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Annotators

Below is a list of pre-registered, automatic annotation services which are interoperable with PubAnnotation.

If you do not know an applicable annotation service to your purpose, you may want to take a look at PubDictionaries, which is a highly customizable, dictionary-based text annotation service.

Name DescriptionMaintainerUpdated_at

21-40 / 76 show all
PD_CHEBI_minus_symbols-B CHEBI manually tunedyucca2021-12-23
PD-CLO-B Jin-Dong Kim2021-10-22
PD-FMA-PAE Physical Anatomical Entities from FMAJin-Dong Kim2021-07-08
PD-FMA-PAE-B Batch mode annotator of PD-FMA-PAEJin-Dong Kim2022-04-18
PD-GlycanStructures-B Jin-Dong Kim2020-04-04
PD-GlycoEpitope-B A batch annotator using PubDictionaries with the dictionary 'GlycoEpitope'Jin-Dong Kim2021-10-04
PD-GlycoGenes20190927-B Jin-Dong Kim2021-12-17
PD-GlycoGenes-B Jin-Dong Kim2020-04-04
PD-GlycoProteins-B Jin-Dong Kim2020-04-04
PD-GO-BP-B Biological Processes as defined in GOJin-Dong Kim2021-01-14
PD-HP Jin-Dong Kim2020-06-23
PD-HP-B Jin-Dong Kim2020-04-28
PD-HP-PA Jin-Dong Kim2021-11-01
PD-HP-PA-B Jin-Dong Kim2021-07-08
PD-MeSH2022_C_and_F03-B MeSH 2022 Disease (C) + Mental Disorder (F03)yucca2021-12-22
PD-MeSH2022_C_and_F03_plus_FN-B MeSH C and F03 terms + FNs of PD_MeSH2022_C_and_F03-B that appear in two or more documentsyucca2021-12-22
PD-MeSH2022_C_F03_plus_allFN-B MeSH2022 C and F03, plus all false negativesyucca2021-12-22
PD-MeSH2022_CHEBI_tuned-B MeSH2022Chemical (Descriptors and Supplementary Concepts that have Tree Numbers beginning with D but not not D12, D13 or D17)+ CHEBI (excluding terms that match (\W|\d)*|\W*\w\W* , manually tuned yucca2021-12-23
PD-MONDO PubDictionaries annotation with the MONDO dictionary.Jin-Dong Kim2021-10-31
PD-MONDO-B PubDictionaries annotation with the MONDO dictionary. Asynchronous protocol.Jin-Dong Kim2020-12-23
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