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PMC:1134658 / 12078-12210 JSONTXT

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pmc-enju-pas

Id Subject Object Predicate Lexical cue
T8059 0-11 RB denotes Furthermore
T8060 11-12 -COMMA- denotes ,
T8061 13-16 DT denotes the
T8062 17-22 NN denotes BMP-6
T8063 23-30 VB denotes induced
T8064 31-35 NN denotes Smad
T8065 36-51 NN denotes phosphorylation
T8066 52-55 VB denotes was
T8067 56-64 VB denotes followed
T8068 65-67 IN denotes by
T8069 68-69 DT denotes a
T8070 70-79 JJ denotes selective
T8071 80-92 NN denotes upregulation
T8072 93-95 IN denotes of
T8073 96-99 NN denotes Id1
T8074 100-104 NN denotes mRNA
T8075 105-108 CC denotes and
T8076 109-119 JJ denotes subsequent
T8077 120-123 NN denotes Id1
T8078 124-131 NN denotes protein
R6065 T8063 T8062 arg1Of induced,BMP-6
R6066 T8065 T8061 arg1Of phosphorylation,the
R6067 T8065 T8063 arg1Of phosphorylation,induced
R6068 T8065 T8064 arg1Of phosphorylation,Smad
R6069 T8065 T8066 arg1Of phosphorylation,was
R6070 T8065 T8067 arg2Of phosphorylation,followed
R6071 T8067 T8059 arg1Of followed,Furthermore
R6072 T8067 T8060 arg1Of followed,","
R6073 T8067 T8066 arg2Of followed,was
R6074 T8071 T8067 arg1Of upregulation,followed
R6075 T8071 T8068 arg2Of upregulation,by
R6076 T8071 T8069 arg1Of upregulation,a
R6077 T8071 T8070 arg1Of upregulation,selective
R6078 T8071 T8072 arg1Of upregulation,of
R6079 T8074 T8073 arg1Of mRNA,Id1
R6080 T8074 T8075 arg1Of mRNA,and
R6081 T8075 T8072 arg2Of and,of
R6082 T8078 T8075 arg2Of protein,and
R6083 T8078 T8076 arg1Of protein,subsequent
R6084 T8078 T8077 arg1Of protein,Id1

bionlp-st-ge-2016-spacy-parsed

Id Subject Object Predicate Lexical cue
T10426 0-11 RB denotes Furthermore
T10427 11-12 , denotes ,
T10428 13-16 DT denotes the
T10429 17-22 NNP denotes BMP-6
T10430 23-30 VBD denotes induced
T10431 31-35 NNP denotes Smad
T10432 36-51 NN denotes phosphorylation
T10433 52-55 VBD denotes was
T10434 56-64 VBN denotes followed
T10435 65-67 IN denotes by
T10436 68-69 DT denotes a
T10437 70-79 JJ denotes selective
T10438 80-92 NN denotes upregulation
T10439 93-95 IN denotes of
T10440 96-99 NNP denotes Id1
T10441 100-104 NNP denotes mRNA
T10442 105-108 CC denotes and
T10443 109-119 JJ denotes subsequent
T10444 120-123 JJ denotes Id1
T10445 124-131 NN denotes protein
T10446 131-132 . denotes .
R7973 T10426 T10430 advmod Furthermore,induced
R7974 T10427 T10430 punct ",",induced
R7976 T10428 T10429 det the,BMP-6
R7977 T10429 T10430 nsubj BMP-6,induced
R7979 T10430 T10430 ROOT induced,induced
R7980 T10431 T10432 compound Smad,phosphorylation
R7981 T10432 T10434 nsubjpass phosphorylation,followed
R7983 T10433 T10434 auxpass was,followed
R7984 T10434 T10430 advcl followed,induced
R7985 T10435 T10434 agent by,followed
R7987 T10436 T10438 det a,upregulation
R7988 T10437 T10438 amod selective,upregulation
R7989 T10438 T10435 pobj upregulation,by
R7991 T10439 T10438 prep of,upregulation
R7992 T10440 T10441 compound Id1,mRNA
R7993 T10441 T10439 pobj mRNA,of
R7994 T10442 T10441 cc and,mRNA
R7997 T10443 T10445 amod subsequent,protein
R7998 T10444 T10445 amod Id1,protein
R8000 T10445 T10438 conj protein,upregulation
R8001 T10446 T10434 punct .,followed

GO-BP

Id Subject Object Predicate Lexical cue
T7886 36-51 http://purl.obolibrary.org/obo/GO_0016310 denotes phosphorylation

sentences

Id Subject Object Predicate Lexical cue
T7811 0-132 Sentence denotes Furthermore, the BMP-6 induced Smad phosphorylation was followed by a selective upregulation of Id1 mRNA and subsequent Id1 protein.
T99 0-132 Sentence denotes Furthermore, the BMP-6 induced Smad phosphorylation was followed by a selective upregulation of Id1 mRNA and subsequent Id1 protein.

events-check-again

Id Subject Object Predicate Lexical cue
T12979 17-22 Protein denotes BMP-6
T12980 23-30 Positive_regulation denotes induced
T12981 31-35 Protein denotes Smad
T12982 36-51 Phosphorylation denotes phosphorylation
T12983 56-64 Positive_regulation denotes followed
T12984 56-64 Positive_regulation denotes followed
T12985 80-92 Positive_regulation denotes upregulation
T12986 80-92 Positive_regulation denotes upregulation
T12987 96-99 Protein denotes Id1
T12988 120-123 Protein denotes Id1
R10203 T12979 T12980 causeOf BMP-6,induced
R10205 T12981 T12982 themeOf Smad,phosphorylation
R10206 T12982 T12980 themeOf phosphorylation,induced
R10207 T12982 T12983 causeOf phosphorylation,followed
R10208 T12982 T12984 causeOf phosphorylation,followed
R10209 T12985 T12983 themeOf upregulation,followed
R10210 T12986 T12984 themeOf upregulation,followed
R10211 T12987 T12985 themeOf Id1,upregulation
R10213 T12988 T12986 themeOf Id1,upregulation

bionlp-st-ge-2016-reference-tees

Id Subject Object Predicate Lexical cue
T12312 17-22 Protein denotes BMP-6
T12313 23-30 Positive_regulation denotes induced
T12314 31-35 Protein denotes Smad
T12315 36-51 Phosphorylation denotes phosphorylation
T12316 56-64 Positive_regulation denotes followed
T12317 80-92 Positive_regulation denotes upregulation
T12318 80-92 Positive_regulation denotes upregulation
T12319 96-104 Protein denotes Id1 mRNA
T12320 120-131 Protein denotes Id1 protein
R9785 T12312 T12313 causeOf BMP-6,induced
R9832 T12314 T12315 themeOf Smad,phosphorylation
R9835 T12315 T12316 themeOf phosphorylation,followed
R9839 T12315 T12313 themeOf phosphorylation,induced
R9841 T12319 T12317 themeOf Id1 mRNA,upregulation
R9845 T12320 T12318 themeOf Id1 protein,upregulation

bionlp-st-ge-2016-reference

Id Subject Object Predicate Lexical cue
T7583 17-22 Protein denotes BMP-6
T7584 23-30 Positive_regulation denotes induced
T7585 31-35 Protein denotes Smad
T7586 36-51 Phosphorylation denotes phosphorylation
T7587 56-64 Positive_regulation denotes followed
T7588 56-64 Positive_regulation denotes followed
T7589 80-92 Positive_regulation denotes upregulation
T7590 80-92 Positive_regulation denotes upregulation
T7591 96-99 Protein denotes Id1
T7592 120-123 Protein denotes Id1
R5834 T7583 T7584 causeOf BMP-6,induced
R5835 T7585 T7586 themeOf Smad,phosphorylation
R5836 T7586 T7584 themeOf phosphorylation,induced
R5837 T7586 T7587 causeOf phosphorylation,followed
R5838 T7586 T7588 causeOf phosphorylation,followed
R5839 T7589 T7587 themeOf upregulation,followed
R5840 T7590 T7588 themeOf upregulation,followed
R5841 T7591 T7589 themeOf Id1,upregulation
R5842 T7592 T7590 themeOf Id1,upregulation

bionlp-st-ge-2016-uniprot

Id Subject Object Predicate Lexical cue
T9852 17-20 P12643 denotes BMP
T9853 17-20 P12644 denotes BMP
T9854 17-20 P18075 denotes BMP
T9855 17-20 P22004 denotes BMP
T9856 17-22 P22004 denotes BMP-6
T9857 96-99 P41134 denotes Id1
T9858 120-123 P41134 denotes Id1

test2

Id Subject Object Predicate Lexical cue
T7373 17-22 Protein denotes BMP-6
T7374 23-30 Positive_regulation denotes induced
T7375 31-35 Protein denotes Smad
T7376 36-51 Phosphorylation denotes phosphorylation
T7377 56-64 Positive_regulation denotes followed
T7378 80-92 Positive_regulation denotes upregulation
T7379 96-99 Protein denotes Id1
T7380 120-123 Protein denotes Id1
R5732 T7373 T7374 causeOf BMP-6,induced
R5733 T7375 T7376 themeOf Smad,phosphorylation
R5734 T7376 T7377 causeOf phosphorylation,followed
R5735 T7376 T7374 themeOf phosphorylation,induced
R5736 T7378 T7377 themeOf upregulation,followed
R5737 T7379 T7378 themeOf Id1,upregulation
R5738 T7380 T7378 themeOf Id1,upregulation

tees-test

Id Subject Object Predicate Lexical cue
T1417 17-22 D055418 denotes BMP-6
T1418 17-22 D055418 denotes BMP-6
T1419 17-22 Q04906 denotes BMP-6
T1420 17-22 PR:000000167 denotes BMP-6
T1421 17-22 P20722 denotes BMP-6
T1422 17-22 PR:Q04906 denotes BMP-6
T1423 17-22 P22004 denotes BMP-6
T1424 17-22 PR:P22004 denotes BMP-6
T1425 17-22 PR:P20722 denotes BMP-6
T1426 36-51 GO:0016310 denotes phosphorylation
T1427 96-99 PR:P41134 denotes Id1
T1428 96-99 PR:P20067 denotes Id1
T1429 96-99 PR:P41135 denotes Id1
T1430 96-99 PR:000000039 denotes Id1
T1431 100-104 D012333 denotes mRNA
T1432 100-104 CHEBI:33699 denotes mRNA
T1433 100-104 SO:0000234 denotes mRNA
T1434 120-123 PR:P41134 denotes Id1
T1435 120-123 PR:P20067 denotes Id1
T1436 120-123 PR:P41135 denotes Id1
T1437 120-123 PR:000000039 denotes Id1
T1438 124-131 CHEBI:36080 denotes protein
T1439 124-131 CHEBI:11122 denotes protein
T1440 124-131 PR:000000001 denotes protein
T1441 124-131 SO:0000104 denotes protein
T1442 124-131 GO:0003675 denotes protein