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Annotators

Below is a list of pre-registered, automatic annotation services which are interoperable with PubAnnotation.

If you do not know an applicable annotation service to your purpose, you may want to take a look at PubDictionaries, which is a highly customizable, dictionary-based text annotation service.

NameDescriptionMaintainerUpdated_at

41-60 / 77 show all
PD-ORYZAGP-UNIPROT-B use dictionary of rice gene mentions with UniProt Urislarmande2021-01-29
PD-ORYZAGP Annotator based on PubDictionary OryzaGP Oryzabase URIlarmande2021-01-26
PD-ORYZAGP-B larmande2021-01-26
PD-ORYZAGP-MSU-B Annotator created with OryzaGP and MSU URI in Batch modelarmande2021-01-22
PD-ORYZAGP-MSU Annotator created with OryzaGP dataset and MSU URIlarmande2021-01-22
PD-ORYZAGP-RAPDB-B annotator based on OryzaGP_RAPDB pub dictionary with batchlarmande2021-01-22
OGER-TEXT At the moment, please don't send too much frequence requests.Jin-Dong Kim2021-01-20
GlyCosmosGlycans kiyoko2021-01-19
GlycanIUPAC http://pubdictionaries.org/dictionaries/GlyTouCan-IUPAC_condensedkiyoko2021-01-19
PD-GO-BP-B Biological Processes as defined in GOJin-Dong Kim2021-01-14
EnjuParser Enju HPSG Parser developed by University of Tokyo.Jin-Dong Kim2020-12-31
PD-MONDO-B PubDictionaries annotation with the MONDO dictionary. Asynchronous protocol.Jin-Dong Kim2020-12-23
FirstAuthorDictionay AikoHIRAKI2020-10-08
Cellosaurus_v35 Annotator based on dictionary Cellosaurus version 35 in PubDictionarieszebet2020-08-12
PD-HP Jin-Dong Kim2020-06-23
PD-HP-B Jin-Dong Kim2020-04-28
PubTator PubTator annotation provided by NCBIJin-Dong Kim2020-04-15
Cellosaurus_v33 Annotator based on dictionary Cellosaurus version 33 in PubDictionarieszebet2020-04-15
PD-Preeclampsia-B Jin-Dong Kim2020-04-04
PD-NGLY1-deficiency-B A batch annotator for NGLY1 deficiencyJin-Dong Kim2020-04-04
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