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PMC:1064873 / 6880-7088 JSONTXT

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LappsTest

Id Subject Object Predicate Lexical cue
T2245 100-104 Protein denotes CD4+
T2244 64-74 Protein denotes SOCS3 mRNA
T2243 54-59 Protein denotes SOCS1
T2242 25-30 Protein denotes IL-10
T2241 0-5 Protein denotes STAT3

biosemtest

Id Subject Object Predicate Lexical cue
T6845 168-175 UMLS/C2347026 denotes samples
T6836 168-175 UMLS/C0870078 denotes samples
T6830 180-204 UMLS/C2361270 denotes total patient population
T6809 155-163 UMLS/C1705908 denotes Patients
T6751 155-163 UMLS/C1550655 denotes Patients
T6736 168-175 UMLS/C0441621 denotes samples
T6696 168-175 UMLS/C0370003 denotes samples
T6671 155-163 UMLS/C0030705 denotes Patients
T6656 155-163 UMLS/C1578479 denotes Patients
T6647 155-163 UMLS/C1578483 denotes Patients
T6635 155-163 UMLS/C1578480 denotes Patients
T6626 155-163 UMLS/C1578481 denotes Patients
T6617 155-163 UMLS/C1578486 denotes Patients
T6608 155-163 UMLS/C1578484 denotes Patients
T6599 155-163 UMLS/C1578485 denotes Patients
T2974 32-37 UMLS/C0085295 denotes and t
T2938 13-28 UMLS/C0031715 denotes rylation by IL-
T2821 7-12 UMLS/C1367307 denotes hosph
T2773 7-12 UMLS/C0253050 denotes hosph
T2703 85-101 UMLS/C0229664 denotes ral blood (PB) C
T2695 32-37 UMLS/C1149215 denotes and t
T2657 47-57 UMLS/C0185117 denotes ion of SOC
T3207 71-76 UMLS/C1426212 denotes RNA i
T3185 61-66 UMLS/C1426208 denotes nd SO
T3129 112-119 UMLS/C0039194 denotes from R
T2602 32-37 UMLS/C1522550 denotes and t
T2588 32-37 UMLS/C1334098 denotes and t
T2520 47-57 UMLS/C0017262 denotes ion of SOC
T2459 77-81 UMLS/C0035696 denotes per

pmc-enju-pas

Id Subject Object Predicate Lexical cue
T6879 194-204 NN denotes population
T6878 186-193 NN denotes patient
T6877 180-185 JJ denotes total
T6876 176-179 DT denotes The
T6875 168-175 NN denotes samples
T6874 164-167 CC denotes and
T6873 155-163 NN denotes Patients
T4812 121-129 NN denotes patients
T4811 118-120 NN denotes RA
T4810 113-117 IN denotes from
T4809 107-112 NN denotes cells
T4808 105-106 NN denotes T
T4807 100-104 JJ denotes CD4+
T4806 98-99 -RRB- denotes )
T4805 96-98 NN denotes PB
T4804 95-96 -LRB- denotes (
T4803 89-94 NN denotes blood
T4802 78-88 JJ denotes peripheral
T4801 75-77 IN denotes in
T4800 70-74 NN denotes mRNA
T4799 64-69 NN denotes SOCS3
T4798 60-63 CC denotes and
T4797 54-59 NN denotes SOCS1
T4796 51-53 IN denotes of
T4795 40-50 NN denotes expression
T4794 36-39 DT denotes the
T4793 32-35 CC denotes and
T4792 30-31 -COMMA- denotes ,
T4791 25-30 NN denotes IL-10
T4790 22-24 IN denotes by
T4789 6-21 NN denotes phosphorylation
T4788 0-5 NN denotes STAT3
R1936 T4789 T4788 arg1Of phosphorylation,STAT3
R1938 T4791 T4790 arg2Of IL-10,by
R1941 T4793 T4792 arg1Of and,","
R1942 T4795 T4793 arg2Of expression,and
R1944 T4795 T4794 arg1Of expression,the
R1946 T4795 T4796 arg1Of expression,of
R1947 T4795 T4801 arg1Of expression,in
R1949 T4795 T4810 arg1Of expression,from
R1950 T4797 T4798 arg1Of SOCS1,and
R1953 T4799 T4798 arg2Of SOCS3,and
R1956 T4800 T4796 arg2Of mRNA,of
R1958 T4800 T4797 arg1Of mRNA,SOCS1
R1959 T4800 T4799 arg1Of mRNA,SOCS3
R1961 T4805 T4804 arg2Of PB,(
R1963 T4806 T4804 arg3Of ),(
R1964 T4809 T4801 arg2Of cells,in
R1965 T4809 T4802 arg1Of cells,peripheral
R1966 T4809 T4803 arg1Of cells,blood
R1967 T4809 T4804 arg1Of cells,(
R1969 T4809 T4807 arg1Of cells,CD4+
R1970 T4809 T4808 arg1Of cells,T
R1972 T4812 T4810 arg2Of patients,from
R1975 T4812 T4811 arg1Of patients,RA
R3193 T6873 T6874 arg1Of Patients,and
R3194 T6875 T6874 arg2Of samples,and
R3195 T6879 T6876 arg1Of population,The
R3196 T6879 T6877 arg1Of population,total
R3197 T6879 T6878 arg1Of population,patient

bionlp-st-ge-2016-test-proteins

Id Subject Object Predicate Lexical cue
T3536 100-103 Protein denotes CD4
T3535 64-69 Protein denotes SOCS3
T3534 54-59 Protein denotes SOCS1
T3533 25-30 Protein denotes IL-10
T3532 0-5 Protein denotes STAT3

bionlp-st-ge-2016-uniprot

Id Subject Object Predicate Lexical cue
T3698 0-5 http://www.uniprot.org/uniprot/P40763 denotes STAT3
T3689 25-30 http://www.uniprot.org/uniprot/P22301 denotes IL-10
T3864 54-59 http://www.uniprot.org/uniprot/O15524 denotes SOCS1
T3847 100-103 http://www.uniprot.org/uniprot/P01730 denotes CD4

UBERON-AE

Id Subject Object Predicate Lexical cue
T2429 89-94 http://purl.obolibrary.org/obo/UBERON_0000178 denotes blood

GO-BP

Id Subject Object Predicate Lexical cue
T3274 6-21 http://purl.obolibrary.org/obo/GO_0016310 denotes phosphorylation

GO-CC

Id Subject Object Predicate Lexical cue
T3592 107-112 http://purl.obolibrary.org/obo/GO_0005623 denotes cells

GO-MF

Id Subject Object Predicate Lexical cue
T3551 25-30 http://purl.obolibrary.org/obo/GO_0005141 denotes IL-10

sentences

Id Subject Object Predicate Lexical cue
T6856 155-175 Sentence denotes Patients and samples
T36 132-153 Sentence denotes Materials and methods
T37 155-175 Sentence denotes Patients and samples

simple1

Id Subject Object Predicate Lexical cue
T3939 100-103 Protein denotes CD4
T3938 64-69 Protein denotes SOCS3
T3937 54-59 Protein denotes SOCS1
T3936 25-30 Protein denotes IL-10
T3935 0-5 Protein denotes STAT3

BioNLP16_DUT

Id Subject Object Predicate Lexical cue
T6472 40-50 Gene_expression denotes expression
T6449 100-103 Protein denotes CD4
T6448 64-69 Protein denotes SOCS3
T6447 54-59 Protein denotes SOCS1
T6446 25-30 Protein denotes IL-10
T6445 0-5 Protein denotes STAT3
T6474 6-21 Phosphorylation denotes phosphorylation
R3178 T6445 T6474 themeOf STAT3,phosphorylation
R3183 T6447 T6472 themeOf SOCS1,expression
R3184 T6448 T6472 themeOf SOCS3,expression

BioNLP16_Messiy

Id Subject Object Predicate Lexical cue
T4913 40-50 Gene_expression denotes expression
T4911 6-21 Phosphorylation denotes phosphorylation
T4887 100-103 Protein denotes CD4
T4886 64-69 Protein denotes SOCS3
T4885 54-59 Protein denotes SOCS1
T4884 25-30 Protein denotes IL-10
T4883 0-5 Protein denotes STAT3
R1951 T4883 T4911 themeOf STAT3,phosphorylation
R1960 T4885 T4913 themeOf SOCS1,expression
R1962 T4886 T4913 themeOf SOCS3,expression

DLUT931

Id Subject Object Predicate Lexical cue
T5933 40-50 Gene_expression denotes expression
T5932 6-21 Phosphorylation denotes phosphorylation
T5899 100-103 Protein denotes CD4
T5898 64-69 Protein denotes SOCS3
T5897 54-59 Protein denotes SOCS1
T5896 25-30 Protein denotes IL-10
T5895 0-5 Protein denotes STAT3
R2938 T5895 T5932 themeOf STAT3,phosphorylation
R2944 T5897 T5933 themeOf SOCS1,expression
R2945 T5898 T5933 themeOf SOCS3,expression

bionlp-st-ge-2016-test-ihmc

Id Subject Object Predicate Lexical cue
T6284 0-5 Protein denotes STAT3
T6181 113-120 Protein denotes from RA
T6223 64-69 Protein denotes SOCS3
T6280 22-30 Protein denotes by IL-10
T6266 105-112 Entity denotes T cells
T6261 54-59 Protein denotes SOCS1
T6328 100-103 Protein denotes CD4
T6324 96-98 Protein denotes PB
T6367 36-69 Gene_expression denotes the expression of SOCS1 and SOCS3
T6366 36-69 Gene_expression denotes the expression of SOCS1 and SOCS3
R3112 T6223 T6366 themeOf SOCS3,the expression of SOCS1 and SOCS3
R3116 T6261 T6367 themeOf SOCS1,the expression of SOCS1 and SOCS3

bionlp-st-ge-2016-spacy-parsed

Id Subject Object Predicate Lexical cue
T7087 194-204 NN denotes population
T7086 186-193 JJ denotes patient
T7085 180-185 JJ denotes total
T7084 176-179 DT denotes The
T7083 168-175 NNS denotes samples
T7082 164-167 CC denotes and
T7081 155-163 NNS denotes Patients
T5824 129-130 . denotes .
T5823 121-129 NNS denotes patients
T5822 118-120 NNP denotes RA
T5821 113-117 IN denotes from
T5820 107-112 NNS denotes cells
T5819 105-106 NNP denotes T
T5818 103-104 CD denotes +
T5817 100-103 NNP denotes CD4
T5816 98-99 -RRB- denotes )
T5815 96-98 NNP denotes PB
T5814 95-96 -LRB- denotes (
T5813 89-94 NN denotes blood
T5812 78-88 JJ denotes peripheral
T5811 75-77 IN denotes in
T5810 70-74 NNP denotes mRNA
T5809 64-69 CD denotes SOCS3
T5808 60-63 CC denotes and
T5807 54-59 CD denotes SOCS1
T5806 51-53 IN denotes of
T5805 40-50 NN denotes expression
T5804 36-39 DT denotes the
T5803 32-35 CC denotes and
T5802 30-31 , denotes ,
T5801 25-30 NNP denotes IL-10
T5800 22-24 IN denotes by
T5799 6-21 NN denotes phosphorylation
T5798 0-5 CD denotes STAT3
R2829 T5806 T5805 prep of,expression
R2835 T5807 T5806 pobj SOCS1,of
R2840 T5808 T5807 cc and,SOCS1
R2847 T5809 T5807 conj SOCS3,SOCS1
R2851 T5810 T5805 appos mRNA,expression
R2856 T5811 T5799 prep in,phosphorylation
R2859 T5812 T5813 amod peripheral,blood
R2864 T5813 T5811 pobj blood,in
R2867 T5814 T5815 punct (,PB
R2872 T5798 T5799 nummod STAT3,phosphorylation
R2874 T5800 T5799 prep by,phosphorylation
R2875 T5816 T5815 punct ),PB
R2876 T5801 T5800 pobj IL-10,by
R2877 T5802 T5799 punct ",",phosphorylation
R2878 T5803 T5799 cc and,phosphorylation
R2879 T5817 T5820 nsubj CD4,cells
R2880 T5804 T5805 det the,expression
R2881 T5805 T5799 conj expression,phosphorylation
R2882 T5818 T5820 nummod +,cells
R2883 T5819 T5820 compound T,cells
R2884 T5820 T5820 ROOT cells,cells
R2885 T5821 T5820 prep from,cells
R2887 T5822 T5823 compound RA,patients
R2889 T5823 T5821 pobj patients,from
R2894 T5824 T5820 punct .,cells
R3398 T7081 T7081 ROOT Patients,Patients
R3399 T7082 T7081 cc and,Patients
R3400 T7083 T7081 conj samples,Patients
R3401 T7084 T7087 det The,population
R3402 T7085 T7087 amod total,population
R3403 T7086 T7087 amod patient,population

bionlp-st-ge-2016-test-tees

Id Subject Object Predicate Lexical cue
T3828 40-50 Gene_expression denotes expression
T3827 40-50 Gene_expression denotes expression
T3826 6-21 Phosphorylation denotes phosphorylation
T3825 6-21 Phosphorylation denotes phosphorylation
T3819 64-74 Protein denotes SOCS3 mRNA
T3818 54-59 Protein denotes SOCS1
T3817 25-30 Protein denotes IL-10
T3816 0-5 Protein denotes STAT3
R1011 T3816 T3826 themeOf STAT3,phosphorylation
R1016 T3818 T3827 themeOf SOCS1,expression
R1017 T3819 T3828 themeOf SOCS3 mRNA,expression

test3

Id Subject Object Predicate Lexical cue
T2255 100-103 Protein denotes CD4
T2254 64-69 Protein denotes SOCS3
T2253 54-59 Protein denotes SOCS1
T2252 25-30 Protein denotes IL-10
T2251 0-5 Protein denotes STAT3
T2426 100-103 Protein denotes CD4
T2425 64-69 Protein denotes SOCS3
T2424 54-59 Protein denotes SOCS1
T2423 40-50 Gene_expression denotes expression
T2422 25-30 Protein denotes IL-10
T2421 6-21 Phosphorylation denotes phosphorylation
T2420 0-5 Protein denotes STAT3
R824 T2420 T2421 themeOf STAT3,phosphorylation
R827 T2424 T2423 themeOf SOCS1,expression
R828 T2425 T2423 themeOf SOCS3,expression

testone

Id Subject Object Predicate Lexical cue
T2174 40-50 Gene_expression denotes expression
T2173 6-21 Phosphorylation denotes phosphorylation
T2145 100-103 Protein denotes CD4
T2144 64-69 Protein denotes SOCS3
T2143 54-59 Protein denotes SOCS1
T2142 25-30 Protein denotes IL-10
T2141 0-5 Protein denotes STAT3
R755 T2141 T2173 themeOf STAT3,phosphorylation
R757 T2143 T2174 themeOf SOCS1,expression
R758 T2144 T2174 themeOf SOCS3,expression