T7820 compound Y,fork
R5213 T7820 T7818 compound fork,structures
R5214 T7821 T7820 punct -,fork
R5215 T7822 T7818 punct (,structures
R5216 T7823 T7824 compound T,fork
R5217 T7824 T7818 appos fork,structures
R5218 T7825 T7824 punct -,fork
R5219 T7826 T7818 punct ),structures
R5220 T7827 T7818 acl containing,structures
R5221 T7828 T7829 amod various,sequences
R5222 T7829 T7827 dobj sequences,containing
R5223 T7830 T7807 prep in,constructed
R5224 T7831 T7832 det the,segment
R5225 T7832 T7830 pobj segment,in
R5226 T7833 T7832 compound duplex,segment
R5227 T7834 T7807 punct .,constructed
R5228 T7836 T7837 nsubj They,carried
R5229 T7838 T7839 amod varied,contents
R5230 T7839 T7837 dobj contents,carried
R5231 T7840 T7839 prep of,contents
R5232 T7841 T7842 compound cytosine,residues
R5233 T7842 T7840 pobj residues,of
R5234 T7843 T7837 prep on,carried
R5235 T7844 T7845 det the,strand
R5236 T7845 T7843 pobj strand,on
R5237 T7846 T7847 nummod 3,tail
R5238 T7847 T7845 compound tail,strand
R5239 T7848 T7846 punct ′,3
R5240 T7849 T7847 punct -,tail
R5241 T7850 T7837 punct .,carried
R5242 T7852 T7853 prep In,bound
R5243 T7854 T7855 compound gel,shift
R5244 T7855 T7856 compound shift,assays
R5245 T7856 T7852 pobj assays,In
R5246 T7857 T7853 punct ", ",bound
R5247 T7858 T7853 nsubj Mcm4,bound
R5248 T7859 T7858 punct /,Mcm4
R5249 T7860 T7858 nummod 6,Mcm4
R5250 T7861 T7858 punct /,Mcm4
R5251 T7862 T7858 nummod 7,Mcm4
R5252 T7863 T7853 prep to,bound
R5253 T7864 T7865 det these,substrates
R5254 T7865 T7863 pobj substrates,to
R5255 T7866 T7867 compound Y,fork
R5256 T7867 T7865 compound fork,substrates
R5257 T7868 T7867 punct -,fork
R5258 T7869 T7853 prep with,bound
R5259 T7870 T7871 amod identical,affinity
R5260 T7871 T7869 pobj affinity,with
R5261 T7872 T7873 punct (,8A
R5262 T7873 T7871 parataxis 8A,affinity
R5263 T7874 T7873 compound Figure,8A
R5264 T7875 T7873 punct ),8A
R5265 T7876 T7853 punct ", ",bound
R5266 T7877 T7853 advcl consistent,bound
R5267 T7878 T7877 prep with,consistent
R5268 T7879 T7880 det the,notion
R5269 T7880 T7878 pobj notion,with
R5270 T7881 T7882 mark that,binds
R5271 T7882 T7880 acl binds,notion
R5272 T7883 T7884 det the,Mcm4
R5273 T7884 T7882 nsubj Mcm4,binds
R5274 T7885 T7884 punct /,Mcm4
R5275 T7886 T7884 nummod 6,Mcm4
R5276 T7887 T7884 punct /,Mcm4
R5277 T7888 T7884 nummod 7,Mcm4
R5278 T7889 T7882 prep to,binds
R5279 T7890 T7891 amod single,stranded
R5280 T7891 T7893 amod stranded,tails
R5281 T7892 T7891 punct -,stranded
R5282 T7893 T7889 pobj tails,to
R5283 T7894 T7853 punct .,bound
R5284 T7896 T7897 advmod However,displaced
R5285 T7898 T7897 punct ", ",displaced
R5286 T7899 T7897 prep in,displaced
R5287 T7900 T7901 compound DNA,helicase
R5288 T7901 T7902 compound helicase,assays
R5289 T7902 T7899 pobj assays,in
R5290 T7903 T7897 punct ", ",displaced
R5291 T7904 T7905 compound T,fork
R5292 T7905 T7897 nsubjpass fork,displaced
R5293 T7906 T7905 punct -,fork
R5294 T7907 T7905 punct /,fork
R5295 T7908 T7909 punct (,G
R5296 T7909 T7905 appos G,fork
R5297 T7910 T7909 nmod C,G
R5298 T7911 T7909 punct :,G
R5299 T7912 T7909 punct ),G
R5300 T7913 T7909 nummod 49,G
R5301 T7914 T7897 auxpass was,displaced
R5302 T7915 T7897 advmod hardly,displaced
R5303 T7916 T7897 agent by,displaced
R5304 T7917 T7916 pobj Mcm4,by
R5305 T7918 T7917 punct /,Mcm4
R5306 T7919 T7917 nummod 6,Mcm4
R5307 T7920 T7917 punct /,Mcm4
R5308 T7921 T7917 nummod 7,Mcm4
R5309 T7922 T7897 punct ", ",displaced
R5310 T7923 T7897 cc but,displaced
R5311 T7924 T7925 auxpass was,displaced
R5312 T7925 T7897 conj displaced,displaced
R5313 T7926 T7925 advmod readily,displaced
R5314 T7927 T7925 agent by,displaced
R5315 T7928 T7929 compound SV40,helicase
R5316 T7929 T7927 pobj helicase,by
R5317 T7930 T7931 compound T,antigen
R5318 T7931 T7929 compound antigen,helicase
R5319 T7932 T7931 punct -,antigen
R5320 T7933 T7929 compound DNA,helicase
R5321 T7934 T7935 punct (,8B
R5322 T7935 T7925 parataxis 8B,displaced
R5323 T7936 T7935 compound Figure,8B
R5324 T7937 T7935 punct ),8B
R5325 T7938 T7897 punct .,displaced
R5326 T7940 T7941 advmod When,inserted
R5327 T7941 T7946 advcl inserted,increased
R5328 T7942 T7941 nsubjpass thymine,inserted
R5329 T7943 T7942 cc or,thymine
R5330 T7944 T7942 conj adenine,thymine
R5331 T7945 T7941 auxpass is,inserted
R5332 T7947 T7941 prep as,inserted
R5333 T7948 T7949 det every,nucleotide
R5334 T7949 T7947 pobj nucleotide,as
R5335 T7950 T7949 amod third,nucleotide
R5336 T7951 T7952 punct (,repeats
R5337 T7952 T7949 parataxis repeats,nucleotide
R5338 T7953 T7952 prep of,repeats
R5339 T7954 T7953 pobj CCT,of
R5340 T7955 T7954 cc or,CCT
R5341 T7956 T7954 conj CCA,CCT
R5342 T7957 T7952 punct ),repeats
R5343 T7958 T7946 punct ", ",increased
R5344 T7959 T7960 det the,extent
R5345 T7960 T7946 nsubj extent,increased
R5346 T7961 T7960 prep of,extent
R5347 T7962 T7961 pobj unwinding,of
R5348 T7963 T7964 punct (,GGA
R5349 T7964 T7946 dobj GGA,increased
R5350 T7965 T7966 nmod T,fork
R5351 T7966 T7964 nmod fork,GGA
R5352 T7967 T7966 punct -,fork
R5353 T7968 T7964 punct /,GGA
R5354 T7969 T7964 punct (,GGA
R5355 T7970 T7964 nmod CCT,GGA
R5356 T7971 T7964 punct :,GGA
R5357 T7972 T7964 punct ),GGA
R5358 T7973 T7964 nummod 16,GGA
R5359 T7974 T7964 cc and,GGA
R5360 T7975 T7976 nmod T,fork
R5361 T7976 T7978 nmod fork,GGT
R5362 T7977 T7976 punct -,fork
R5363 T7978 T7964 conj GGT,GGA
R5364 T7979 T7978 punct /,GGT
R5365 T7980 T7978 punct (,GGT
R5366 T7981 T7978 nmod CCA,GGT
R5367 T7982 T7978 punct :,GGT
R5368 T7983 T7978 punct ),GGT
R5369 T7984 T7978 nummod 16,GGT
R5370 T7985 T7946 punct ),increased
R5371 T7986 T7946 punct .,increased
R5372 T7988 T7989 det The,efficiency
R5373 T7989 T7990 nsubjpass efficiency,correlated
R5374 T7991 T7989 prep of,efficiency
R5375 T7992 T7991 pobj unwinding,of
R5376 T7993 T7990 auxpass is,correlated
R5377 T7994 T7990 advmod roughly,correlated
R5378 T7995 T7990 prep with,correlated
R5379 T7996 T7997 det the,content
R5380 T7997 T7995 pobj content,with
R5381 T7998 T7997 prep of,content
R5382 T7999 T8000 compound GC,pairs
R5383 T8000 T7998 pobj pairs,of
R5384 T8001 T8000 prep in,pairs
R5385 T8002 T8003 det the,segment
R5386 T8003 T8001 pobj segment,in
R5387 T8004 T8003 compound duplex,segment
R5388 T8005 T8006 punct [,GGTT
R5389 T8006 T8000 appos GGTT,pairs
R5390 T8007 T8008 nmod T,fork
R5391 T8008 T8006 nmod fork,GGTT
R5392 T8009 T8008 punct -,fork
R5393 T8010 T8006 punct /,GGTT
R5394 T8011 T8006 punct (,GGTT
R5395 T8012 T8006 nmod CCAA,GGTT
R5396 T8013 T8006 punct :,GGTT
R5397 T8014 T8006 punct ),GGTT
R5398 T8015 T8006 nummod 12,GGTT
R5399 T8016 T8006 punct ", ",GGTT
R5400 T8017 T8018 nmod T,fork
R5401 T8018 T8020 nmod fork,GGAA
R5402 T8019 T8018 punct -,fork
R5403 T8020 T8006 conj GGAA,GGTT
R5404 T8021 T8020 punct /,GGAA
R5405 T8022 T8020 punct (,GGAA
R5406 T8023 T8020 nmod CCTT,GGAA
R5407 T8024 T8020 punct :,GGAA
R5408 T8025 T8020 punct ),GGAA
R5409 T8026 T8020 nummod 12,GGAA
R5410 T8027 T8020 punct ", ",GGAA
R5411 T8028 T8029 nmod T,fork
R5412 T8029 T8031 nmod fork,GTTT
R5413 T8030 T8029 punct -,fork
R5414 T8031 T8020 conj GTTT,GGAA
R5415 T8032 T8031 punct /,GTTT
R5416 T8033 T8031 punct (,GTTT
R5417 T8034 T8031 nmod CAAA,GTTT
R5418 T8035 T8031 punct :,GTTT
R5419 T8036 T8031 punct ),GTTT
R5420 T8037 T8031 nummod 12,GTTT
R5421 T8038 T8031 cc and,GTTT
R5422 T8039 T8040 nmod T,fork
R5423 T8040 T8042 nmod fork,GAAA
R5424 T8041 T8040 punct -,fork
R5425 T8042 T8031 conj GAAA,GTTT
R5426 T8043 T8042 punct /,GAAA
R5427 T8044 T8042 punct (,GAAA
R5428 T8045 T8042 nmod CTTT,GAAA
R5429 T8046 T8042 punct :,GAAA
R5430 T8047 T8042 punct ),GAAA
R5431 T8048 T8042 nummod 12,GAAA
R5432 T8049 T8050 punct ;,8B
R5433 T8050 T7990 parataxis 8B,correlated
R5434 T8051 T8050 compound Figure,8B
R5435 T8052 T8050 punct ],8B
R5436 T8053 T7990 punct .,correlated
R5437 T8055 T8056 nsubj It,appears
R5438 T8057 T8058 mark that,unwound
R5439 T8058 T8056 ccomp unwound,appears
R5440 T8059 T8060 det the,segment
R5441 T8060 T8058 nsubjpass segment,unwound
R5442 T8061 T8060 compound duplex,segment
R5443 T8062 T8060 acl containing,segment
R5444 T8063 T8064 punct <,50
R5445 T8064 T8065 nummod 50,%
R5446 T8065 T8066 compound %,pairs
R5447 T8066 T8062 dobj pairs,containing
R5448 T8067 T8066 compound GC,pairs
R5449 T8068 T8058 auxpass is,unwound
R5450 T8069 T8058 advmod efficiently,unwound
R5451 T8070 T8071 punct (,8C
R5452 T8071 T8058 parataxis 8C,unwound
R5453 T8072 T8071 compound Figure,8C
R5454 T8073 T8071 punct ),8C
R5455 T8074 T8056 punct .,appears

craft-ca-core-ex-dev

Below, discontinuous spans are shown in the chain model. You can change it to the bag model.

Id Subject Object Predicate Lexical cue
T7604 26-33 CHEBI_EXT:thymine_nucleobase_or_nucleoside_or_nucleotide_molecular_entity_or_group denotes thymine
T7605 39-58 CHEBI_SO_EXT:single_stranded_DNA denotes single-stranded DNA
T7606 113-116 GO:0042555 denotes Mcm
T7607 117-125 GO_EXT:0004386 denotes helicase
T7608 160-167 CHEBI_EXT:thymine_nucleobase_or_nucleoside_or_nucleotide_molecular_entity_or_group denotes thymine
T7609 168-177 SO_EXT:biological_sequence denotes sequences
T7610 206-229 GO:0032508 denotes unwinding of duplex DNA
T7611 219-229 CHEBI_SO_EXT:double_stranded_DNA denotes duplex DNA
T7612 271-281 CHEBI_SO_EXT:nucleotide denotes nucleotide
T7613 301-307 SO:0000985 denotes duplex
T7614 408-412 GO:0005657 denotes fork
T7615 427-431 GO:0005657 denotes fork
T7616 452-461 SO_EXT:biological_sequence denotes sequences
T7617 469-475 SO:0000985 denotes duplex
T7618 517-525 CHEBI_EXT:cytosine_nucleobase_or_nucleoside_or_nucleotide_molecular_entity_or_group denotes cytosine
T7619 526-534 CHEBI_EXT:residue denotes residues
T7620 579-583 PR_EXT:000010246 denotes Mcm4
T7621 579-587 GO:0097373 denotes Mcm4/6/7
T7622 588-593 CHEMINF_GO_EXT:chemical_binding_or_bond_formation denotes bound
T7623 605-609 GO:0005657 denotes fork
T7624 694-698 PR_EXT:000010246 denotes Mcm4
T7625 694-702 GO:0097373 denotes Mcm4/6/7
T7626 703-708 CHEMINF_GO_EXT:chemical_binding_or_bond_formation denotes binds
T7627 712-727 SO:0000984 denotes single-stranded
T7628 747-750 CHEBI_SO_EXT:DNA denotes DNA
T7629 747-759 GO_EXT:0003678 denotes DNA helicase
T7630 770-774 GO:0005657 denotes fork
T7631 807-811 PR_EXT:000010246 denotes Mcm4
T7632 807-815 GO:0097373 denotes Mcm4/6/7
T7633 846-850 NCBITaxon:10633 denotes SV40
T7634 853-860 CHEBI_EXT:59132 denotes antigen
T7635 861-864 CHEBI_SO_EXT:DNA denotes DNA
T7636 861-873 GO_EXT:0003678 denotes DNA helicase
T7637 892-899 CHEBI_EXT:thymine_nucleobase_or_nucleoside_or_nucleotide_molecular_entity_or_group denotes thymine
T7638 903-910 CHEBI_EXT:adenine_nucleobase_or_nucleoside_or_nucleotide_molecular_entity_or_group denotes adenine
T7639 914-922 SO_EXT:sequence_insertion_process denotes inserted
T7640 938-948 CHEBI_SO_EXT:nucleotide denotes nucleotide
T7641 950-957 SO_EXT:sequence_repeat_unit_or_region denotes repeats
T7642 1011-1015 GO:0005657 denotes fork
T7643 1034-1038 GO:0005657 denotes fork
T7644 1139-1145 SO:0000985 denotes duplex
T7645 1157-1161 GO:0005657 denotes fork
T7646 1179-1183 GO:0005657 denotes fork
T7647 1201-1205 GO:0005657 denotes fork
T7648 1226-1230 GO:0005657 denotes fork
T7649 1278-1284 SO:0000985 denotes duplex

craft-ca-core-dev

Below, discontinuous spans are shown in the chain model. You can change it to the bag model.

Id Subject Object Predicate Lexical cue
T7533 39-54 SO:0000984 denotes single-stranded
T7534 113-116 GO:0042555 denotes Mcm
T7535 206-229 GO:0032508 denotes unwinding of duplex DNA
T7536 219-225 SO:0000985 denotes duplex
T7537 301-307 SO:0000985 denotes duplex
T7538 408-412 GO:0005657 denotes fork
T7539 427-431 GO:0005657 denotes fork
T7540 469-475 SO:0000985 denotes duplex
T7541 579-583 PR:000010246 denotes Mcm4
T7542 579-587 GO:0097373 denotes Mcm4/6/7
T7543 605-609 GO:0005657 denotes fork
T7544 694-698 PR:000010246 denotes Mcm4
T7545 694-702 GO:0097373 denotes Mcm4/6/7
T7546 712-727 SO:0000984 denotes single-stranded
T7547 770-774 GO:0005657 denotes fork
T7548 807-811 PR:000010246 denotes Mcm4
T7549 807-815 GO:0097373 denotes Mcm4/6/7
T7550 846-850 NCBITaxon:10633 denotes SV40
T7551 853-860 CHEBI:59132 denotes antigen
T7552 1011-1015 GO:0005657 denotes fork
T7553 1034-1038 GO:0005657 denotes fork
T7554 1139-1145 SO:0000985 denotes duplex
T7555 1157-1161 GO:0005657 denotes fork
T7556 1179-1183 GO:0005657 denotes fork
T7557 1201-1205 GO:0005657 denotes fork
T7558 1226-1230 GO:0005657 denotes fork
T7559 1278-1284 SO:0000985 denotes duplex