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Annotators

Below is a list of pre-registered, automatic annotation services which are interoperable with PubAnnotation.

If you do not know an applicable annotation service to your purpose, you may want to take a look at PubDictionaries, which is a highly customizable, dictionary-based text annotation service.

NameDescriptionMaintainerUpdated_at

1-20 / 49 show all
PD-ORYZAGP-MSU-B Annotator created with OryzaGP and MSU URI in Batch modelarmande2021-01-22
PD-ORYZAGP-MSU Annotator created with OryzaGP dataset and MSU URIlarmande2021-01-22
PD-ORYZAGP-RAPDB-B annotator based on OryzaGP_RAPDB pub dictionary with batchlarmande2021-01-22
PD-ORYZAGP-RAPDB OryzaGP pub dictionary based on RAPDB URIlarmande2021-01-22
PD-ORYZAGP-B larmande2021-01-22
PD-ORYZAGP Annotator based on PubDictionary OryzaGP Oryzabase URIlarmande2021-01-22
OGER-TEXT At the moment, please don't send too much frequence requests.Jin-Dong Kim2021-01-20
Covid-19_Glycan-Motif ISSAKU YAMADA2021-01-19
GlyCosmosGlycans kiyoko2021-01-19
GlycanIUPAC http://pubdictionaries.org/dictionaries/GlyTouCan-IUPAC_condensedkiyoko2021-01-19
PD-GlycoEpitope-B A batch annotator using PubDictionaries with the dictionary 'GlycoEpitope'Jin-Dong Kim2021-01-17
PD-GO-BP-B Biological Processes as defined in GOJin-Dong Kim2021-01-14
PD-UBERON-AE It annotates for anatomical entities, based on the UBERON-AE dictionary on PubDictionaries. Threshold is set to 0.85.Jin-Dong Kim2021-01-11
PD-UBERON-AE-B It annotates for anatomical entities, based on the UBERON-AE dictionary on PubDictionaries. It used the default threshold, 0.85. It uses the batch mode annotation, and may be used for annotation to a large amount of documents.Jin-Dong Kim2021-01-11
EnjuParser Enju HPSG Parser developed by University of Tokyo.Jin-Dong Kim2020-12-31
PD-CHEBI-B Jin-Dong Kim2020-12-26
PD-CHEBI Pubdictionaries annotation using the terms sourced from CHEBI, the 2020-03-31 versionJin-Dong Kim2020-12-26
PD-MONDO PubDictionaries annotation with the MONDO dictionary.Jin-Dong Kim2020-12-23
PD-MONDO-B PubDictionaries annotation with the MONDO dictionary. Asynchronous protocol.Jin-Dong Kim2020-12-23
FirstAuthorDictionay AikoHIRAKI2020-10-08
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