> ホーム > プロジェクト

プロジェクト

NameTDescription# Ann.AuthorMaintainerUpdated_atStatus

41-60 / 352 すべて表示
LocTextThe manually annotated corpus consists of 100 PubMed abstracts annotated for proteins, subcellular localizations, organisms and relations between them. The focus of the corpus is on annotation of proteins and their subcellular localizations.2.29 KGoldberg et alShrikant Vinchurkar2020-02-01公開中
PIR-corpus2The protein tag was used to tag proteins, or protein-associated or -related objects, such as domains, pathways, expression of gene. Annotation guideline: http://pir.georgetown.edu/pirwww/about/doc/manietal.pdf5.52 KUniversity of Delaware and Georgetown University Medical CenterYue Wang2020-02-01公開中
BioLarkPubmedHPO228 abstracts manually annotated with Human Phenotype Ontology (HPO) concepts and harmonized by three curators, which can be used as a reference standard for free text annotation of human phenotypes. For more info, please see Groza et al. "Automatic concept recognition using the human phenotype ontology reference and test suite corpora", 2015.7.24 KTudor Grozasimon2020-02-01公開中
DisGeNET5_variant_diseaseThe file contains variant-disease associations obtained by text mining MEDLINE abstracts using the BeFree system, including the variant and disease off sets. 144 KIBI GroupYue Wang2020-02-01公開中
DisGeNET5_gene_diseaseThe file contains gene-disease associations obtained by text mining MEDLINE abstracts using the BeFree system including the gene and disease off sets.2.04 MIBI GroupYue Wang2020-02-02公開中
GENIAcorpus multi_cell (1,782) mono_cell (222) virus (2,136) protein_family_or_group (8,002) protein_complex (2,394) protein_molecule (21,290) protein_subunit (942) protein_substructure (129) protein_domain_or_region (1,044) protein_other (97) peptide (521) amino_acid_monomer (784) DNA_family_or_group (332) DNA_molecule (664) DNA_substructure (2) DNA_domain_or_region (39) DNA_other (16) RNA_family_or_group (1,545) RNA_molecule (554) RNA_substructure (106) RNA_domain_or_region (8,237) RNA_other (48) polynucleotide (259) nucleotide (243) lipid (2,375) carbohydrate (99) other_organic_compound (4,113) body_part (461) tissue (706) cell_type (7,473) cell_component (679) cell_line (4,129) other_artificial_source (211) inorganic (258) atom (342) other (21,056) 79.2 KGENIA ProjectYue Wang2020-02-02公開中
SPECIES800SPECIES 800 (S800): an abstract-based manually annotated corpus. S800 comprises 800 PubMed abstracts in which organism mentions were identified and mapped to the corresponding NCBI Taxonomy identifiers. Described in: The SPECIES and ORGANISMS Resources for Fast and Accurate Identification of Taxonomic Names in Text. Pafilis E, Frankild SP, Fanini L, Faulwetter S, Pavloudi C, et al. (2013). PLoS ONE, 2013, 8(6): e65390. doi:10.1371/journal.pone.00653903.71 KEvangelos Pafilis, Sune P. Frankild, Lucia Fanini, Sarah Faulwetter, Christina Pavloudi, Aikaterini Vasileiadou, Christos Arvanitidis, Lars Juhl Jensenevangelos2020-02-02公開中
jnlpba-st-trainingThe training data used in the task came from the GENIA version 3.02 corpus, This was formed from a controlled search on MEDLINE using the MeSH terms "human", "blood cells" and "transcription factors". From this search, 1,999 abstracts were selected and hand annotated according to a small taxonomy of 48 classes based on a chemical classification. Among the classes, 36 terminal classes were used to annotate the GENIA corpus. For the shared task only the classes protein, DNA, RNA, cell line and cell type were used. The first three incorporate several subclasses from the original taxonomy while the last two are interesting in order to make the task realistic for post-processing by a potential template filling application. The publication year of the training set ranges over 1990~1999.51.3 KGENIAYue Wang2020-02-02公開中
GoldHamster1_DevelopmentDevelopment data for the GoldHamster1 corpus. It contain annotations for the proposed methods in abstracts.02020-02-25公開中
GoldHamster1_TestTest data for the GoldHamster1 corpus. It contain annotations for the proposed methods in abstracts.02020-02-25公開中
Goldhamster1_TrainTraining data for the GoldHamster1 corpus. It contain annotations for the proposed methods in abstracts.02020-02-25公開中
GoldHamster1_PubTatorCentralPredictions from PubTator Central for the articles in the GoldHamster1 corpus.13.8 K2020-02-26公開中
GoldHamster1_StructuredAbstractsSections from PubMed structured abstracts for the articles in the GoldHamster1 corpus.8242020-02-26公開中
GoldHamster1_ArguminSciPredictions from ArguminSci for the abstracts in the GoldHamster1 corpus.10.2 K2020-02-27公開中
GoldHamster1_CellosaurusPredictions of cell lines from Cellosaurus for the abstracts in the GoldHamster1 corpus.12.3 K2020-02-28公開中
LitCovid-docsThanks to NCBI, a comprehensive literature resource on the subject of Covid-19 is being collected: https://www.ncbi.nlm.nih.gov/research/coronavirus/ The LitCovid project@PubAnnotation is a collection of the titles and abstracts of the LitCovid dataset, for the people who want to perform text mining analysis. Please note that if you produce some annotation to the documents in this project, and contribute the annotation back to PubAnnotation, it will become publicly available together with contribution from other people. If you want to contribute your annotation to PubAnnotation, please refer to the documentation page: http://www.pubannotation.org/docs/submit-annotation/ The list of the PMID is sourced from here The 4 entries of the following PMIDs could not be included because they were not available from PubMed:32161394, 32104909, 32090470, 32076224. Below is a notice from the original LitCovid dataset: PUBLIC DOMAIN NOTICE National Center for Biotechnology Information This software/database is a "United States Government Work" under the terms of the United States Copyright Act. It was written as part of the author's official duties as a United States Government employee and thus cannot be copyrighted. This software/database is freely available to the public for use. The National Library of Medicine and the U.S. Government have not placed any restriction on its use or reproduction. Although all reasonable efforts have been taken to ensure the accuracy and reliability of the software and data, the NLM and the U.S. Government do not and cannot warrant the performance or results that may be obtained by using this software or data. The NLM and the U.S. Government disclaim all warranties, express or implied, including warranties of performance, merchantability or fitness for any particular purpose. Please cite the authors in any work or product based on this material : Chen Q, Allot A, & Lu Z. (2020) Keep up with the latest coronavirus research, Nature 579:193 0Jin-Dong Kim2020-03-18公開中
CORD-19_All_docsAll the documents in the whole CORD-19 dataset. The documents in this project will be updated as the CORD-19 dataset grows. See the COVID DATASET LICENSE AGREEMENT.0Jin-Dong Kim2020-03-23公開中
CORD-19_bioRxiv_medRxiv_subsetThe bioRxiv/medRxiv subset of the CORD-19 dataset: pre-prints that are not peer reviewed. The documents in this project will be updated as the CORD-19 dataset grows. See the COVID DATASET LICENSE AGREEMENT. 0Jin-Dong Kim2020-03-23公開中
CORD-19_Commercial_use_subsetThe Commercial use subset of the CORD-19 dataset. The documents in this project will be updated as the CORD-19 dataset grows. See the COVID DATASET LICENSE AGREEMENT.0Jin-Dong Kim2020-03-23公開中
CORD-19_Custom_license_subsetThe Custom license subset of the CORD-19 dataset. The documents in this project will be updated as the CORD-19 dataset grows. See the COVID DATASET LICENSE AGREEMENT.0Jin-Dong Kim2020-03-23公開中
NameT# Ann.AuthorMaintainerUpdated_atStatus

41-60 / 352 すべて表示
LocText2.29 KGoldberg et alShrikant Vinchurkar2020-02-01公開中
PIR-corpus25.52 KUniversity of Delaware and Georgetown University Medical CenterYue Wang2020-02-01公開中
BioLarkPubmedHPO7.24 KTudor Grozasimon2020-02-01公開中
DisGeNET5_variant_disease144 KIBI GroupYue Wang2020-02-01公開中
DisGeNET5_gene_disease2.04 MIBI GroupYue Wang2020-02-02公開中
GENIAcorpus79.2 KGENIA ProjectYue Wang2020-02-02公開中
SPECIES8003.71 KEvangelos Pafilis, Sune P. Frankild, Lucia Fanini, Sarah Faulwetter, Christina Pavloudi, Aikaterini Vasileiadou, Christos Arvanitidis, Lars Juhl Jensenevangelos2020-02-02公開中
jnlpba-st-training51.3 KGENIAYue Wang2020-02-02公開中
GoldHamster1_Development02020-02-25公開中
GoldHamster1_Test02020-02-25公開中
Goldhamster1_Train02020-02-25公開中
GoldHamster1_PubTatorCentral13.8 K2020-02-26公開中
GoldHamster1_StructuredAbstracts8242020-02-26公開中
GoldHamster1_ArguminSci10.2 K2020-02-27公開中
GoldHamster1_Cellosaurus12.3 K2020-02-28公開中
LitCovid-docs0Jin-Dong Kim2020-03-18公開中
CORD-19_All_docs0Jin-Dong Kim2020-03-23公開中
CORD-19_bioRxiv_medRxiv_subset0Jin-Dong Kim2020-03-23公開中
CORD-19_Commercial_use_subset0Jin-Dong Kim2020-03-23公開中
CORD-19_Custom_license_subset0Jin-Dong Kim2020-03-23公開中