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User 'Nico Colic'

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Projects

NameTDescription# Ann.Updated atStatus
1-10 / 11 show all
2015-BEL-Sample-2The 295 BEL statements for sample set used for the 2015 BioCreative challenge.11.4 K2016-05-25Released
bionlp-st-ge-2016-reference-teesNER and event extraction produced by TEES (with the default GE11 model) for the 20 full papers used in the BioNLP 2016 GE task reference corpus.14.6 K2016-05-25Released
bionlp-st-ge-2016-spacy-parsedDependency parses produced by spaCy parser, and part-of-speech tags produced by Stanford tagger (with the wsj-0-18-left3words-nodistsim model). The exact procedure is described here. Data set contains the 34 full paper articles used in the BioNLP 2016 GE task. 226 K2016-05-25Released
bionlp-st-ge-2016-test-teesNER and event extraction produced by TEES (with the default GE11 model) for the 14 full papers used in the BioNLP 2016 GE task test corpus.9.17 K2016-05-25Released
tees-testRandom PMC document used for testing during the development of a RESTful TEES parsing web service.4672016-05-25Developing
oger-json-testTest corpus for testing OGER web service100 K2018-03-01Testing
spacy-testRandom set of articles used for testing in the development of the RESTful spaCy parsing web service. Since development is now finished, they are released for the community to use.137 K2019-03-16Released
LitCovid-PMC-OGER-BBAnnotating PMC articles with OGER and BioBert, according to an hand-crafted Covid-specific dictionary and the 10 different CRAFT ontologies (http://bionlp-corpora.sourceforge.net/CRAFT/): Chemical Entities of Biological Interest (CHEBI), Cell Ontology (CL), Entrez Gene (UBERON), Gene Ontology (biological process (GO-BP), cellular component (GO-CC), and molecular function (GO-MF), NCBI Taxonomy (NCBITaxon), Protein Ontology (PR), Sequence Ontology (SO)18.1 K2020-04-15Developing
LitCovid-OGERUsing OGER (http://www.ontogene.org/resources/oger) to detect entities from 10 different vocabularies9.31 K2020-04-02Released
LitCovid-OGER-BioBertUsing OGER (http://www.ontogene.org/resources/oger) in conjunction with BioBert as described here (https://arxiv.org/pdf/2003.07424.pdf)4.03 K2020-04-02Released

Automatic annotators

NameDescription
1-1 / 1
OntoGeneEROntoGene Entity Recognition

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